Wall clock time and date at job start Sat Mar 6 2021 23:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47373 * 2 1 4 4 C 1.50700 * 109.47176 * 239.99524 * 2 1 3 5 5 C 1.34853 * 125.88915 * 119.97715 * 4 2 1 6 6 C 1.40891 * 107.41420 * 180.02562 * 5 4 2 7 7 C 1.34844 * 107.42072 * 359.97438 * 6 5 4 8 8 C 1.50703 * 125.89017 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46874 * 85.02326 * 8 7 6 10 10 O 1.21276 * 120.00429 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99437 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99863 * 179.72490 * 11 9 8 13 13 C 1.52995 * 109.47409 * 174.30754 * 12 11 9 14 14 C 1.50709 * 112.84614 * 301.28093 * 13 12 11 15 15 C 1.38234 * 120.00122 * 113.64725 * 14 13 12 16 16 C 1.38230 * 119.99773 * 179.76199 * 15 14 13 17 17 C 1.38234 * 120.00311 * 0.51504 * 16 15 14 18 18 C 1.38237 * 119.99957 * 359.73660 * 17 16 15 19 19 C 1.38235 * 119.99754 * 293.91887 * 14 13 12 20 20 C 1.53776 * 113.61814 * 170.08485 * 13 12 11 21 21 C 1.54052 * 86.98696 * 270.83588 * 20 13 12 22 22 H 1.08999 * 113.62000 * 220.02021 * 21 20 13 23 23 O 1.42897 * 113.68995 * 89.12182 * 21 20 13 24 24 C 1.53778 * 113.61509 * 72.47301 * 13 12 11 25 25 N 1.36337 * 125.89328 * 300.31140 * 4 2 1 26 26 H 0.96694 * 113.99682 * 60.00232 * 1 2 3 27 27 H 1.09005 * 109.46606 * 119.99873 * 2 1 3 28 28 H 1.48501 * 110.00420 * 59.99658 * 3 2 1 29 29 H 1.48501 * 110.00266 * 181.31619 * 3 2 1 30 30 H 1.08002 * 126.28834 * 0.04301 * 5 4 2 31 31 H 1.08004 * 126.28802 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.47348 * 325.02471 * 8 7 6 33 33 H 1.09004 * 109.46668 * 205.02241 * 8 7 6 34 34 H 0.97001 * 120.00381 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.46749 * 294.30794 * 12 11 9 36 36 H 1.08999 * 109.46667 * 54.30121 * 12 11 9 37 37 H 1.08003 * 119.99902 * 359.97438 * 15 14 13 38 38 H 1.08004 * 120.00263 * 180.22767 * 16 15 14 39 39 H 1.07996 * 120.00297 * 179.72284 * 17 16 15 40 40 H 1.08003 * 120.00460 * 179.97438 * 18 17 16 41 41 H 1.07997 * 120.00103 * 0.02562 * 19 14 13 42 42 H 1.09003 * 113.61245 * 25.42978 * 20 13 12 43 43 H 1.09000 * 113.62024 * 156.33023 * 20 13 12 44 44 H 0.96697 * 114.00018 * 82.47343 * 23 21 20 45 45 H 1.09008 * 113.61237 * 203.66814 * 24 13 12 46 46 H 1.08995 * 113.61705 * 334.48356 * 24 13 12 47 47 H 0.97011 * 125.63852 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7096 -0.1727 -2.1915 6 6 2.9442 -1.1746 -3.1538 7 6 2.3010 -2.2866 -2.7439 8 6 2.2759 -3.6094 -3.4655 9 6 3.4948 -4.4111 -3.0875 10 8 4.3043 -3.9532 -2.3092 11 7 3.6851 -5.6369 -3.6144 12 6 4.8730 -6.4138 -3.2516 13 6 4.7772 -7.8103 -3.8690 14 6 3.5504 -8.5640 -3.4238 15 6 2.5588 -8.8713 -4.3365 16 6 1.4359 -9.5669 -3.9291 17 6 1.2996 -9.9460 -2.6068 18 6 2.2888 -9.6342 -1.6929 19 6 3.4143 -8.9432 -2.1014 20 6 6.0763 -8.6252 -3.7540 21 6 6.4912 -8.0007 -5.0998 22 1 6.9885 -8.7006 -5.7712 23 8 7.1954 -6.7644 -4.9662 24 6 4.9914 -7.8268 -5.3917 25 7 1.6723 -2.0060 -1.5671 26 1 -0.3932 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8901 28 1 1.5616 2.4679 1.2084 29 1 3.5347 1.7702 -0.0321 30 1 3.0843 0.8399 -2.2184 31 1 3.5320 -1.0713 -4.0540 32 1 2.2743 -3.4363 -4.5416 33 1 1.3777 -4.1595 -3.1846 34 1 3.0377 -6.0030 -4.2372 35 1 5.7644 -5.9110 -3.6268 36 1 4.9337 -6.4994 -2.1667 37 1 2.6630 -8.5709 -5.3687 38 1 0.6628 -9.8102 -4.6430 39 1 0.4202 -10.4855 -2.2876 40 1 2.1822 -9.9300 -0.6596 41 1 4.1867 -8.6989 -1.3873 42 1 6.7079 -8.3242 -2.9182 43 1 5.9214 -9.7030 -3.8022 44 1 8.1392 -6.8672 -4.7825 45 1 4.5404 -8.6868 -5.8868 46 1 4.7463 -6.8823 -5.8773 47 1 1.1323 -2.6265 -1.0528 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_14644196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:25:03 Heat of formation + Delta-G solvation = -17.415246 kcal Electronic energy + Delta-G solvation = -29773.854190 eV Core-core repulsion = 25696.582434 eV Total energy + Delta-G solvation = -4077.271756 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.36064 -41.83725 -40.25642 -39.28479 -37.70884 -36.40287 -35.00881 -33.16479 -31.94382 -31.90349 -31.71644 -29.86075 -28.13781 -26.92506 -25.27534 -24.50128 -23.22503 -22.38007 -21.85558 -21.36614 -21.04500 -19.96536 -18.92892 -18.61294 -18.15098 -17.67463 -17.31122 -16.64924 -16.56594 -16.26864 -16.20628 -15.82262 -15.71218 -15.34473 -15.20195 -14.91933 -14.60975 -14.42391 -14.32033 -14.24391 -14.11609 -14.00815 -13.85680 -13.74067 -13.51820 -13.14114 -13.01813 -12.73761 -12.70495 -12.23455 -12.09475 -12.00783 -11.88969 -11.60841 -11.28490 -11.01496 -10.69602 -10.65084 -10.06466 -9.84383 -9.81141 -9.62933 -8.96987 -4.96523 0.40970 0.47295 1.09542 1.26143 1.60775 1.69165 1.85836 1.95207 2.27969 2.49798 2.81982 3.15459 3.36036 3.49541 3.53153 3.65732 3.71380 3.75640 3.77950 3.89693 4.10668 4.12337 4.13486 4.16762 4.26585 4.38402 4.44179 4.46683 4.53558 4.59054 4.61723 4.68430 4.74028 4.77998 4.82851 4.88351 4.99635 5.07401 5.12972 5.17593 5.20428 5.24348 5.27880 5.40088 5.58089 5.62709 5.66339 5.98839 6.08816 6.12465 6.48946 6.64462 6.69905 6.85950 7.22815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.813 3.187 4 C -0.020 4.020 5 C -0.202 4.202 6 C -0.199 4.199 7 C 0.033 3.967 8 C -0.066 4.066 9 C 0.509 3.491 10 O -0.580 6.580 11 N -0.711 5.711 12 C 0.150 3.850 13 C -0.044 4.044 14 C -0.070 4.070 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.151 4.151 21 C 0.078 3.922 22 H 0.087 0.913 23 O -0.567 6.567 24 C -0.122 4.122 25 N -0.538 5.538 26 H 0.397 0.603 27 H 0.099 0.901 28 H -0.291 1.291 29 H -0.294 1.294 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.396 0.604 45 H 0.118 0.882 46 H 0.078 0.922 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 -4.330 -6.671 8.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.164 4.164 3 Si 0.717 3.283 4 C -0.134 4.134 5 C -0.226 4.226 6 C -0.223 4.223 7 C -0.081 4.081 8 C -0.106 4.106 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.363 5.363 12 C 0.026 3.974 13 C -0.045 4.045 14 C -0.070 4.070 15 C -0.138 4.138 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.189 4.189 21 C 0.019 3.981 22 H 0.105 0.895 23 O -0.376 6.376 24 C -0.159 4.159 25 N -0.133 5.133 26 H 0.248 0.752 27 H 0.116 0.884 28 H -0.219 1.219 29 H -0.221 1.221 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.246 0.754 45 H 0.136 0.864 46 H 0.097 0.903 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.550 -3.601 -5.179 6.804 hybrid contribution 0.419 -1.517 0.838 1.783 sum -2.131 -5.118 -4.341 7.042 Atomic orbital electron populations 1.86437 1.17148 1.82257 1.50696 1.24969 0.85177 1.11443 0.94769 0.93039 0.77309 0.73849 0.84064 1.20994 1.06289 0.85936 1.00154 1.20909 1.04781 1.00775 0.96178 1.20847 1.05600 0.93320 1.02533 1.19868 1.01986 0.96571 0.89705 1.20225 0.96747 0.90327 1.03288 1.21042 0.87780 0.81591 0.80011 1.90743 1.47646 1.70803 1.36794 1.45762 1.25794 1.16734 1.48036 1.21054 0.88555 0.89591 0.98183 1.20803 0.93409 0.93123 0.97154 1.19633 0.95444 0.98416 0.93473 1.21310 0.93261 0.98971 1.00249 1.21455 0.98372 0.97874 0.96188 1.21433 0.99353 1.00367 0.94011 1.21345 0.94353 0.98863 1.00319 1.21062 0.98182 0.99224 0.96007 1.23734 0.95346 1.00376 0.99440 1.22775 0.93544 0.85960 0.95795 0.89532 1.86441 1.26979 1.30024 1.94138 1.23281 0.94345 1.04231 0.94014 1.41881 1.40978 1.11160 1.19260 0.75236 0.88374 1.21913 1.22122 0.82967 0.84123 0.83810 0.85774 0.75161 0.90433 0.93746 0.83740 0.84177 0.85059 0.85709 0.86989 0.90935 0.87973 0.75387 0.86362 0.90287 0.74532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.98 12.88 -148.98 -1.92 -2.90 16 2 C -0.05 -0.16 3.08 71.24 0.22 0.06 16 3 Si 0.81 0.52 30.58 68.60 2.10 2.62 16 4 C -0.02 -0.11 6.51 41.08 0.27 0.16 16 5 C -0.20 -1.23 9.37 22.14 0.21 -1.03 16 6 C -0.20 -1.39 10.76 22.14 0.24 -1.15 16 7 C 0.03 0.16 5.66 41.08 0.23 0.39 16 8 C -0.07 0.10 6.24 29.10 0.18 0.28 16 9 C 0.51 2.78 7.82 87.66 0.69 3.46 16 10 O -0.58 -9.51 16.02 -3.02 -0.05 -9.56 16 11 N -0.71 -0.39 5.30 -463.05 -2.45 -2.85 16 12 C 0.15 0.45 4.81 86.38 0.42 0.87 16 13 C -0.04 0.11 0.65 -52.40 -0.03 0.07 16 14 C -0.07 0.11 4.33 -19.86 -0.09 0.02 16 15 C -0.12 0.47 9.05 22.27 0.20 0.68 16 16 C -0.12 0.37 10.05 22.27 0.22 0.59 16 17 C -0.13 0.13 10.05 22.27 0.22 0.35 16 18 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 19 C -0.13 -0.16 9.45 22.27 0.21 0.05 16 20 C -0.15 0.51 6.97 31.21 0.22 0.73 16 21 C 0.08 -0.32 5.28 31.21 0.16 -0.16 16 22 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 23 O -0.57 0.51 11.51 -148.98 -1.71 -1.20 16 24 C -0.12 0.62 6.13 31.12 0.19 0.81 16 25 N -0.54 -2.54 6.07 -171.12 -1.04 -3.58 16 26 H 0.40 -2.47 8.70 -74.06 -0.64 -3.11 16 27 H 0.10 0.48 7.96 -2.38 -0.02 0.46 16 28 H -0.29 -1.88 7.11 99.48 0.71 -1.17 16 29 H -0.29 -2.09 7.11 99.48 0.71 -1.39 16 30 H 0.15 0.36 6.22 -2.91 -0.02 0.34 16 31 H 0.14 0.69 8.06 -2.91 -0.02 0.66 16 32 H 0.14 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H 0.12 -0.83 8.14 -2.38 -0.02 -0.85 16 34 H 0.41 -2.04 8.21 -92.71 -0.76 -2.80 16 35 H 0.08 0.54 5.92 -2.38 -0.01 0.52 16 36 H 0.04 0.33 8.09 -2.39 -0.02 0.32 16 37 H 0.14 -1.23 6.44 -2.91 -0.02 -1.24 16 38 H 0.14 -0.97 8.06 -2.91 -0.02 -0.99 16 39 H 0.13 -0.49 8.06 -2.91 -0.02 -0.51 16 40 H 0.12 -0.12 8.06 -2.91 -0.02 -0.15 16 41 H 0.11 0.20 8.06 -2.91 -0.02 0.17 16 42 H 0.07 -0.14 8.10 -2.39 -0.02 -0.16 16 43 H 0.10 -0.46 8.09 -2.39 -0.02 -0.47 16 44 H 0.40 -3.09 9.12 -74.06 -0.68 -3.76 16 45 H 0.12 -0.99 6.83 -2.38 -0.02 -1.01 16 46 H 0.08 -0.30 8.10 -2.39 -0.02 -0.32 16 47 H 0.42 0.69 8.96 -92.70 -0.83 -0.14 16 Total: 0.00 -25.51 388.29 -2.93 -28.43 By element: Atomic # 1 Polarization: -15.43 SS G_CDS: -1.84 Total: -17.27 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 3.98 Total: 6.30 kcal Atomic # 7 Polarization: -2.93 SS G_CDS: -3.49 Total: -6.42 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -3.68 Total: -13.66 kcal Atomic # 14 Polarization: 0.52 SS G_CDS: 2.10 Total: 2.62 kcal Total: -25.51 -2.93 -28.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_14644196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.019 kcal (2) G-P(sol) polarization free energy of solvation -25.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds