Wall clock time and date at job start Sat Mar 6 2021 23:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.47373 * 2 1 4 4 C 1.50708 * 109.46375 * 240.00430 * 2 1 3 5 5 C 1.34500 * 125.48804 * 149.97585 * 4 2 1 6 6 C 1.46751 * 106.36402 * 180.02562 * 5 4 2 7 7 C 1.47260 * 126.97184 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00215 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99687 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99563 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46981 * 185.13661 * 10 9 7 12 12 C 1.50703 * 112.85198 * 58.02680 * 11 10 9 13 13 C 1.38238 * 120.00105 * 257.06845 * 12 11 10 14 14 C 1.38237 * 119.99715 * 180.02562 * 13 12 11 15 15 C 1.38231 * 119.99915 * 359.95905 * 14 13 12 16 16 C 1.38230 * 120.00145 * 0.27465 * 15 14 13 17 17 C 1.38232 * 119.99506 * 77.09031 * 12 11 10 18 18 C 1.53783 * 113.68942 * 286.76345 * 11 10 9 19 19 C 1.53781 * 87.08058 * 270.87312 * 18 11 10 20 20 H 1.09003 * 113.61627 * 220.01722 * 19 18 11 21 21 O 1.42904 * 113.61577 * 89.11675 * 19 18 11 22 22 C 1.53777 * 87.08034 * 334.56625 * 19 18 11 23 23 C 1.36339 * 106.05826 * 0.21202 * 6 5 4 24 24 C 1.51001 * 126.78942 * 179.81445 * 23 6 5 25 25 C 1.53392 * 108.24674 * 164.28631 * 24 23 6 26 26 C 1.53155 * 109.03917 * 48.48617 * 25 24 23 27 27 C 1.53357 * 109.33030 * 290.20894 * 26 25 24 28 28 N 1.35210 * 108.66103 * 359.65654 * 23 6 5 29 29 H 0.96699 * 114.00615 * 59.99037 * 1 2 3 30 30 H 1.08995 * 109.47408 * 120.01091 * 2 1 3 31 31 H 1.48502 * 109.99309 * 60.00554 * 3 2 1 32 32 H 1.48500 * 110.00084 * 181.32320 * 3 2 1 33 33 H 1.07997 * 126.82248 * 0.06916 * 5 4 2 34 34 H 0.96995 * 120.00182 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47254 * 65.13326 * 10 9 7 36 36 H 1.09005 * 109.47330 * 305.13126 * 10 9 7 37 37 H 1.07997 * 120.00045 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.99436 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.99898 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.99930 * 179.72303 * 16 15 14 41 41 H 1.07994 * 120.00548 * 359.97438 * 17 12 11 42 42 H 1.09009 * 113.61595 * 25.41724 * 18 11 10 43 43 H 1.08994 * 113.61799 * 156.32539 * 18 11 10 44 44 H 0.96694 * 114.00175 * 82.50256 * 21 19 18 45 45 H 1.09001 * 113.61712 * 270.88223 * 22 19 18 46 46 H 1.09005 * 113.61546 * 139.97902 * 22 19 18 47 47 H 1.08998 * 109.70957 * 283.97864 * 24 23 6 48 48 H 1.09004 * 109.70513 * 44.55453 * 24 23 6 49 49 H 1.09000 * 109.53923 * 168.35296 * 25 24 23 50 50 H 1.08999 * 109.54225 * 288.61477 * 25 24 23 51 51 H 1.08996 * 109.46481 * 50.44548 * 26 25 24 52 52 H 1.09004 * 109.46141 * 170.40856 * 26 25 24 53 53 H 1.09005 * 110.08499 * 291.24137 * 27 26 25 54 54 H 1.09002 * 109.13232 * 170.85044 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 3.0853 -0.4459 -1.8685 6 6 3.1546 -1.3767 -3.0010 7 6 4.2320 -1.4779 -3.9997 8 8 4.1588 -2.3011 -4.8920 9 7 5.2993 -0.6582 -3.9249 10 6 6.3709 -0.7585 -4.9188 11 6 7.5119 0.1861 -4.5356 12 6 8.0736 -0.0997 -3.1667 13 6 7.7357 0.7096 -2.0981 14 6 8.2515 0.4477 -0.8426 15 6 9.1043 -0.6239 -0.6555 16 6 9.4460 -1.4303 -1.7250 17 6 8.9271 -1.1709 -2.9798 18 6 7.1901 1.6713 -4.7715 19 6 7.7497 1.4858 -6.1918 20 1 8.3480 2.3283 -6.5389 21 8 6.7683 1.0708 -7.1441 22 6 8.5873 0.3272 -5.6257 23 6 2.0165 -2.1252 -2.9440 24 6 1.6097 -3.2262 -3.8941 25 6 0.4862 -4.0374 -3.2363 26 6 -0.5759 -3.0744 -2.6976 27 6 -0.0057 -2.3100 -1.4967 28 7 1.2882 -1.7248 -1.8775 29 1 -0.3934 0.4418 -0.7649 30 1 1.7924 -0.5140 0.8898 31 1 1.5616 2.4677 1.2086 32 1 3.5347 1.7702 -0.0322 33 1 3.8164 0.3024 -1.6003 34 1 5.3578 -0.0019 -3.2130 35 1 5.9840 -0.4819 -5.8994 36 1 6.7425 -1.7828 -4.9504 37 1 7.0689 1.5465 -2.2442 38 1 7.9878 1.0803 -0.0079 39 1 9.5076 -0.8283 0.3253 40 1 10.1158 -2.2649 -1.5797 41 1 9.1910 -1.8032 -3.8145 42 1 6.1237 1.8961 -4.7483 43 1 7.7801 2.3493 -4.1549 44 1 6.2383 1.7952 -7.5038 45 1 9.5594 0.6376 -5.2425 46 1 8.6491 -0.5333 -6.2920 47 1 1.2517 -2.7924 -4.8277 48 1 2.4635 -3.8738 -4.0933 49 1 0.0358 -4.7013 -3.9742 50 1 0.8945 -4.6264 -2.4151 51 1 -0.8593 -2.3712 -3.4807 52 1 -1.4530 -3.6401 -2.3831 53 1 0.1338 -2.9871 -0.6539 54 1 -0.6977 -1.5153 -1.2178 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_16915396.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:25:14 Heat of formation + Delta-G solvation = -16.707560 kcal Electronic energy + Delta-G solvation = -36935.132973 eV Core-core repulsion = 32418.590527 eV Total energy + Delta-G solvation = -4516.542447 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.193 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.81216 -41.80218 -39.98690 -39.27180 -37.96484 -36.87256 -36.34021 -34.91303 -33.48113 -31.88628 -31.74044 -31.18675 -29.95990 -28.25569 -26.93765 -26.45536 -24.83822 -24.66956 -23.53339 -23.17487 -22.32392 -21.77969 -21.07993 -20.14095 -19.42831 -18.79591 -18.54365 -17.71444 -17.41427 -17.00058 -16.68155 -16.54581 -16.37955 -16.01222 -15.88560 -15.79697 -15.48138 -15.37956 -15.25174 -15.20329 -15.08506 -14.67311 -14.54240 -14.38651 -14.32010 -14.24946 -13.94653 -13.84174 -13.61907 -13.26138 -13.10691 -13.04802 -12.75637 -12.68502 -12.37301 -12.18616 -12.05905 -11.98500 -11.88322 -11.79350 -11.77370 -11.69953 -11.11721 -10.94199 -10.66546 -10.64619 -10.07149 -9.84084 -9.62950 -9.57040 -9.06907 -4.93025 0.41636 0.47104 0.71000 1.05309 1.37553 1.67169 1.81021 2.02855 2.37389 2.53391 2.82685 3.17445 3.30979 3.44131 3.45766 3.53669 3.59637 3.69344 3.70209 3.78782 3.80846 3.81992 3.98237 4.11426 4.13307 4.19870 4.25782 4.32917 4.34539 4.40467 4.42464 4.46342 4.56068 4.61282 4.62870 4.70348 4.74739 4.76727 4.79662 4.82630 4.86173 4.90228 4.96787 5.01264 5.01907 5.09552 5.12841 5.15471 5.19852 5.22048 5.24259 5.48275 5.57653 5.61542 5.66495 5.68636 6.01602 6.08887 6.21390 6.59212 6.63860 6.91877 7.33521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.047 4.047 3 Si 0.796 3.204 4 C -0.007 4.007 5 C -0.173 4.173 6 C -0.255 4.255 7 C 0.586 3.414 8 O -0.590 6.590 9 N -0.709 5.709 10 C 0.152 3.848 11 C -0.047 4.047 12 C -0.069 4.069 13 C -0.122 4.122 14 C -0.124 4.124 15 C -0.135 4.135 16 C -0.129 4.129 17 C -0.127 4.127 18 C -0.152 4.152 19 C 0.081 3.919 20 H 0.089 0.911 21 O -0.567 6.567 22 C -0.119 4.119 23 C 0.107 3.893 24 C -0.053 4.053 25 C -0.126 4.126 26 C -0.132 4.132 27 C 0.094 3.906 28 N -0.423 5.423 29 H 0.395 0.605 30 H 0.110 0.890 31 H -0.291 1.291 32 H -0.272 1.272 33 H 0.159 0.841 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.396 0.604 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.061 0.939 51 H 0.078 0.922 52 H 0.108 0.892 53 H 0.080 0.920 54 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 6.096 1.563 6.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.157 4.157 3 Si 0.698 3.302 4 C -0.116 4.116 5 C -0.197 4.197 6 C -0.265 4.265 7 C 0.376 3.624 8 O -0.473 6.473 9 N -0.360 5.360 10 C 0.029 3.971 11 C -0.048 4.048 12 C -0.069 4.069 13 C -0.140 4.140 14 C -0.142 4.142 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.145 4.145 18 C -0.189 4.189 19 C 0.022 3.978 20 H 0.106 0.894 21 O -0.376 6.376 22 C -0.157 4.157 23 C -0.012 4.012 24 C -0.091 4.091 25 C -0.163 4.163 26 C -0.169 4.169 27 C -0.025 4.025 28 N -0.099 5.099 29 H 0.245 0.755 30 H 0.128 0.872 31 H -0.218 1.218 32 H -0.198 1.198 33 H 0.176 0.824 34 H 0.242 0.758 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.247 0.753 45 H 0.129 0.871 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.108 0.892 50 H 0.080 0.920 51 H 0.097 0.903 52 H 0.126 0.874 53 H 0.098 0.902 54 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.261 5.101 2.166 5.985 hybrid contribution 0.353 -0.384 0.432 0.677 sum -1.908 4.717 2.598 5.713 Atomic orbital electron populations 1.86456 1.17058 1.81549 1.50750 1.25030 0.85143 1.11094 0.94393 0.93171 0.78617 0.73835 0.84546 1.20916 0.95883 0.95224 0.99573 1.21865 0.98565 1.02873 0.96364 1.19933 0.98039 1.06292 1.02233 1.17610 0.81526 0.79805 0.83458 1.90733 1.80207 1.38641 1.37692 1.45546 1.20282 1.38408 1.31746 1.21055 0.86003 0.97754 0.92297 1.20838 0.95419 0.96566 0.91946 1.19673 0.97107 0.95541 0.94559 1.21236 1.00542 1.00085 0.92138 1.21419 0.97287 0.97712 0.97800 1.21418 0.98668 0.95772 0.99434 1.21366 1.00219 1.00066 0.93043 1.21136 0.98112 0.97645 0.97603 1.23766 1.03008 0.94147 0.98020 1.22673 0.90199 0.96967 0.87929 0.89359 1.86447 1.51795 1.39482 1.59873 1.23154 0.97453 0.99219 0.95827 1.20525 0.91536 0.97961 0.91179 1.20432 0.99321 0.93469 0.95874 1.21713 0.95522 0.98043 1.01057 1.21971 0.99094 0.98836 0.97044 1.22554 0.81896 0.99669 0.98370 1.44038 1.18052 1.26895 1.20897 0.75452 0.87219 1.21828 1.19761 0.82356 0.75821 0.89976 0.93862 0.84281 0.84549 0.85054 0.85339 0.86296 0.89970 0.87305 0.75304 0.87119 0.91236 0.89734 0.90688 0.89209 0.92009 0.90301 0.87414 0.90209 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.34 10.28 -148.98 -1.53 0.81 16 2 C -0.05 0.12 3.00 71.24 0.21 0.34 16 3 Si 0.80 -3.88 31.29 68.60 2.15 -1.73 16 4 C -0.01 -0.01 6.15 40.99 0.25 0.24 16 5 C -0.17 -0.54 9.08 23.64 0.21 -0.33 16 6 C -0.26 -2.22 6.28 -19.12 -0.12 -2.34 16 7 C 0.59 7.18 7.81 86.61 0.68 7.86 16 8 O -0.59 -11.40 15.33 -4.11 -0.06 -11.47 16 9 N -0.71 -4.54 5.30 -466.52 -2.47 -7.02 16 10 C 0.15 1.00 4.93 86.38 0.43 1.42 16 11 C -0.05 -0.02 0.65 -52.40 -0.03 -0.06 16 12 C -0.07 -0.12 4.37 -19.87 -0.09 -0.21 16 13 C -0.12 0.01 8.37 22.27 0.19 0.20 16 14 C -0.12 -0.08 10.05 22.27 0.22 0.15 16 15 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 16 C -0.13 -0.43 10.05 22.27 0.22 -0.20 16 17 C -0.13 -0.49 9.39 22.27 0.21 -0.28 16 18 C -0.15 0.59 6.04 31.12 0.19 0.78 16 19 C 0.08 -0.22 5.28 31.12 0.16 -0.05 16 20 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 21 O -0.57 -0.16 11.51 -148.98 -1.71 -1.88 16 22 C -0.12 0.05 6.71 31.12 0.21 0.25 16 23 C 0.11 0.75 6.57 41.69 0.27 1.02 16 24 C -0.05 -0.30 5.33 30.07 0.16 -0.14 16 25 C -0.13 0.06 5.97 30.78 0.18 0.24 16 26 C -0.13 0.59 5.94 30.77 0.18 0.77 16 27 C 0.09 -0.27 6.22 86.40 0.54 0.27 16 28 N -0.42 -0.95 3.11 -493.17 -1.53 -2.48 16 29 H 0.40 -4.50 8.27 -74.06 -0.61 -5.11 16 30 H 0.11 -0.14 7.96 -2.39 -0.02 -0.16 16 31 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 32 H -0.27 0.41 6.77 99.48 0.67 1.09 16 33 H 0.16 -0.12 6.30 -2.91 -0.02 -0.13 16 34 H 0.41 0.91 6.73 -92.71 -0.62 0.29 16 35 H 0.08 0.76 5.92 -2.39 -0.01 0.75 16 36 H 0.04 0.49 8.13 -2.38 -0.02 0.47 16 37 H 0.14 -0.62 7.02 -2.91 -0.02 -0.64 16 38 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 39 H 0.13 -0.13 8.06 -2.91 -0.02 -0.16 16 40 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 41 H 0.12 0.38 8.03 -2.91 -0.02 0.36 16 42 H 0.08 -0.33 8.10 -2.38 -0.02 -0.35 16 43 H 0.11 -0.68 7.44 -2.39 -0.02 -0.70 16 44 H 0.40 -2.93 9.12 -74.06 -0.68 -3.61 16 45 H 0.11 -0.27 8.09 -2.39 -0.02 -0.29 16 46 H 0.07 0.17 8.10 -2.38 -0.02 0.15 16 47 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 0.78 7.39 -2.39 -0.02 0.76 16 49 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.06 0.05 8.12 -2.39 -0.02 0.03 16 51 H 0.08 -0.34 8.11 -2.39 -0.02 -0.36 16 52 H 0.11 -0.86 8.14 -2.38 -0.02 -0.88 16 53 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 54 H 0.12 -0.78 5.68 -2.39 -0.01 -0.79 16 Total: 0.00 -22.21 422.32 -1.62 -23.84 By element: Atomic # 1 Polarization: -8.99 SS G_CDS: -0.96 Total: -9.95 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.51 Total: 9.87 kcal Atomic # 7 Polarization: -5.49 SS G_CDS: -4.01 Total: -9.50 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -3.31 Total: -12.53 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.15 Total: -1.73 kcal Total: -22.21 -1.62 -23.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_16915396.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.130 kcal (2) G-P(sol) polarization free energy of solvation -22.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds