Wall clock time and date at job start Sat Mar 6 2021 23:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86297 * 109.47730 * 2 1 4 4 C 1.50698 * 109.47327 * 120.00339 * 2 1 3 5 5 C 1.38267 * 119.94372 * 64.99212 * 4 2 1 6 6 C 1.38152 * 120.05735 * 180.02562 * 5 4 2 7 7 C 1.38737 * 119.94089 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05070 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99695 * 180.02562 * 8 7 6 10 10 F 1.39901 * 109.46995 * 59.99436 * 9 8 7 11 11 F 1.39903 * 109.46870 * 299.99654 * 9 8 7 12 12 C 1.50693 * 109.47365 * 179.97438 * 9 8 7 13 13 O 1.21285 * 119.99639 * 0.02562 * 12 9 8 14 14 N 1.34775 * 120.00622 * 179.97438 * 12 9 8 15 15 C 1.46493 * 120.00414 * 180.02562 * 14 12 9 16 16 C 1.53001 * 109.47221 * 185.39076 * 15 14 12 17 17 C 1.50701 * 112.85111 * 54.23551 * 16 15 14 18 18 C 1.38231 * 119.99781 * 76.65613 * 17 16 15 19 19 C 1.38245 * 119.99799 * 179.74769 * 18 17 16 20 20 C 1.38234 * 119.99541 * 0.54667 * 19 18 17 21 21 C 1.38236 * 120.00290 * 359.71129 * 20 19 18 22 22 C 1.38231 * 120.00055 * 256.93308 * 17 16 15 23 23 C 1.53782 * 113.69144 * 282.96744 * 16 15 14 24 24 C 1.53776 * 87.08245 * 270.87305 * 23 16 15 25 25 H 1.09001 * 113.69089 * 220.00797 * 24 23 16 26 26 O 1.42907 * 113.61678 * 89.11387 * 24 23 16 27 27 C 1.53779 * 87.08299 * 334.56671 * 24 23 16 28 28 C 1.38727 * 119.88936 * 0.27980 * 7 6 5 29 29 C 1.38154 * 119.94483 * 359.42510 * 28 7 6 30 30 H 0.96701 * 113.99993 * 300.00264 * 1 2 3 31 31 H 1.09003 * 109.47287 * 239.99859 * 2 1 3 32 32 H 1.48504 * 109.99867 * 300.00249 * 3 2 1 33 33 H 1.48504 * 109.99932 * 61.31989 * 3 2 1 34 34 H 1.07998 * 119.97301 * 359.97438 * 5 4 2 35 35 H 1.07993 * 120.02937 * 179.97438 * 6 5 4 36 36 H 0.97003 * 119.99607 * 0.02562 * 14 12 9 37 37 H 1.09007 * 109.47181 * 65.39108 * 15 14 12 38 38 H 1.08998 * 109.47195 * 305.39371 * 15 14 12 39 39 H 1.07994 * 120.00185 * 0.02562 * 18 17 16 40 40 H 1.07997 * 119.99934 * 180.27412 * 19 18 17 41 41 H 1.07999 * 119.99714 * 179.72544 * 20 19 18 42 42 H 1.08001 * 119.99826 * 179.97438 * 21 20 19 43 43 H 1.08006 * 119.99972 * 359.97438 * 22 17 16 44 44 H 1.09001 * 113.61737 * 156.32309 * 23 16 15 45 45 H 1.09001 * 113.61221 * 25.42339 * 23 16 15 46 46 H 0.96702 * 113.99957 * 82.50086 * 26 24 23 47 47 H 1.08999 * 113.61829 * 139.98018 * 27 24 23 48 48 H 1.08998 * 113.61495 * 270.88483 * 27 24 23 49 49 H 1.07999 * 120.02636 * 179.72151 * 28 7 6 50 50 H 1.07997 * 119.96960 * 180.27964 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6839 -2.0606 1.3971 6 6 2.1429 -2.7141 2.5244 7 6 2.8531 -2.0146 3.4894 8 8 3.3061 -2.6554 4.5989 9 6 4.0294 -1.8721 5.5505 10 9 3.2126 -0.8382 6.0205 11 9 5.1650 -1.3287 4.9403 12 6 4.4483 -2.7452 6.7051 13 8 4.1566 -3.9224 6.7122 14 7 5.1479 -2.2182 7.7294 15 6 5.5556 -3.0670 8.8516 16 6 6.2118 -2.2044 9.9315 17 6 5.3413 -1.0559 10.3723 18 6 4.2748 -1.2834 11.2216 19 6 3.4794 -0.2291 11.6301 20 6 3.7439 1.0509 11.1801 21 6 4.8073 1.2776 10.3265 22 6 5.6060 0.2241 9.9226 23 6 7.6554 -1.7912 9.5996 24 6 8.1027 -3.0902 10.2905 25 1 8.9996 -2.9760 10.8993 26 8 8.1692 -4.2135 9.4096 27 6 6.7964 -3.0176 11.0986 28 6 3.0955 -0.6590 3.3222 29 6 2.6396 -0.0113 2.1902 30 1 -0.3933 0.4417 0.7650 31 1 1.7923 -0.5139 -0.8900 32 1 1.5616 2.4678 -1.2085 33 1 1.5881 2.4585 1.2243 34 1 1.1306 -2.6045 0.6459 35 1 1.9490 -3.7685 2.6544 36 1 5.3815 -1.2767 7.7236 37 1 6.2673 -3.8149 8.5017 38 1 4.6798 -3.5654 9.2671 39 1 4.0655 -2.2841 11.5697 40 1 2.6487 -0.4062 12.2972 41 1 3.1198 1.8739 11.4957 42 1 5.0136 2.2776 9.9746 43 1 6.4369 0.4012 9.2557 44 1 7.9807 -0.8878 10.1157 45 1 7.8686 -1.7693 8.5309 46 1 8.9886 -4.2646 8.8986 47 1 6.3160 -3.9857 11.2400 48 1 6.8867 -2.4495 12.0245 49 1 3.6443 -0.1113 4.0741 50 1 2.8320 1.0431 2.0575 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_4549640.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:26:08 Heat of formation + Delta-G solvation = -152.839098 kcal Electronic energy + Delta-G solvation = -39417.833216 eV Core-core repulsion = 34014.298668 eV Total energy + Delta-G solvation = -5403.534547 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.94140 -48.91054 -42.02267 -41.41629 -40.75826 -39.35485 -39.27442 -37.40189 -36.59738 -35.35623 -32.47388 -32.09159 -31.88966 -31.76786 -30.10088 -27.96543 -26.95416 -26.24245 -24.87864 -24.30257 -23.23635 -22.79894 -22.45813 -22.22176 -20.74860 -20.43076 -19.74871 -19.45186 -18.63169 -18.58699 -17.74330 -17.71866 -17.39057 -16.93623 -16.69576 -16.65545 -16.33659 -16.16687 -15.94968 -15.80952 -15.78960 -15.51564 -15.44051 -15.40197 -15.24794 -15.15691 -15.03768 -14.54760 -14.42837 -14.40817 -14.28436 -14.24498 -14.16825 -13.69262 -13.56457 -13.16986 -13.08929 -13.05238 -12.75308 -12.45087 -12.26504 -12.23125 -11.97486 -11.78003 -11.72253 -11.59184 -11.18189 -10.78590 -10.64139 -10.45391 -10.20338 -9.84549 -9.65670 -9.62849 -4.93176 -0.00558 0.13728 0.39028 0.41438 0.47596 0.60180 1.29273 1.58303 1.64253 1.93777 1.94683 2.43018 2.69674 2.80909 3.13820 3.18310 3.37444 3.39308 3.46096 3.52089 3.63145 3.65955 3.68251 3.69802 3.94752 4.07452 4.10485 4.13876 4.18446 4.26836 4.37638 4.39272 4.46917 4.58247 4.59544 4.66981 4.72824 4.75418 4.81319 4.82184 4.85853 4.88811 5.00167 5.02592 5.06940 5.13408 5.15436 5.20399 5.32389 5.36271 5.56808 5.62640 5.63023 5.75648 5.82143 6.08296 6.37788 6.46884 6.89478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.078 4.078 3 Si 0.763 3.237 4 C -0.138 4.138 5 C -0.056 4.056 6 C -0.136 4.136 7 C 0.085 3.915 8 O -0.305 6.305 9 C 0.436 3.564 10 F -0.173 7.173 11 F -0.168 7.168 12 C 0.513 3.487 13 O -0.508 6.508 14 N -0.679 5.679 15 C 0.144 3.856 16 C -0.049 4.049 17 C -0.076 4.076 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.154 4.154 24 C 0.079 3.921 25 H 0.088 0.912 26 O -0.568 6.568 27 C -0.115 4.115 28 C -0.194 4.194 29 C -0.078 4.078 30 H 0.386 0.614 31 H 0.131 0.869 32 H -0.301 1.301 33 H -0.281 1.281 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.417 0.583 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.398 0.602 47 H 0.074 0.926 48 H 0.112 0.888 49 H 0.140 0.860 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 4.549 2.872 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.187 4.187 3 Si 0.668 3.332 4 C -0.138 4.138 5 C -0.074 4.074 6 C -0.154 4.154 7 C 0.042 3.958 8 O -0.222 6.222 9 C 0.358 3.642 10 F -0.154 7.154 11 F -0.150 7.150 12 C 0.291 3.709 13 O -0.382 6.382 14 N -0.332 5.332 15 C 0.022 3.978 16 C -0.049 4.049 17 C -0.076 4.076 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.191 4.191 24 C 0.020 3.980 25 H 0.106 0.894 26 O -0.377 6.377 27 C -0.153 4.153 28 C -0.212 4.212 29 C -0.096 4.096 30 H 0.235 0.765 31 H 0.149 0.851 32 H -0.229 1.229 33 H -0.208 1.208 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.254 0.746 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.128 0.872 45 H 0.101 0.899 46 H 0.249 0.751 47 H 0.093 0.907 48 H 0.131 0.869 49 H 0.158 0.842 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.498 3.924 2.657 7.258 hybrid contribution -0.781 0.643 0.457 1.110 sum 4.716 4.567 3.114 7.266 Atomic orbital electron populations 1.86582 1.18377 1.80343 1.50170 1.25184 0.83469 1.11696 0.98329 0.94094 0.90356 0.72187 0.76535 1.20418 1.00827 0.94956 0.97630 1.21080 0.96477 0.93838 0.96045 1.20717 1.00029 1.01546 0.93156 1.19274 0.97597 0.92337 0.86561 1.86652 1.68350 1.37199 1.29960 1.21708 0.76578 0.79454 0.86421 1.93192 1.73228 1.60475 1.88546 1.93193 1.51125 1.86490 1.84148 1.19388 0.80853 0.87525 0.83111 1.90857 1.54049 1.15812 1.77480 1.45682 1.53282 1.14893 1.19333 1.21488 0.99857 0.92346 0.84115 1.20848 0.94134 0.93917 0.96039 1.19653 0.96026 0.94140 0.97798 1.21156 0.95281 0.99451 0.98262 1.21394 0.99914 0.93177 1.00215 1.21455 0.98233 0.97396 0.98054 1.21446 0.95139 1.00001 0.97551 1.21275 1.00433 0.91836 1.00657 1.23804 0.93031 0.99561 1.02714 1.22703 0.98224 0.85465 0.91595 0.89438 1.86420 1.45791 1.46686 1.58794 1.23145 0.95141 1.00365 0.96609 1.21595 1.05426 0.92738 1.01466 1.21057 0.95865 1.00545 0.92088 0.76454 0.85140 1.22891 1.20770 0.83065 0.83762 0.74559 0.88325 0.91461 0.85866 0.85322 0.85115 0.84414 0.84103 0.87158 0.89882 0.75131 0.90712 0.86934 0.84223 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.05 12.83 -148.98 -1.91 -2.97 16 2 C -0.08 0.10 2.80 71.24 0.20 0.30 16 3 Si 0.76 -1.91 29.88 68.60 2.05 0.14 16 4 C -0.14 -0.06 5.35 -19.85 -0.11 -0.17 16 5 C -0.06 -0.09 9.68 22.26 0.22 0.12 16 6 C -0.14 -0.62 9.99 22.37 0.22 -0.40 16 7 C 0.08 0.60 6.48 22.51 0.15 0.75 16 8 O -0.30 -3.04 9.60 -73.39 -0.70 -3.75 16 9 C 0.44 2.66 2.05 71.23 0.15 2.80 16 10 F -0.17 -0.85 15.28 44.97 0.69 -0.17 16 11 F -0.17 -0.56 15.31 44.97 0.69 0.13 16 12 C 0.51 3.67 7.34 87.66 0.64 4.31 16 13 O -0.51 -7.33 16.49 15.99 0.26 -7.07 16 14 N -0.68 -0.55 5.28 -463.07 -2.45 -3.00 16 15 C 0.14 0.08 4.95 86.38 0.43 0.50 16 16 C -0.05 0.20 0.70 -52.40 -0.04 0.16 16 17 C -0.08 0.19 4.25 -19.87 -0.08 0.10 16 18 C -0.12 0.03 9.39 22.27 0.21 0.24 16 19 C -0.13 -0.01 10.05 22.27 0.22 0.22 16 20 C -0.13 0.11 10.05 22.27 0.22 0.33 16 21 C -0.12 0.31 10.05 22.27 0.22 0.53 16 22 C -0.12 0.47 8.25 22.27 0.18 0.65 16 23 C -0.15 1.17 6.05 31.12 0.19 1.36 16 24 C 0.08 -0.49 5.28 31.12 0.16 -0.33 16 25 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 26 O -0.57 1.99 11.52 -148.98 -1.72 0.27 16 27 C -0.11 0.52 6.73 31.12 0.21 0.73 16 28 C -0.19 -0.75 8.26 22.37 0.18 -0.56 16 29 C -0.08 -0.04 8.66 22.26 0.19 0.16 16 30 H 0.39 -1.27 8.70 -74.06 -0.64 -1.92 16 31 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 32 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 33 H -0.28 -0.30 7.01 99.48 0.70 0.40 16 34 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 35 H 0.14 0.42 8.06 -2.91 -0.02 0.39 16 36 H 0.42 -1.33 7.39 -92.71 -0.68 -2.01 16 37 H 0.10 0.25 5.95 -2.38 -0.01 0.23 16 38 H 0.07 0.24 8.13 -2.39 -0.02 0.22 16 39 H 0.12 -0.17 8.04 -2.91 -0.02 -0.19 16 40 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 41 H 0.13 -0.45 8.06 -2.91 -0.02 -0.47 16 42 H 0.14 -0.82 8.06 -2.91 -0.02 -0.84 16 43 H 0.14 -1.14 7.01 -2.91 -0.02 -1.16 16 44 H 0.11 -1.05 7.43 -2.39 -0.02 -1.07 16 45 H 0.08 -0.65 8.10 -2.39 -0.02 -0.67 16 46 H 0.40 -4.24 9.12 -74.06 -0.68 -4.92 16 47 H 0.07 -0.16 8.10 -2.39 -0.02 -0.18 16 48 H 0.11 -0.70 8.09 -2.39 -0.02 -0.72 16 49 H 0.14 0.31 5.10 -2.91 -0.01 0.30 16 50 H 0.15 -0.60 4.84 -2.91 -0.01 -0.62 16 Total: 0.00 -20.20 419.05 -0.25 -20.45 By element: Atomic # 1 Polarization: -14.92 SS G_CDS: -0.94 Total: -15.86 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 3.78 Total: 11.82 kcal Atomic # 7 Polarization: -0.55 SS G_CDS: -2.45 Total: -3.00 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -4.07 Total: -13.51 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 1.38 Total: -0.04 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: 2.05 Total: 0.14 kcal Total: -20.20 -0.25 -20.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_4549640.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.391 kcal (2) G-P(sol) polarization free energy of solvation -20.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds