Wall clock time and date at job start Sat Mar 6 2021 23:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86306 * 109.46867 * 2 1 4 4 C 1.50700 * 109.47480 * 239.99825 * 2 1 3 5 5 C 1.38259 * 119.94163 * 299.99772 * 4 2 1 6 6 C 1.38141 * 120.05540 * 179.97438 * 5 4 2 7 7 C 1.38734 * 119.94713 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05946 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99536 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46584 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00387 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99921 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99820 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47037 * 182.27959 * 13 12 10 15 15 C 1.50706 * 112.85088 * 65.24077 * 14 13 12 16 16 C 1.38229 * 120.00432 * 246.06143 * 15 14 13 17 17 C 1.38234 * 120.00110 * 179.78893 * 16 15 14 18 18 C 1.38237 * 119.99916 * 0.43824 * 17 16 15 19 19 C 1.38239 * 119.99739 * 359.81243 * 18 17 16 20 20 C 1.38233 * 119.99422 * 66.33203 * 15 14 13 21 21 C 1.53780 * 113.61541 * 294.04979 * 14 13 12 22 22 C 1.53777 * 87.07951 * 270.88255 * 21 14 13 23 23 H 1.09003 * 113.61825 * 219.93127 * 22 21 14 24 24 O 1.42903 * 113.61770 * 89.11666 * 22 21 14 25 25 C 1.53780 * 113.61661 * 196.43888 * 14 13 12 26 26 C 1.38738 * 119.88251 * 0.27313 * 7 6 5 27 27 C 1.38149 * 119.94280 * 359.47260 * 26 7 6 28 28 H 0.96701 * 113.99989 * 299.99877 * 1 2 3 29 29 H 1.09000 * 109.47243 * 119.99198 * 2 1 3 30 30 H 1.48504 * 109.99554 * 299.99478 * 3 2 1 31 31 H 1.48499 * 110.00081 * 61.31558 * 3 2 1 32 32 H 1.08008 * 119.97620 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.02797 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47265 * 60.00398 * 9 8 7 35 35 H 1.08997 * 109.47180 * 299.99344 * 9 8 7 36 36 H 0.96998 * 119.99923 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.46847 * 62.28379 * 13 12 10 38 38 H 1.08998 * 109.47279 * 302.28226 * 13 12 10 39 39 H 1.08007 * 119.99856 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.99963 * 180.27559 * 17 16 15 41 41 H 1.07993 * 119.99782 * 179.83521 * 18 17 16 42 42 H 1.08001 * 119.99468 * 179.97438 * 19 18 17 43 43 H 1.08004 * 120.00404 * 359.97438 * 20 15 14 44 44 H 1.08998 * 113.61384 * 25.42869 * 21 14 13 45 45 H 1.08997 * 113.61805 * 156.25170 * 21 14 13 46 46 H 0.96696 * 114.00247 * 180.02562 * 24 22 21 47 47 H 1.09002 * 113.61556 * 203.66479 * 25 14 13 48 48 H 1.08994 * 113.61248 * 334.56858 * 25 14 13 49 49 H 1.07995 * 120.02691 * 179.71551 * 26 7 6 50 50 H 1.07994 * 119.96630 * 180.23035 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2304 5 6 1.5968 -2.0342 -1.4480 6 6 2.0556 -2.6875 -2.5753 7 6 2.8533 -2.0145 -3.4893 8 8 3.3055 -2.6549 -4.5994 9 6 4.1225 -1.8998 -5.4963 10 6 4.5269 -2.7685 -6.6595 11 8 4.1520 -3.9206 -6.7151 12 7 5.3044 -2.2648 -7.6385 13 6 5.6980 -3.1094 -8.7689 14 6 6.6183 -2.3183 -9.7005 15 6 7.9316 -1.9557 -9.0563 16 6 8.2363 -0.6308 -8.8061 17 6 9.4391 -0.2986 -8.2112 18 6 10.3411 -1.2907 -7.8748 19 6 10.0385 -2.6152 -8.1298 20 6 8.8339 -2.9477 -8.7207 21 6 5.9237 -1.1334 -10.3922 22 6 5.5424 -2.1136 -11.5141 23 1 5.6229 -1.6860 -12.5136 24 8 4.2972 -2.7792 -11.2941 25 6 6.7694 -2.9461 -11.0962 26 6 3.1928 -0.6880 -3.2656 27 6 2.7270 -0.0376 -2.1392 28 1 -0.3933 0.4417 0.7651 29 1 1.7924 -0.5137 0.8900 30 1 1.5615 2.4678 -1.2086 31 1 1.5878 2.4587 1.2242 32 1 0.9761 -2.5579 -0.7359 33 1 1.7943 -3.7217 -2.7446 34 1 5.0145 -1.5556 -4.9730 35 1 3.5614 -1.0400 -5.8624 36 1 5.6039 -1.3433 -7.5942 37 1 4.8085 -3.4217 -9.3161 38 1 6.2245 -3.9892 -8.3991 39 1 7.5333 0.1446 -9.0727 40 1 9.6752 0.7362 -8.0117 41 1 11.2818 -1.0309 -7.4125 42 1 10.7434 -3.3903 -7.8673 43 1 8.5976 -3.9826 -8.9198 44 1 5.0670 -0.7468 -9.8403 45 1 6.6110 -0.3495 -10.7104 46 1 4.0521 -3.3973 -11.9962 47 1 7.6876 -2.6575 -11.6077 48 1 6.5949 -4.0219 -11.1122 49 1 3.8174 -0.1632 -3.9732 50 1 2.9880 0.9960 -1.9666 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_2989410.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:25:22 Heat of formation + Delta-G solvation = -60.836745 kcal Electronic energy + Delta-G solvation = -32788.300168 eV Core-core repulsion = 28327.663093 eV Total energy + Delta-G solvation = -4460.637075 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.94679 -41.41201 -40.34227 -39.26957 -38.91860 -37.33126 -36.41323 -35.08535 -32.50023 -31.90763 -31.82429 -31.69549 -30.36422 -27.95341 -26.89197 -26.13391 -24.71482 -23.92818 -23.18594 -22.38522 -22.20852 -21.62305 -19.97650 -19.49419 -18.62306 -18.56372 -18.28775 -17.66936 -17.47500 -17.31401 -16.78825 -16.64262 -16.41785 -15.82689 -15.78285 -15.72938 -15.64465 -15.36692 -15.19767 -14.84507 -14.47742 -14.40539 -14.20503 -14.14594 -14.01495 -13.97492 -13.72388 -13.50017 -13.39731 -13.15059 -13.03137 -12.69632 -12.49179 -12.20727 -12.18928 -11.92090 -11.86946 -11.75437 -11.59242 -11.26211 -11.02685 -10.70885 -10.47794 -10.13755 -10.04636 -9.80177 -9.59358 -9.22735 -4.91405 0.25958 0.30076 0.44620 0.51518 1.32682 1.42990 1.45956 1.62322 1.96945 2.56115 2.61346 2.85434 3.16926 3.36222 3.40682 3.46851 3.58181 3.73618 3.76238 3.78763 3.82294 3.95923 3.98205 4.02709 4.05173 4.15605 4.17515 4.28875 4.30490 4.41104 4.44473 4.45231 4.53795 4.64843 4.67734 4.71424 4.76077 4.84733 4.88557 4.95919 5.00706 5.09897 5.14960 5.16134 5.18902 5.22286 5.23774 5.30184 5.49410 5.61600 5.66897 5.67746 5.69452 6.12723 6.23855 6.42808 6.60826 6.87111 7.08638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.085 4.085 3 Si 0.768 3.232 4 C -0.124 4.124 5 C -0.061 4.061 6 C -0.166 4.166 7 C 0.119 3.881 8 O -0.318 6.318 9 C 0.038 3.962 10 C 0.512 3.488 11 O -0.574 6.574 12 N -0.702 5.702 13 C 0.149 3.851 14 C -0.044 4.044 15 C -0.072 4.072 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.134 4.134 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.123 4.123 22 C 0.077 3.923 23 H 0.086 0.914 24 O -0.568 6.568 25 C -0.149 4.149 26 C -0.200 4.200 27 C -0.077 4.077 28 H 0.394 0.606 29 H 0.093 0.907 30 H -0.295 1.295 31 H -0.289 1.289 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.415 0.585 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.396 0.604 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.165 0.835 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 6.973 -1.848 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.194 4.194 3 Si 0.673 3.327 4 C -0.124 4.124 5 C -0.079 4.079 6 C -0.185 4.185 7 C 0.074 3.926 8 O -0.232 6.232 9 C -0.040 4.040 10 C 0.298 3.702 11 O -0.453 6.453 12 N -0.356 5.356 13 C 0.025 3.975 14 C -0.045 4.045 15 C -0.072 4.072 16 C -0.138 4.138 17 C -0.140 4.140 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.160 4.160 22 C 0.018 3.982 23 H 0.104 0.896 24 O -0.377 6.377 25 C -0.187 4.187 26 C -0.218 4.218 27 C -0.094 4.094 28 H 0.244 0.756 29 H 0.110 0.890 30 H -0.223 1.223 31 H -0.216 1.216 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.252 0.748 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.097 0.903 45 H 0.138 0.862 46 H 0.246 0.754 47 H 0.121 0.879 48 H 0.093 0.907 49 H 0.182 0.818 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.005 6.806 -1.972 9.288 hybrid contribution -0.976 -0.601 0.064 1.148 sum 5.029 6.205 -1.909 8.212 Atomic orbital electron populations 1.86552 1.18798 1.80708 1.50983 1.25035 0.83879 1.12076 0.98363 0.94223 0.90187 0.71803 0.76475 1.19458 1.00997 0.94558 0.97394 1.20920 0.96881 0.94148 0.95953 1.20626 1.01502 1.01375 0.95008 1.19218 0.94794 0.92037 0.86553 1.86129 1.65100 1.40254 1.31684 1.22709 0.97642 0.94179 0.89430 1.20520 0.78301 0.87595 0.83813 1.90755 1.55678 1.20265 1.78558 1.45540 1.51265 1.16616 1.22145 1.21141 0.98226 0.92299 0.85797 1.20789 0.91668 0.98157 0.93877 1.19630 0.94783 0.93714 0.99031 1.21307 0.97660 0.95638 0.99196 1.21454 0.94026 1.00241 0.98236 1.21443 1.00413 0.93056 1.00260 1.21356 0.97147 0.97209 0.99134 1.21093 0.94444 0.99387 0.99554 1.23287 1.00371 0.95978 0.96325 1.22788 0.82999 0.93580 0.98816 0.89574 1.86446 1.38072 1.61542 1.51619 1.23726 1.00152 1.00769 0.94058 1.21475 1.05882 0.93332 1.01130 1.21014 0.95912 0.99937 0.92584 0.75578 0.88962 1.22261 1.21610 0.84679 0.85380 0.85613 0.85869 0.74786 0.90187 0.93106 0.83718 0.84203 0.85077 0.85621 0.86672 0.90277 0.86218 0.75370 0.87862 0.90730 0.81752 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.79 12.74 -148.98 -1.90 -3.69 16 2 C -0.09 -0.01 2.81 71.24 0.20 0.19 16 3 Si 0.77 -1.94 29.78 68.60 2.04 0.10 16 4 C -0.12 -0.42 5.42 -19.85 -0.11 -0.53 16 5 C -0.06 -0.34 9.60 22.25 0.21 -0.13 16 6 C -0.17 -1.26 9.99 22.37 0.22 -1.04 16 7 C 0.12 0.75 6.69 22.51 0.15 0.90 16 8 O -0.32 -2.82 9.67 -73.40 -0.71 -3.53 16 9 C 0.04 0.00 5.22 71.24 0.37 0.37 16 10 C 0.51 3.32 7.91 87.66 0.69 4.01 16 11 O -0.57 -10.37 16.50 15.99 0.26 -10.11 16 12 N -0.70 -0.08 5.18 -463.05 -2.40 -2.48 16 13 C 0.15 0.34 4.82 86.38 0.42 0.75 16 14 C -0.04 0.15 0.62 -52.40 -0.03 0.11 16 15 C -0.07 0.17 4.60 -19.87 -0.09 0.08 16 16 C -0.12 0.57 9.05 22.27 0.20 0.77 16 17 C -0.12 0.45 10.05 22.27 0.22 0.68 16 18 C -0.13 0.21 10.05 22.27 0.22 0.43 16 19 C -0.13 -0.01 10.05 22.27 0.22 0.21 16 20 C -0.13 -0.05 9.34 22.27 0.21 0.16 16 21 C -0.12 0.73 5.96 31.12 0.19 0.91 16 22 C 0.08 -0.37 5.28 31.21 0.16 -0.20 16 23 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 24 O -0.57 0.73 11.51 -148.98 -1.71 -0.98 16 25 C -0.15 0.64 6.96 31.21 0.22 0.86 16 26 C -0.20 -0.08 9.04 22.37 0.20 0.13 16 27 C -0.08 -0.04 8.66 22.25 0.19 0.16 16 28 H 0.39 -1.95 8.74 -74.06 -0.65 -2.59 16 29 H 0.09 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H -0.30 -1.23 7.11 99.48 0.71 -0.52 16 31 H -0.29 -0.54 7.11 99.48 0.71 0.16 16 32 H 0.14 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.13 -0.83 7.65 -2.39 -0.02 -0.85 16 35 H 0.12 -0.76 7.67 -2.39 -0.02 -0.78 16 36 H 0.42 -2.62 8.18 -92.71 -0.76 -3.37 16 37 H 0.08 0.50 5.94 -2.39 -0.01 0.48 16 38 H 0.05 0.31 7.98 -2.39 -0.02 0.29 16 39 H 0.15 -1.37 6.42 -2.91 -0.02 -1.39 16 40 H 0.14 -1.06 8.06 -2.91 -0.02 -1.09 16 41 H 0.13 -0.56 8.06 -2.91 -0.02 -0.59 16 42 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 43 H 0.12 0.05 8.06 -2.91 -0.02 0.02 16 44 H 0.08 -0.38 7.89 -2.39 -0.02 -0.40 16 45 H 0.12 -1.12 6.80 -2.39 -0.02 -1.13 16 46 H 0.40 -3.21 9.12 -74.06 -0.68 -3.89 16 47 H 0.10 -0.56 8.09 -2.39 -0.02 -0.58 16 48 H 0.07 -0.22 8.10 -2.39 -0.02 -0.24 16 49 H 0.17 -1.17 6.30 -2.91 -0.02 -1.19 16 50 H 0.15 -0.72 4.87 -2.91 -0.01 -0.73 16 Total: 0.00 -28.67 409.92 -1.37 -30.04 By element: Atomic # 1 Polarization: -17.15 SS G_CDS: -1.04 Total: -18.19 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 4.08 Total: 8.83 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -2.40 Total: -2.48 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -4.06 Total: -18.31 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.04 Total: 0.10 kcal Total: -28.67 -1.37 -30.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_2989410.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.794 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds