Wall clock time and date at job start Sat Mar 6 2021 23:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47184 * 2 1 4 4 C 1.50695 * 109.47534 * 120.00568 * 2 1 3 5 5 C 1.38709 * 120.03060 * 74.96929 * 4 2 1 6 6 O 1.35900 * 120.05456 * 0.05288 * 5 4 2 7 7 C 1.42901 * 116.99693 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46718 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99983 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99704 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00002 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47385 * 174.13693 * 11 10 8 13 13 C 1.50697 * 112.84908 * 299.66786 * 12 11 10 14 14 C 1.38234 * 120.00223 * 113.64162 * 13 12 11 15 15 C 1.38243 * 119.99801 * 179.76422 * 14 13 12 16 16 C 1.38234 * 119.99803 * 0.50309 * 15 14 13 17 17 C 1.38236 * 119.99972 * 359.74620 * 16 15 14 18 18 C 1.38227 * 120.00451 * 0.02562 * 17 16 15 19 19 C 1.53778 * 113.61712 * 168.46330 * 12 11 10 20 20 C 1.54051 * 86.98778 * 270.84231 * 19 12 11 21 21 H 1.09001 * 113.61533 * 220.01906 * 20 19 12 22 22 O 1.42899 * 113.69097 * 89.12565 * 20 19 12 23 23 C 1.53783 * 87.07793 * 334.56682 * 20 19 12 24 24 C 1.38755 * 119.88830 * 180.02562 * 5 4 2 25 25 C 1.38126 * 119.94396 * 0.02904 * 24 5 4 26 26 C 1.38284 * 120.05533 * 359.97280 * 25 24 5 27 27 C 1.38170 * 120.02610 * 254.99839 * 4 2 1 28 28 H 0.96698 * 114.00283 * 59.99554 * 1 2 3 29 29 H 1.08999 * 109.46847 * 240.00361 * 2 1 3 30 30 H 1.48503 * 109.99932 * 298.68349 * 3 2 1 31 31 H 1.48498 * 110.00170 * 60.00467 * 3 2 1 32 32 H 1.08999 * 109.47359 * 299.99433 * 7 6 5 33 33 H 1.09003 * 109.46976 * 59.99927 * 7 6 5 34 34 H 0.97003 * 119.99961 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47114 * 294.14542 * 11 10 8 36 36 H 1.09000 * 109.46721 * 54.13545 * 11 10 8 37 37 H 1.08001 * 120.00081 * 359.97438 * 14 13 12 38 38 H 1.08003 * 119.99586 * 180.23182 * 15 14 13 39 39 H 1.07999 * 119.99949 * 179.72508 * 16 15 14 40 40 H 1.08003 * 119.99329 * 179.97438 * 17 16 15 41 41 H 1.07998 * 120.00665 * 179.97438 * 18 17 16 42 42 H 1.09005 * 113.61180 * 25.43815 * 19 12 11 43 43 H 1.09002 * 113.61603 * 156.33482 * 19 12 11 44 44 H 0.96699 * 114.00091 * 82.46649 * 22 20 19 45 45 H 1.08994 * 113.61488 * 270.88463 * 23 20 19 46 46 H 1.09000 * 113.68946 * 139.98577 * 23 20 19 47 47 H 1.08004 * 120.02936 * 179.97438 * 24 5 4 48 48 H 1.08004 * 119.96934 * 179.97438 * 25 24 5 49 49 H 1.08000 * 119.94300 * 180.28230 * 26 25 24 50 50 H 1.08005 * 119.96950 * 359.97047 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.8692 -2.0941 1.3070 6 8 1.3563 -2.8107 0.2725 7 6 1.3241 -4.2316 0.4206 8 6 0.7266 -4.8521 -0.8160 9 8 0.3636 -4.1469 -1.7335 10 7 0.5946 -6.1907 -0.9018 11 6 0.0133 -6.7939 -2.1036 12 6 0.1116 -8.3177 -2.0082 13 6 1.5328 -8.8066 -1.8981 14 6 1.9649 -9.4196 -0.7369 15 6 3.2673 -9.8725 -0.6378 16 6 4.1404 -9.7029 -1.6960 17 6 3.7096 -9.0853 -2.8553 18 6 2.4061 -8.6367 -2.9562 19 6 -0.7131 -9.0563 -3.0754 20 6 -1.8874 -9.0163 -2.0790 21 1 -2.4735 -9.9351 -2.0577 22 8 -2.6969 -7.8442 -2.1924 23 6 -0.8338 -8.9316 -0.9620 24 6 2.3322 -2.7452 2.4414 25 6 2.8531 -2.0145 3.4915 26 6 2.9139 -0.6353 3.4126 27 6 2.4539 0.0158 2.2832 28 1 -0.3934 0.4417 -0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 1.5878 2.4585 -1.2242 31 1 1.5616 2.4679 1.2085 32 1 2.3383 -4.6054 0.5612 33 1 0.7171 -4.4929 1.2875 34 1 0.8846 -6.7547 -0.1678 35 1 -1.0335 -6.5017 -2.1868 36 1 0.5576 -6.4490 -2.9828 37 1 1.2841 -9.5478 0.0916 38 1 3.6038 -10.3548 0.2681 39 1 5.1591 -10.0528 -1.6170 40 1 4.3920 -8.9525 -3.6819 41 1 2.0697 -8.1538 -3.8617 42 1 -0.8844 -8.4698 -3.9781 43 1 -0.3531 -10.0634 -3.2858 44 1 -3.3614 -7.8915 -2.8933 45 1 -0.5067 -9.9046 -0.5956 46 1 -1.1013 -8.2449 -0.1589 47 1 2.2845 -3.8224 2.5037 48 1 3.2132 -2.5209 4.3749 49 1 3.3258 -0.0660 4.2329 50 1 2.5025 1.0931 2.2240 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_2989392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:25:18 Heat of formation + Delta-G solvation = -58.648667 kcal Electronic energy + Delta-G solvation = -33554.686202 eV Core-core repulsion = 29094.144010 eV Total energy + Delta-G solvation = -4460.542193 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.97150 -41.47201 -40.35392 -39.28421 -38.48413 -37.63986 -36.44001 -35.11910 -32.91002 -31.93513 -31.72993 -31.36782 -30.14408 -27.86888 -26.89794 -26.66239 -24.75051 -23.51448 -23.18805 -22.49756 -22.32400 -21.63743 -19.99644 -19.35229 -18.63722 -18.61386 -18.31192 -17.68562 -17.47102 -17.32517 -16.91447 -16.64533 -16.43046 -15.87619 -15.81432 -15.72617 -15.50757 -15.36210 -15.21954 -15.00062 -14.70930 -14.41709 -14.22518 -14.09996 -13.94842 -13.83634 -13.76017 -13.53654 -13.15509 -13.09044 -13.04905 -12.72258 -12.64847 -12.23225 -12.15134 -11.89875 -11.82521 -11.79413 -11.61392 -11.29180 -11.04658 -10.72048 -10.45235 -10.17350 -9.97762 -9.82655 -9.61821 -9.22788 -4.97545 0.22110 0.41215 0.42213 0.49086 1.26683 1.39542 1.44961 1.56110 1.87891 2.55202 2.65710 2.83118 3.14691 3.33991 3.42061 3.45314 3.56374 3.71263 3.74299 3.76477 3.90478 3.91775 3.97496 4.00489 4.13051 4.15162 4.15374 4.24250 4.28213 4.33130 4.43101 4.50923 4.51471 4.62302 4.65509 4.69204 4.73857 4.82530 4.85664 4.96638 4.98320 5.07624 5.13213 5.16271 5.19989 5.27086 5.28144 5.38272 5.51741 5.59323 5.64549 5.67087 5.74788 6.10312 6.23585 6.39942 6.54800 6.85274 7.05023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.088 4.088 3 Si 0.783 3.217 4 C -0.130 4.130 5 C 0.127 3.873 6 O -0.311 6.311 7 C 0.039 3.961 8 C 0.512 3.488 9 O -0.571 6.571 10 N -0.703 5.703 11 C 0.149 3.851 12 C -0.044 4.044 13 C -0.072 4.072 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.133 4.133 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.148 4.148 20 C 0.078 3.922 21 H 0.087 0.913 22 O -0.569 6.569 23 C -0.123 4.123 24 C -0.212 4.212 25 C -0.073 4.073 26 C -0.154 4.154 27 C -0.089 4.089 28 H 0.388 0.612 29 H 0.064 0.936 30 H -0.290 1.290 31 H -0.281 1.281 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.414 0.586 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.396 0.604 45 H 0.120 0.880 46 H 0.077 0.923 47 H 0.155 0.845 48 H 0.158 0.842 49 H 0.153 0.847 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -7.130 3.677 8.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.686 3.314 4 C -0.131 4.131 5 C 0.081 3.919 6 O -0.224 6.224 7 C -0.039 4.039 8 C 0.298 3.702 9 O -0.449 6.449 10 N -0.356 5.356 11 C 0.026 3.974 12 C -0.045 4.045 13 C -0.072 4.072 14 C -0.139 4.139 15 C -0.139 4.139 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.144 4.144 19 C -0.187 4.187 20 C 0.018 3.982 21 H 0.105 0.895 22 O -0.377 6.377 23 C -0.160 4.160 24 C -0.231 4.231 25 C -0.091 4.091 26 C -0.172 4.172 27 C -0.106 4.106 28 H 0.237 0.763 29 H 0.082 0.918 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.247 0.753 45 H 0.138 0.862 46 H 0.096 0.904 47 H 0.173 0.827 48 H 0.175 0.825 49 H 0.171 0.829 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.855 -5.875 3.855 8.015 hybrid contribution -1.394 -0.665 -1.196 1.953 sum 2.461 -6.540 2.658 7.477 Atomic orbital electron populations 1.86551 1.19013 1.80837 1.50180 1.25085 0.83835 1.12621 0.97972 0.94087 0.89802 0.70834 0.76665 1.18878 1.05696 0.90911 0.97611 1.19082 0.94196 0.91066 0.87533 1.86158 1.78117 1.18515 1.39643 1.22657 1.04302 0.80010 0.96950 1.20474 0.78528 0.82817 0.88353 1.90744 1.50395 1.62426 1.41380 1.45549 1.63486 1.05483 1.21127 1.21140 0.99084 0.90518 0.86634 1.20793 0.91077 0.92652 0.99964 1.19626 0.94236 0.98887 0.94427 1.21307 0.96428 0.98579 0.97556 1.21454 0.93741 0.99439 0.99301 1.21443 1.00667 0.99268 0.93721 1.21357 0.96081 0.98682 0.98691 1.21083 0.93975 1.00379 0.98965 1.23726 0.96284 1.01401 0.97250 1.22787 0.90709 0.88444 0.96214 0.89490 1.86443 1.51713 1.39571 1.59990 1.23296 0.93571 1.02787 0.96338 1.21594 1.05637 1.01829 0.94008 1.21413 0.95414 0.94085 0.98212 1.21406 1.02072 0.95196 0.98484 1.21160 0.96802 1.00336 0.92329 0.76318 0.91824 1.21726 1.20767 0.86008 0.86499 0.74899 0.90246 0.93047 0.83801 0.84196 0.85012 0.85575 0.86752 0.90727 0.87789 0.75344 0.86215 0.90445 0.82736 0.82476 0.82904 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -6.91 12.86 -148.98 -1.92 -8.83 16 2 C -0.09 -0.77 2.37 71.23 0.17 -0.61 16 3 Si 0.78 2.30 30.20 68.60 2.07 4.37 16 4 C -0.13 -1.13 5.30 -19.77 -0.10 -1.24 16 5 C 0.13 1.04 6.66 22.51 0.15 1.19 16 6 O -0.31 -3.49 9.00 -73.38 -0.66 -4.15 16 7 C 0.04 0.09 5.22 71.24 0.37 0.46 16 8 C 0.51 4.16 7.91 87.66 0.69 4.85 16 9 O -0.57 -11.02 16.49 16.01 0.26 -10.76 16 10 N -0.70 -1.05 5.30 -463.06 -2.45 -3.50 16 11 C 0.15 0.47 4.81 86.38 0.42 0.89 16 12 C -0.04 0.12 0.63 -52.40 -0.03 0.08 16 13 C -0.07 0.13 4.41 -19.87 -0.09 0.04 16 14 C -0.12 0.50 9.05 22.27 0.20 0.71 16 15 C -0.12 0.40 10.05 22.27 0.22 0.62 16 16 C -0.13 0.17 10.05 22.27 0.22 0.39 16 17 C -0.13 -0.06 10.05 22.27 0.22 0.16 16 18 C -0.13 -0.11 9.42 22.27 0.21 0.10 16 19 C -0.15 0.57 6.97 31.21 0.22 0.78 16 20 C 0.08 -0.33 5.28 31.21 0.16 -0.16 16 21 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 22 O -0.57 0.41 11.51 -148.98 -1.71 -1.30 16 23 C -0.12 0.63 6.10 31.12 0.19 0.82 16 24 C -0.21 -0.30 9.04 22.37 0.20 -0.10 16 25 C -0.07 0.07 10.04 22.25 0.22 0.29 16 26 C -0.15 -0.05 10.04 22.28 0.22 0.18 16 27 C -0.09 -0.36 8.66 22.25 0.19 -0.17 16 28 H 0.39 1.93 8.74 -74.06 -0.65 1.28 16 29 H 0.06 0.63 7.83 -2.39 -0.02 0.62 16 30 H -0.29 -2.11 7.11 99.48 0.71 -1.40 16 31 H -0.28 -1.95 6.75 99.48 0.67 -1.28 16 32 H 0.12 -0.50 7.66 -2.39 -0.02 -0.52 16 33 H 0.12 -0.36 7.66 -2.39 -0.02 -0.38 16 34 H 0.41 -1.93 8.25 -92.71 -0.76 -2.69 16 35 H 0.08 0.56 5.92 -2.39 -0.01 0.55 16 36 H 0.05 0.37 8.06 -2.39 -0.02 0.35 16 37 H 0.14 -1.25 6.44 -2.91 -0.02 -1.27 16 38 H 0.14 -1.00 8.06 -2.91 -0.02 -1.03 16 39 H 0.13 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 41 H 0.11 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.07 -0.19 8.10 -2.38 -0.02 -0.21 16 43 H 0.10 -0.52 8.09 -2.39 -0.02 -0.54 16 44 H 0.40 -3.05 9.12 -74.06 -0.68 -3.72 16 45 H 0.12 -1.03 6.82 -2.39 -0.02 -1.04 16 46 H 0.08 -0.29 8.10 -2.39 -0.02 -0.31 16 47 H 0.16 -0.76 6.30 -2.91 -0.02 -0.78 16 48 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16 49 H 0.15 -0.76 8.06 -2.91 -0.02 -0.78 16 50 H 0.14 0.18 4.90 -2.91 -0.01 0.17 16 Total: 0.00 -28.90 409.73 -1.42 -30.32 By element: Atomic # 1 Polarization: -14.37 SS G_CDS: -1.08 Total: -15.45 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.07 Total: 9.30 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -2.45 Total: -3.50 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -4.03 Total: -25.04 kcal Atomic # 14 Polarization: 2.30 SS G_CDS: 2.07 Total: 4.37 kcal Total: -28.90 -1.42 -30.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_2989392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.333 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds