Wall clock time and date at job start Sat Mar 6 2021 23:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47215 * 2 1 4 4 C 1.50695 * 109.47254 * 239.99825 * 2 1 3 5 5 C 1.38241 * 119.94298 * 299.99989 * 4 2 1 6 6 C 1.38168 * 120.05664 * 179.97438 * 5 4 2 7 7 N 1.48006 * 120.03206 * 179.97438 * 6 5 4 8 8 O 1.21796 * 119.99545 * 359.97438 * 7 6 5 9 9 O 1.21798 * 119.99896 * 180.02562 * 7 6 5 10 10 C 1.38713 * 119.94442 * 359.97438 * 6 5 4 11 11 O 1.35896 * 120.05732 * 180.02562 * 10 6 5 12 12 C 1.42906 * 116.99920 * 180.02562 * 11 10 6 13 13 C 1.50703 * 109.47037 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00112 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99783 * 179.97438 * 13 12 11 16 16 C 1.46502 * 119.99797 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47033 * 176.30637 * 16 15 13 18 18 C 1.50702 * 112.84754 * 73.33030 * 17 16 15 19 19 C 1.38230 * 119.99903 * 246.01697 * 18 17 16 20 20 C 1.38236 * 120.00125 * 179.76632 * 19 18 17 21 21 C 1.38242 * 119.99894 * 0.50973 * 20 19 18 22 22 C 1.38234 * 119.99449 * 359.74677 * 21 20 19 23 23 C 1.38233 * 120.00403 * 359.97438 * 22 21 20 24 24 C 1.53778 * 113.61674 * 302.13148 * 17 16 15 25 25 C 1.53779 * 87.08618 * 270.88282 * 24 17 16 26 26 H 1.08990 * 113.61389 * 220.01905 * 25 24 17 27 27 O 1.42908 * 113.61084 * 89.19697 * 25 24 17 28 28 C 1.53784 * 87.07861 * 334.56859 * 25 24 17 29 29 C 1.38756 * 119.88634 * 359.97438 * 10 6 5 30 30 C 1.38126 * 119.94533 * 0.02562 * 29 10 6 31 31 H 0.96699 * 113.99838 * 59.99885 * 1 2 3 32 32 H 1.09004 * 109.46870 * 119.99581 * 2 1 3 33 33 H 1.48493 * 109.99874 * 298.67948 * 3 2 1 34 34 H 1.48499 * 109.99867 * 59.99922 * 3 2 1 35 35 H 1.08000 * 119.97149 * 0.25713 * 5 4 2 36 36 H 1.09004 * 109.46929 * 299.99355 * 12 11 10 37 37 H 1.08997 * 109.47436 * 59.99782 * 12 11 10 38 38 H 0.96994 * 120.00527 * 0.02562 * 15 13 12 39 39 H 1.08996 * 109.47314 * 296.31261 * 16 15 13 40 40 H 1.09001 * 109.46709 * 56.31290 * 16 15 13 41 41 H 1.08006 * 120.00303 * 0.02562 * 19 18 17 42 42 H 1.07998 * 120.00297 * 180.23166 * 20 19 18 43 43 H 1.07990 * 120.00279 * 179.72528 * 21 20 19 44 44 H 1.08002 * 119.99687 * 179.97438 * 22 21 20 45 45 H 1.07998 * 120.00220 * 179.97438 * 23 22 21 46 46 H 1.09002 * 113.61095 * 25.43708 * 24 17 16 47 47 H 1.09004 * 113.61653 * 156.24658 * 24 17 16 48 48 H 0.96698 * 113.99303 * 180.02562 * 27 25 24 49 49 H 1.09005 * 113.61320 * 270.88157 * 28 25 24 50 50 H 1.09001 * 113.61281 * 139.97745 * 28 25 24 51 51 H 1.08001 * 120.02981 * 179.97438 * 29 10 6 52 52 H 1.07999 * 119.97223 * 179.97438 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5966 -2.0339 -1.4479 6 6 2.0555 -2.6874 -2.5755 7 7 1.6973 -4.1046 -2.8076 8 8 0.9981 -4.6954 -2.0042 9 8 2.1025 -4.6802 -3.8016 10 6 2.8522 -2.0142 -3.4899 11 8 3.3043 -2.6545 -4.6000 12 6 4.1204 -1.8992 -5.4976 13 6 4.5249 -2.7679 -6.6607 14 8 4.1516 -3.9205 -6.7153 15 7 5.3016 -2.2639 -7.6400 16 6 5.6953 -3.1086 -8.7704 17 6 6.4910 -2.2752 -9.7770 18 6 7.8833 -1.9528 -9.2989 19 6 8.2349 -0.6440 -9.0268 20 6 9.5106 -0.3488 -8.5836 21 6 10.4379 -1.3613 -8.4227 22 6 10.0879 -2.6696 -8.6999 23 6 8.8104 -2.9654 -9.1376 24 6 5.7236 -1.0530 -10.3081 25 6 5.1829 -1.9722 -11.4160 26 1 5.1345 -1.4947 -12.3945 27 8 3.9698 -2.6405 -11.0639 28 6 6.4428 -2.8297 -11.2106 29 6 3.1858 -0.6854 -3.2698 30 6 2.7245 -0.0366 -2.1410 31 1 -0.3933 0.4417 -0.7650 32 1 1.7922 -0.5138 0.8901 33 1 1.5879 2.4585 -1.2242 34 1 1.5615 2.4679 1.2085 35 1 0.9722 -2.5563 -0.7382 36 1 3.5586 -1.0398 -5.8637 37 1 5.0124 -1.5542 -4.9747 38 1 5.6005 -1.3422 -7.5962 39 1 6.3131 -3.9316 -8.4112 40 1 4.8035 -3.5077 -9.2536 41 1 7.5117 0.1476 -9.1564 42 1 9.7842 0.6733 -8.3675 43 1 11.4359 -1.1303 -8.0808 44 1 10.8125 -3.4606 -8.5746 45 1 8.5371 -3.9874 -9.3545 46 1 4.9537 -0.6909 -9.6266 47 1 6.3709 -0.2571 -10.6764 48 1 3.6250 -3.2204 -11.7566 49 1 7.2868 -2.5203 -11.8271 50 1 6.2535 -3.9021 -11.2578 51 1 3.8063 -0.1591 -3.9800 52 1 2.9843 0.9974 -1.9690 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_4549638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:26:03 Heat of formation + Delta-G solvation = -56.886958 kcal Electronic energy + Delta-G solvation = -39788.968676 eV Core-core repulsion = 34497.486441 eV Total energy + Delta-G solvation = -5291.482235 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 415.160 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.29892 -41.98606 -41.63860 -40.48756 -39.42140 -39.20428 -37.62443 -37.48277 -36.40462 -35.06110 -33.49461 -32.28612 -31.90484 -31.70024 -30.55119 -28.06832 -27.82283 -26.91362 -26.47848 -24.74156 -23.96586 -23.18035 -22.82732 -22.31225 -21.71171 -20.54180 -19.99738 -19.77977 -19.17558 -18.64922 -18.59441 -18.47364 -18.21241 -17.66987 -17.59718 -17.21902 -16.83825 -16.44699 -16.35286 -16.12666 -15.87460 -15.77698 -15.73156 -15.51755 -15.20012 -14.95904 -14.74571 -14.39845 -14.26605 -14.10957 -14.01399 -13.84445 -13.68537 -13.51318 -13.23149 -13.17435 -13.02901 -12.71102 -12.68469 -12.38932 -12.37885 -12.27973 -12.21584 -12.19585 -11.86259 -11.81247 -11.59136 -11.23754 -11.02483 -10.84398 -10.75375 -10.71192 -10.11214 -9.80677 -9.79066 -9.58609 -4.91385 -1.31774 -0.24856 0.15288 0.35069 0.45373 0.52425 1.20017 1.26970 1.46795 1.61121 2.01902 2.04693 2.31217 2.86070 3.10733 3.17800 3.22672 3.33387 3.39635 3.44054 3.51154 3.63093 3.71133 3.75841 3.76990 3.77877 3.89312 3.97969 4.00369 4.16700 4.18382 4.28994 4.31345 4.39188 4.45189 4.55030 4.55767 4.63418 4.66363 4.72003 4.76633 4.83373 4.85123 4.89691 5.01303 5.07145 5.10650 5.17546 5.18714 5.20186 5.23245 5.31685 5.62299 5.67763 5.70327 5.74613 6.13717 6.41257 6.42819 6.45084 6.86399 7.14031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.091 4.091 3 Si 0.789 3.211 4 C -0.147 4.147 5 C -0.003 4.003 6 C -0.105 4.105 7 N 0.034 4.966 8 O -0.200 6.200 9 O -0.177 6.177 10 C 0.193 3.807 11 O -0.291 6.291 12 C 0.027 3.973 13 C 0.506 3.494 14 O -0.567 6.567 15 N -0.700 5.700 16 C 0.150 3.850 17 C -0.043 4.043 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.128 4.128 24 C -0.120 4.120 25 C 0.076 3.924 26 H 0.085 0.915 27 O -0.568 6.568 28 C -0.151 4.151 29 C -0.190 4.190 30 C -0.003 4.003 31 H 0.389 0.611 32 H 0.127 0.873 33 H -0.260 1.260 34 H -0.309 1.309 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.417 0.583 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.130 0.870 44 H 0.124 0.876 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.395 0.605 49 H 0.102 0.898 50 H 0.071 0.929 51 H 0.205 0.795 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 15.031 -4.110 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.198 4.198 3 Si 0.692 3.308 4 C -0.149 4.149 5 C -0.022 4.022 6 C -0.190 4.190 7 N 0.544 4.456 8 O -0.408 6.408 9 O -0.390 6.390 10 C 0.143 3.857 11 O -0.201 6.201 12 C -0.050 4.050 13 C 0.292 3.708 14 O -0.444 6.444 15 N -0.355 5.355 16 C 0.027 3.973 17 C -0.044 4.044 18 C -0.072 4.072 19 C -0.136 4.136 20 C -0.139 4.139 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.146 4.146 24 C -0.157 4.157 25 C 0.017 3.983 26 H 0.103 0.897 27 O -0.376 6.376 28 C -0.189 4.189 29 C -0.208 4.208 30 C -0.021 4.021 31 H 0.239 0.761 32 H 0.145 0.855 33 H -0.186 1.186 34 H -0.237 1.237 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.254 0.746 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.132 0.868 46 H 0.101 0.899 47 H 0.139 0.861 48 H 0.245 0.755 49 H 0.121 0.879 50 H 0.090 0.910 51 H 0.222 0.778 52 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 8.141 15.442 -3.048 17.720 hybrid contribution -1.209 -1.633 -0.922 2.232 sum 6.932 13.809 -3.971 15.953 Atomic orbital electron populations 1.86631 1.18486 1.80464 1.50324 1.25523 0.83614 1.13113 0.97510 0.94166 0.89283 0.69898 0.77476 1.20386 1.02103 0.92540 0.99847 1.20849 0.94143 0.94789 0.92403 1.20870 1.13491 0.81519 1.03124 1.43904 0.98207 1.04015 0.99444 1.94495 1.35977 1.68328 1.42007 1.94689 1.56475 1.69411 1.18437 1.19002 0.89661 0.92134 0.84917 1.86476 1.63623 1.39740 1.30275 1.23084 0.98108 0.94412 0.89401 1.20485 0.78603 0.87735 0.83965 1.90840 1.55189 1.20232 1.78174 1.45483 1.51412 1.16596 1.21966 1.21087 0.98610 0.92186 0.85443 1.20768 0.91238 0.98081 0.94304 1.19639 0.94196 0.93786 0.99538 1.21312 0.97114 0.95876 0.99256 1.21464 0.93560 1.00071 0.98834 1.21443 1.00541 0.93057 1.00209 1.21349 0.96634 0.97465 0.99520 1.21100 0.93878 0.99325 1.00333 1.23279 0.98939 0.95836 0.97655 1.22740 0.83401 0.93658 0.98491 0.89695 1.86461 1.40097 1.64250 1.46826 1.23699 0.99841 1.00943 0.94456 1.21806 1.06165 0.90411 1.02413 1.21715 0.89348 1.01283 0.89706 0.76146 0.85496 1.18603 1.23725 0.83116 0.83975 0.83894 0.74591 0.93381 0.90523 0.83408 0.84078 0.85158 0.85783 0.86779 0.89867 0.86095 0.75491 0.87917 0.90990 0.77820 0.79387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.66 12.77 -148.98 -1.90 -1.24 16 2 C -0.09 0.55 2.82 71.23 0.20 0.76 16 3 Si 0.79 -7.87 29.78 68.60 2.04 -5.82 16 4 C -0.15 0.80 5.39 -19.85 -0.11 0.69 16 5 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 6 C -0.10 -0.82 6.87 36.47 0.25 -0.57 16 7 N 0.03 0.61 4.45 -46.24 -0.21 0.41 16 8 O -0.20 -3.89 18.45 18.89 0.35 -3.54 16 9 O -0.18 -4.10 17.24 25.61 0.44 -3.66 16 10 C 0.19 0.32 6.67 22.51 0.15 0.47 16 11 O -0.29 -1.80 7.68 -63.35 -0.49 -2.29 16 12 C 0.03 -0.14 5.22 71.24 0.37 0.24 16 13 C 0.51 2.09 7.91 87.66 0.69 2.78 16 14 O -0.57 -10.13 16.50 16.00 0.26 -9.87 16 15 N -0.70 1.67 5.08 -463.06 -2.35 -0.68 16 16 C 0.15 0.18 4.86 86.38 0.42 0.60 16 17 C -0.04 0.20 0.65 -52.40 -0.03 0.16 16 18 C -0.07 0.26 4.85 -19.87 -0.10 0.16 16 19 C -0.12 0.77 9.05 22.27 0.20 0.97 16 20 C -0.12 0.63 10.05 22.27 0.22 0.86 16 21 C -0.13 0.34 10.05 22.27 0.22 0.56 16 22 C -0.13 0.07 10.05 22.27 0.22 0.29 16 23 C -0.13 0.04 9.23 22.27 0.21 0.25 16 24 C -0.12 0.93 5.87 31.12 0.18 1.12 16 25 C 0.08 -0.43 5.27 31.12 0.16 -0.26 16 26 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 27 O -0.57 0.93 11.59 -148.98 -1.73 -0.79 16 28 C -0.15 0.73 6.92 31.12 0.22 0.95 16 29 C -0.19 1.89 9.04 22.37 0.20 2.10 16 30 C 0.00 0.04 8.66 22.25 0.19 0.23 16 31 H 0.39 -2.92 8.70 -74.06 -0.64 -3.57 16 32 H 0.13 -0.85 7.96 -2.38 -0.02 -0.87 16 33 H -0.26 2.30 7.11 99.48 0.71 3.01 16 34 H -0.31 -0.02 7.11 99.48 0.71 0.69 16 35 H 0.15 0.63 7.61 -2.91 -0.02 0.61 16 36 H 0.14 -1.96 7.66 -2.39 -0.02 -1.98 16 37 H 0.14 -1.98 7.66 -2.39 -0.02 -2.00 16 38 H 0.42 -4.16 7.90 -92.71 -0.73 -4.90 16 39 H 0.05 0.26 7.80 -2.39 -0.02 0.24 16 40 H 0.08 0.46 6.06 -2.39 -0.01 0.45 16 41 H 0.15 -1.76 6.42 -2.91 -0.02 -1.78 16 42 H 0.14 -1.31 8.06 -2.91 -0.02 -1.34 16 43 H 0.13 -0.67 8.06 -2.92 -0.02 -0.69 16 44 H 0.12 -0.26 8.06 -2.91 -0.02 -0.29 16 45 H 0.11 0.00 8.06 -2.91 -0.02 -0.02 16 46 H 0.08 -0.64 7.36 -2.39 -0.02 -0.66 16 47 H 0.12 -1.37 6.80 -2.38 -0.02 -1.38 16 48 H 0.39 -3.13 9.12 -74.06 -0.68 -3.81 16 49 H 0.10 -0.61 8.10 -2.38 -0.02 -0.63 16 50 H 0.07 -0.21 8.10 -2.39 -0.02 -0.23 16 51 H 0.20 -4.05 6.30 -2.91 -0.02 -4.07 16 52 H 0.19 -3.59 4.87 -2.91 -0.01 -3.60 16 Total: 0.00 -41.99 435.09 -0.47 -42.47 By element: Atomic # 1 Polarization: -26.54 SS G_CDS: -0.99 Total: -27.52 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 4.09 Total: 12.54 kcal Atomic # 7 Polarization: 2.29 SS G_CDS: -2.56 Total: -0.27 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -3.06 Total: -21.39 kcal Atomic # 14 Polarization: -7.87 SS G_CDS: 2.04 Total: -5.82 kcal Total: -41.99 -0.47 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_4549638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.421 kcal (2) G-P(sol) polarization free energy of solvation -41.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds