Wall clock time and date at job start Sat Mar 6 2021 23:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47373 * 2 1 4 4 C 1.50700 * 109.47176 * 239.99524 * 2 1 3 5 5 C 1.34853 * 125.88915 * 119.97715 * 4 2 1 6 6 C 1.40891 * 107.41420 * 180.02562 * 5 4 2 7 7 C 1.34844 * 107.42072 * 359.97438 * 6 5 4 8 8 C 1.50703 * 125.89017 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46874 * 85.02326 * 8 7 6 10 10 O 1.21276 * 120.00429 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99437 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99863 * 179.72490 * 11 9 8 13 13 C 1.52995 * 109.47409 * 174.30754 * 12 11 9 14 14 C 1.50709 * 112.84614 * 301.28093 * 13 12 11 15 15 C 1.38234 * 120.00122 * 113.64725 * 14 13 12 16 16 C 1.38230 * 119.99773 * 179.76199 * 15 14 13 17 17 C 1.38234 * 120.00311 * 0.51504 * 16 15 14 18 18 C 1.38237 * 119.99957 * 359.73660 * 17 16 15 19 19 C 1.38235 * 119.99754 * 293.91887 * 14 13 12 20 20 C 1.53776 * 113.61814 * 170.08485 * 13 12 11 21 21 C 1.54052 * 86.98696 * 270.83588 * 20 13 12 22 22 H 1.08999 * 113.62000 * 220.02021 * 21 20 13 23 23 O 1.42897 * 113.68995 * 89.12182 * 21 20 13 24 24 C 1.53778 * 113.61509 * 72.47301 * 13 12 11 25 25 N 1.36337 * 125.89328 * 300.31140 * 4 2 1 26 26 H 0.96694 * 113.99682 * 60.00232 * 1 2 3 27 27 H 1.09005 * 109.46606 * 119.99873 * 2 1 3 28 28 H 1.48501 * 110.00420 * 59.99658 * 3 2 1 29 29 H 1.48501 * 110.00266 * 181.31619 * 3 2 1 30 30 H 1.08002 * 126.28834 * 0.04301 * 5 4 2 31 31 H 1.08004 * 126.28802 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.47348 * 325.02471 * 8 7 6 33 33 H 1.09004 * 109.46668 * 205.02241 * 8 7 6 34 34 H 0.97001 * 120.00381 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.46749 * 294.30794 * 12 11 9 36 36 H 1.08999 * 109.46667 * 54.30121 * 12 11 9 37 37 H 1.08003 * 119.99902 * 359.97438 * 15 14 13 38 38 H 1.08004 * 120.00263 * 180.22767 * 16 15 14 39 39 H 1.07996 * 120.00297 * 179.72284 * 17 16 15 40 40 H 1.08003 * 120.00460 * 179.97438 * 18 17 16 41 41 H 1.07997 * 120.00103 * 0.02562 * 19 14 13 42 42 H 1.09003 * 113.61245 * 25.42978 * 20 13 12 43 43 H 1.09000 * 113.62024 * 156.33023 * 20 13 12 44 44 H 0.96697 * 114.00018 * 82.47343 * 23 21 20 45 45 H 1.09008 * 113.61237 * 203.66814 * 24 13 12 46 46 H 1.08995 * 113.61705 * 334.48356 * 24 13 12 47 47 H 0.97011 * 125.63852 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7096 -0.1727 -2.1915 6 6 2.9442 -1.1746 -3.1538 7 6 2.3010 -2.2866 -2.7439 8 6 2.2759 -3.6094 -3.4655 9 6 3.4948 -4.4111 -3.0875 10 8 4.3043 -3.9532 -2.3092 11 7 3.6851 -5.6369 -3.6144 12 6 4.8730 -6.4138 -3.2516 13 6 4.7772 -7.8103 -3.8690 14 6 3.5504 -8.5640 -3.4238 15 6 2.5588 -8.8713 -4.3365 16 6 1.4359 -9.5669 -3.9291 17 6 1.2996 -9.9460 -2.6068 18 6 2.2888 -9.6342 -1.6929 19 6 3.4143 -8.9432 -2.1014 20 6 6.0763 -8.6252 -3.7540 21 6 6.4912 -8.0007 -5.0998 22 1 6.9885 -8.7006 -5.7712 23 8 7.1954 -6.7644 -4.9662 24 6 4.9914 -7.8268 -5.3917 25 7 1.6723 -2.0060 -1.5671 26 1 -0.3932 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8901 28 1 1.5616 2.4679 1.2084 29 1 3.5347 1.7702 -0.0321 30 1 3.0843 0.8399 -2.2184 31 1 3.5320 -1.0713 -4.0540 32 1 2.2743 -3.4363 -4.5416 33 1 1.3777 -4.1595 -3.1846 34 1 3.0377 -6.0030 -4.2372 35 1 5.7644 -5.9110 -3.6268 36 1 4.9337 -6.4994 -2.1667 37 1 2.6630 -8.5709 -5.3687 38 1 0.6628 -9.8102 -4.6430 39 1 0.4202 -10.4855 -2.2876 40 1 2.1822 -9.9300 -0.6596 41 1 4.1867 -8.6989 -1.3873 42 1 6.7079 -8.3242 -2.9182 43 1 5.9214 -9.7030 -3.8022 44 1 8.1392 -6.8672 -4.7825 45 1 4.5404 -8.6868 -5.8868 46 1 4.7463 -6.8823 -5.8773 47 1 1.1323 -2.6265 -1.0528 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13154426_14644196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:25:04 Heat of formation + Delta-G solvation = -14.896357 kcal Electronic energy + Delta-G solvation = -29773.744963 eV Core-core repulsion = 25696.582434 eV Total energy + Delta-G solvation = -4077.162529 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.23756 -41.88935 -40.07729 -39.38040 -37.63552 -36.42436 -34.90045 -33.08452 -31.99220 -31.80798 -31.77764 -29.76368 -28.11477 -27.05550 -25.22199 -24.48978 -23.30907 -22.47604 -21.70207 -21.21587 -20.90473 -20.02609 -18.84749 -18.71347 -18.06527 -17.76818 -17.20940 -16.64291 -16.48378 -16.19027 -16.16786 -15.89536 -15.71413 -15.38707 -15.13739 -14.82573 -14.52575 -14.46876 -14.28784 -14.17623 -14.11179 -13.91740 -13.76664 -13.70117 -13.47076 -13.21068 -13.06804 -12.80169 -12.67252 -12.33276 -11.97696 -11.94676 -11.83908 -11.70170 -11.38889 -10.84640 -10.73963 -10.56246 -9.93242 -9.89227 -9.69496 -9.64288 -8.81812 -4.91894 0.34432 0.40583 1.23885 1.33138 1.77073 1.77834 1.98691 2.07059 2.36758 2.58949 2.74801 2.96085 3.24956 3.44548 3.50518 3.57640 3.67463 3.72361 3.83540 3.89491 4.01080 4.03536 4.08834 4.11474 4.15327 4.29277 4.43336 4.50111 4.50365 4.53736 4.57716 4.64885 4.66466 4.69802 4.83901 4.89464 4.93574 4.94774 5.03784 5.07587 5.16444 5.39268 5.43086 5.47525 5.51788 5.55527 5.59831 6.00004 6.12989 6.27630 6.55290 6.57570 6.58220 6.73959 7.34936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.050 4.050 3 Si 0.721 3.279 4 C -0.011 4.011 5 C -0.188 4.188 6 C -0.173 4.173 7 C 0.038 3.962 8 C -0.072 4.072 9 C 0.511 3.489 10 O -0.525 6.525 11 N -0.726 5.726 12 C 0.145 3.855 13 C -0.051 4.051 14 C -0.068 4.068 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.152 4.152 21 C 0.080 3.920 22 H 0.072 0.928 23 O -0.547 6.547 24 C -0.127 4.127 25 N -0.535 5.535 26 H 0.381 0.619 27 H 0.110 0.890 28 H -0.256 1.256 29 H -0.255 1.255 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.383 0.617 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -3.559 -4.920 6.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.160 4.160 3 Si 0.621 3.379 4 C -0.125 4.125 5 C -0.213 4.213 6 C -0.198 4.198 7 C -0.076 4.076 8 C -0.113 4.113 9 C 0.296 3.704 10 O -0.400 6.400 11 N -0.378 5.378 12 C 0.021 3.979 13 C -0.051 4.051 14 C -0.068 4.068 15 C -0.139 4.139 16 C -0.134 4.134 17 C -0.141 4.141 18 C -0.134 4.134 19 C -0.128 4.128 20 C -0.190 4.190 21 C 0.021 3.979 22 H 0.090 0.910 23 O -0.353 6.353 24 C -0.164 4.164 25 N -0.130 5.130 26 H 0.228 0.772 27 H 0.127 0.873 28 H -0.181 1.181 29 H -0.179 1.179 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.232 0.768 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.232 0.768 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.303 -2.788 -3.385 4.574 hybrid contribution 0.015 -1.720 0.259 1.739 sum -1.288 -4.508 -3.126 5.635 Atomic orbital electron populations 1.86474 1.17487 1.81796 1.49499 1.24849 0.84791 1.10740 0.95627 0.94133 0.81045 0.76346 0.86390 1.20804 1.06147 0.85627 0.99884 1.20643 1.04583 1.00021 0.96007 1.20581 1.04793 0.92566 1.01831 1.19473 1.02627 0.95715 0.89746 1.20125 0.97332 0.91786 1.02026 1.20522 0.87621 0.81262 0.80952 1.90764 1.45545 1.69515 1.34202 1.45861 1.25937 1.17438 1.48590 1.21211 0.88870 0.88319 0.99451 1.20935 0.93200 0.94552 0.96427 1.19588 0.95108 0.98383 0.93700 1.21076 0.93849 0.99577 0.99443 1.21176 0.97840 0.98289 0.96133 1.21209 0.99109 1.00161 0.93600 1.21190 0.94040 0.98435 0.99757 1.20972 0.97998 0.98465 0.95400 1.23729 0.95769 1.00155 0.99379 1.22690 0.93285 0.86145 0.95829 0.90972 1.86475 1.25692 1.29051 1.94077 1.23244 0.94372 1.03718 0.95054 1.41780 1.40961 1.11056 1.19193 0.77164 0.87302 1.18142 1.17917 0.84143 0.84589 0.86560 0.88398 0.76753 0.88756 0.91501 0.85824 0.85941 0.86074 0.86062 0.86321 0.90192 0.88591 0.76840 0.88073 0.89906 0.75156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.53 12.88 -35.23 -0.45 -0.98 16 2 C -0.05 -0.06 3.08 36.01 0.11 0.05 16 3 Si 0.72 0.04 30.58 -169.99 -5.20 -5.16 16 4 C -0.01 -0.03 6.51 -81.79 -0.53 -0.56 16 5 C -0.19 -0.51 9.37 -39.78 -0.37 -0.88 16 6 C -0.17 -0.55 10.76 -39.78 -0.43 -0.98 16 7 C 0.04 0.09 5.66 -81.79 -0.46 -0.37 16 8 C -0.07 0.03 6.24 -29.03 -0.18 -0.16 16 9 C 0.51 1.26 7.82 -10.98 -0.09 1.17 16 10 O -0.53 -3.80 16.02 5.56 0.09 -3.71 16 11 N -0.73 -0.13 5.30 -60.29 -0.32 -0.45 16 12 C 0.14 0.13 4.81 -4.04 -0.02 0.11 16 13 C -0.05 0.06 0.65 -154.85 -0.10 -0.04 16 14 C -0.07 0.04 4.33 -104.62 -0.45 -0.41 16 15 C -0.12 0.15 9.05 -39.59 -0.36 -0.21 16 16 C -0.12 0.10 10.05 -39.59 -0.40 -0.30 16 17 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 18 C -0.12 -0.02 10.05 -39.58 -0.40 -0.41 16 19 C -0.11 -0.03 9.45 -39.58 -0.37 -0.40 16 20 C -0.15 0.28 6.97 -25.78 -0.18 0.10 16 21 C 0.08 -0.15 5.28 -25.77 -0.14 -0.29 16 22 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 23 O -0.55 0.37 11.51 -35.23 -0.41 -0.04 16 24 C -0.13 0.25 6.13 -25.92 -0.16 0.10 16 25 N -0.54 -1.15 6.07 -5.44 -0.03 -1.19 16 26 H 0.38 -1.06 8.70 45.56 0.40 -0.66 16 27 H 0.11 0.21 7.96 -51.93 -0.41 -0.21 16 28 H -0.26 -0.72 7.11 56.52 0.40 -0.32 16 29 H -0.25 -0.74 7.11 56.52 0.40 -0.33 16 30 H 0.14 0.13 6.22 -52.49 -0.33 -0.20 16 31 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 32 H 0.12 -0.30 8.14 -51.93 -0.42 -0.72 16 33 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 34 H 0.40 -0.79 8.21 -40.82 -0.34 -1.12 16 35 H 0.09 0.24 5.92 -51.93 -0.31 -0.07 16 36 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 37 H 0.12 -0.36 6.44 -52.48 -0.34 -0.70 16 38 H 0.12 -0.29 8.06 -52.48 -0.42 -0.71 16 39 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 40 H 0.12 -0.12 8.06 -52.48 -0.42 -0.55 16 41 H 0.12 -0.01 8.06 -52.49 -0.42 -0.44 16 42 H 0.08 -0.13 8.10 -51.93 -0.42 -0.55 16 43 H 0.10 -0.20 8.09 -51.93 -0.42 -0.62 16 44 H 0.38 -1.62 9.12 45.56 0.42 -1.20 16 45 H 0.10 -0.31 6.83 -51.92 -0.35 -0.66 16 46 H 0.08 -0.11 8.10 -51.93 -0.42 -0.53 16 47 H 0.41 0.27 8.96 -40.82 -0.37 -0.09 16 LS Contribution 388.29 15.07 5.85 5.85 Total: 0.00 -10.23 388.29 -11.29 -21.51 By element: Atomic # 1 Polarization: -6.10 SS G_CDS: -5.89 Total: -11.99 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.92 Total: -3.85 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -0.35 Total: -1.64 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.77 Total: -4.73 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: -5.20 Total: -5.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -10.23 -11.29 -21.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_14644196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.616 kcal (2) G-P(sol) polarization free energy of solvation -10.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds