Wall clock time and date at job start Sat Mar 6 2021 23:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86305 * 109.47165 * 2 1 4 4 C 1.50698 * 109.47391 * 120.00314 * 2 1 3 5 5 C 1.38251 * 119.97128 * 245.00207 * 4 2 1 6 6 C 1.38281 * 120.11001 * 180.02562 * 5 4 2 7 7 C 1.38123 * 120.06236 * 359.97438 * 6 5 4 8 8 C 1.38758 * 119.93754 * 359.97438 * 7 6 5 9 9 O 1.35902 * 120.05337 * 180.02562 * 8 7 6 10 10 C 1.42905 * 117.00004 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.47293 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00115 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99948 * 179.72049 * 13 11 10 15 15 C 1.53003 * 109.47403 * 174.70037 * 14 13 11 16 16 C 1.50698 * 112.85054 * 72.05689 * 15 14 13 17 17 C 1.38231 * 120.00135 * 245.66551 * 16 15 14 18 18 C 1.38238 * 119.99775 * 179.76158 * 17 16 15 19 19 C 1.38234 * 119.99911 * 0.51450 * 18 17 16 20 20 C 1.38233 * 120.00096 * 359.73523 * 19 18 17 21 21 C 1.38232 * 119.99645 * 65.93692 * 16 15 14 22 22 C 1.53788 * 113.61247 * 300.86549 * 15 14 13 23 23 C 1.53777 * 87.07974 * 270.88262 * 22 15 14 24 24 H 1.09010 * 113.61220 * 220.02152 * 23 22 15 25 25 O 1.42893 * 113.61799 * 89.20026 * 23 22 15 26 26 C 1.53781 * 87.08452 * 334.56621 * 23 22 15 27 27 C 1.38160 * 119.97623 * 65.24861 * 4 2 1 28 28 H 0.96705 * 114.00035 * 299.99963 * 1 2 3 29 29 H 1.09005 * 109.47151 * 240.00248 * 2 1 3 30 30 H 1.48497 * 109.99742 * 299.99737 * 3 2 1 31 31 H 1.48490 * 109.99799 * 61.32016 * 3 2 1 32 32 H 1.07997 * 119.94150 * 359.97438 * 5 4 2 33 33 H 1.08010 * 119.96935 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.03242 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47109 * 59.99891 * 10 9 8 36 36 H 1.08995 * 109.47077 * 299.99699 * 10 9 8 37 37 H 0.96998 * 120.00480 * 0.02562 * 13 11 10 38 38 H 1.08995 * 109.47444 * 294.70357 * 14 13 11 39 39 H 1.09000 * 109.46974 * 54.70552 * 14 13 11 40 40 H 1.08004 * 120.00481 * 0.02562 * 17 16 15 41 41 H 1.08002 * 120.00025 * 180.22675 * 18 17 16 42 42 H 1.08000 * 119.99906 * 179.72186 * 19 18 17 43 43 H 1.08000 * 120.00106 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.00416 * 0.02562 * 21 16 15 45 45 H 1.08996 * 113.61479 * 25.43357 * 22 15 14 46 46 H 1.08998 * 113.61514 * 156.33394 * 22 15 14 47 47 H 0.96701 * 114.00279 * 179.97438 * 25 23 22 48 48 H 1.09002 * 113.61698 * 270.88930 * 26 23 22 49 49 H 1.08999 * 113.61416 * 139.97686 * 26 23 22 50 50 H 1.07999 * 120.02973 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6387 -0.0117 2.1909 6 6 3.1015 -0.6609 3.3208 7 6 2.8576 -2.0095 3.4927 8 6 2.1469 -2.7128 2.5306 9 8 1.9050 -4.0396 2.6976 10 6 2.4114 -4.6466 3.8881 11 6 2.0486 -6.1092 3.8998 12 8 1.4180 -6.5849 2.9794 13 7 2.4240 -6.8883 4.9333 14 6 2.0660 -8.3089 4.9476 15 6 2.7194 -8.9875 6.1532 16 6 2.0802 -8.5986 7.4613 17 6 2.8003 -7.8769 8.3948 18 6 2.2123 -7.5158 9.5926 19 6 0.9077 -7.8857 9.8613 20 6 0.1894 -8.6118 8.9300 21 6 0.7757 -8.9683 7.7299 22 6 4.2537 -8.8830 6.1621 23 6 4.2689 -10.1894 5.3511 24 1 5.0576 -10.8799 5.6503 25 8 4.2159 -9.9865 3.9377 26 6 2.9023 -10.5048 5.9818 27 6 1.6891 -2.0606 1.3952 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4678 -1.2085 31 1 1.5879 2.4585 1.2242 32 1 2.8309 1.0427 2.0582 33 1 3.6543 -0.1128 4.0696 34 1 3.2196 -2.5161 4.3751 35 1 1.9753 -4.1575 4.7591 36 1 3.4958 -4.5407 3.9169 37 1 2.9273 -6.5077 5.6700 38 1 0.9829 -8.4100 5.0166 39 1 2.4172 -8.7813 4.0302 40 1 3.8209 -7.5913 8.1866 41 1 2.7737 -6.9488 10.3205 42 1 0.4498 -7.6075 10.7991 43 1 -0.8297 -8.9011 9.1401 44 1 0.2146 -9.5363 7.0026 45 1 4.6360 -8.0231 5.6122 46 1 4.6922 -8.9805 7.1553 47 1 4.2255 -10.8046 3.4222 48 1 2.9713 -11.0456 6.9257 49 1 2.1936 -10.9541 5.2861 50 1 1.1402 -2.6071 0.6425 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_4860298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:26:19 Heat of formation + Delta-G solvation = -61.041529 kcal Electronic energy + Delta-G solvation = -32836.366925 eV Core-core repulsion = 28375.720970 eV Total energy + Delta-G solvation = -4460.645955 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.97599 -41.43465 -40.38184 -39.29545 -38.97509 -37.36376 -36.42937 -35.09568 -32.51301 -31.98877 -31.77743 -31.67235 -30.06388 -27.89893 -26.94452 -26.69643 -24.67852 -23.69744 -23.22259 -22.62961 -22.29192 -21.57237 -19.97754 -19.37176 -18.62074 -18.54166 -17.81661 -17.68765 -17.49600 -17.32102 -17.01930 -16.57799 -16.44472 -16.21564 -15.85647 -15.75908 -15.68732 -15.33455 -15.21226 -14.89771 -14.68668 -14.42354 -14.22269 -14.15282 -14.09473 -13.97273 -13.69847 -13.39310 -13.19724 -13.06477 -13.00485 -12.70609 -12.62246 -12.22435 -12.13439 -12.01175 -11.88454 -11.61485 -11.60131 -11.26238 -11.04535 -10.73419 -10.66643 -10.15529 -9.95850 -9.82108 -9.61442 -9.30451 -4.90703 0.19311 0.37959 0.42465 0.49457 1.27040 1.40950 1.46761 1.61547 1.96545 2.55132 2.65168 2.83392 3.16260 3.34950 3.40228 3.45072 3.55726 3.65538 3.73824 3.75317 3.82473 3.95821 3.98183 4.02377 4.11361 4.13859 4.15453 4.23643 4.28447 4.35105 4.42989 4.51951 4.52877 4.62970 4.64648 4.69221 4.74730 4.83470 4.86249 4.97046 4.99372 5.08195 5.14517 5.17514 5.20959 5.23299 5.27639 5.35896 5.43636 5.59416 5.64752 5.67323 5.68353 6.10673 6.24422 6.41780 6.45859 6.86208 7.06907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.096 4.096 3 Si 0.788 3.212 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.069 4.069 7 C -0.202 4.202 8 C 0.112 3.888 9 O -0.323 6.323 10 C 0.041 3.959 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.701 5.701 14 C 0.149 3.851 15 C -0.045 4.045 16 C -0.072 4.072 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.122 4.122 23 C 0.077 3.923 24 H 0.087 0.913 25 O -0.568 6.568 26 C -0.149 4.149 27 C -0.150 4.150 28 H 0.386 0.614 29 H 0.118 0.882 30 H -0.305 1.305 31 H -0.274 1.274 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.415 0.585 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.131 0.869 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.396 0.604 48 H 0.103 0.897 49 H 0.074 0.926 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.991 0.313 8.819 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.204 4.204 3 Si 0.692 3.308 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.087 4.087 7 C -0.221 4.221 8 C 0.067 3.933 9 O -0.236 6.236 10 C -0.037 4.037 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.355 5.355 14 C 0.026 3.974 15 C -0.045 4.045 16 C -0.072 4.072 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.159 4.159 23 C 0.018 3.982 24 H 0.104 0.896 25 O -0.377 6.377 26 C -0.187 4.187 27 C -0.169 4.169 28 H 0.235 0.765 29 H 0.136 0.864 30 H -0.234 1.234 31 H -0.200 1.200 32 H 0.166 0.834 33 H 0.181 0.819 34 H 0.177 0.823 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.252 0.748 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.134 0.866 45 H 0.098 0.902 46 H 0.138 0.862 47 H 0.246 0.754 48 H 0.122 0.878 49 H 0.092 0.908 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.299 0.936 7.675 10.633 hybrid contribution -1.559 -1.069 0.502 1.956 sum 5.739 -0.133 8.177 9.991 Atomic orbital electron populations 1.86585 1.18675 1.80594 1.50089 1.25496 0.83464 1.13042 0.98360 0.93821 0.89952 0.70564 0.76478 1.20125 0.98154 0.92830 0.97000 1.21255 1.00573 1.00889 0.94810 1.21330 0.96808 0.93398 0.97180 1.21632 1.03483 0.96437 1.00500 1.19227 0.96349 0.82262 0.95414 1.86128 1.74607 1.20995 1.41919 1.22678 1.02550 0.89969 0.88510 1.20534 0.79087 0.88633 0.82030 1.90757 1.41098 1.75985 1.37449 1.45528 1.57349 1.09848 1.22764 1.21127 0.98238 0.79827 0.98228 1.20786 0.95802 0.97172 0.90759 1.19644 0.93955 0.98480 0.95138 1.21314 1.00792 0.98189 0.93457 1.21458 0.95219 0.99733 0.97620 1.21444 0.95376 0.98542 0.99872 1.21359 1.00531 0.98755 0.94232 1.21108 0.95338 1.00694 0.97395 1.23286 0.93277 0.98230 1.01123 1.22732 0.96218 0.98116 0.81124 0.89559 1.86461 1.96655 1.37456 1.17081 1.23687 0.98819 0.93697 1.02505 1.20315 1.04340 0.94665 0.97570 0.76455 0.86422 1.23374 1.20001 0.83353 0.81905 0.82334 0.86053 0.85610 0.74768 0.93241 0.90241 0.83643 0.84216 0.85113 0.85596 0.86551 0.90189 0.86163 0.75421 0.87832 0.90775 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.50 12.84 -148.98 -1.91 -5.41 16 2 C -0.10 -0.24 2.80 71.24 0.20 -0.04 16 3 Si 0.79 -1.17 29.88 68.60 2.05 0.88 16 4 C -0.08 -0.26 5.35 -19.88 -0.11 -0.36 16 5 C -0.16 0.21 8.67 22.28 0.19 0.40 16 6 C -0.07 0.23 10.04 22.25 0.22 0.46 16 7 C -0.20 0.25 9.04 22.37 0.20 0.46 16 8 C 0.11 0.68 6.69 22.51 0.15 0.83 16 9 O -0.32 -3.06 9.67 -73.41 -0.71 -3.77 16 10 C 0.04 0.01 5.22 71.24 0.37 0.38 16 11 C 0.51 3.50 7.91 87.66 0.69 4.20 16 12 O -0.57 -10.75 16.49 15.99 0.26 -10.49 16 13 N -0.70 -0.20 5.05 -463.07 -2.34 -2.54 16 14 C 0.15 0.37 4.86 86.38 0.42 0.79 16 15 C -0.04 0.14 0.64 -52.40 -0.03 0.11 16 16 C -0.07 0.16 4.82 -19.87 -0.10 0.07 16 17 C -0.12 0.55 9.05 22.27 0.20 0.75 16 18 C -0.12 0.42 10.05 22.27 0.22 0.64 16 19 C -0.13 0.17 10.05 22.27 0.22 0.39 16 20 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 21 C -0.13 -0.07 9.24 22.27 0.21 0.14 16 22 C -0.12 0.73 5.90 31.12 0.18 0.92 16 23 C 0.08 -0.36 5.27 31.12 0.16 -0.20 16 24 H 0.09 -0.64 8.14 -2.38 -0.02 -0.66 16 25 O -0.57 0.54 11.57 -148.98 -1.72 -1.19 16 26 C -0.15 0.63 6.93 31.12 0.22 0.84 16 27 C -0.15 -1.20 9.63 22.36 0.22 -0.98 16 28 H 0.39 0.02 8.70 -74.05 -0.64 -0.62 16 29 H 0.12 0.24 7.96 -2.38 -0.02 0.22 16 30 H -0.31 -1.99 7.11 99.48 0.71 -1.28 16 31 H -0.27 -0.22 7.01 99.48 0.70 0.48 16 32 H 0.15 -0.85 4.84 -2.91 -0.01 -0.86 16 33 H 0.16 -1.60 8.06 -2.91 -0.02 -1.62 16 34 H 0.16 -1.26 6.30 -2.91 -0.02 -1.28 16 35 H 0.12 -0.72 7.66 -2.39 -0.02 -0.74 16 36 H 0.13 -0.83 7.66 -2.39 -0.02 -0.84 16 37 H 0.42 -2.62 8.04 -92.71 -0.75 -3.37 16 38 H 0.05 0.30 7.82 -2.39 -0.02 0.28 16 39 H 0.08 0.54 6.03 -2.39 -0.01 0.53 16 40 H 0.15 -1.38 6.40 -2.91 -0.02 -1.40 16 41 H 0.14 -1.02 8.06 -2.91 -0.02 -1.04 16 42 H 0.13 -0.52 8.06 -2.91 -0.02 -0.54 16 43 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 44 H 0.12 0.04 8.06 -2.91 -0.02 0.02 16 45 H 0.08 -0.41 7.49 -2.39 -0.02 -0.43 16 46 H 0.12 -1.14 6.78 -2.39 -0.02 -1.16 16 47 H 0.40 -3.05 9.12 -74.06 -0.68 -3.72 16 48 H 0.10 -0.56 8.10 -2.39 -0.02 -0.58 16 49 H 0.07 -0.21 8.10 -2.39 -0.02 -0.23 16 50 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 Total: 0.00 -29.02 409.28 -1.33 -30.35 By element: Atomic # 1 Polarization: -16.78 SS G_CDS: -1.03 Total: -17.82 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.08 Total: 9.98 kcal Atomic # 7 Polarization: -0.20 SS G_CDS: -2.34 Total: -2.54 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -4.08 Total: -20.85 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.05 Total: 0.88 kcal Total: -29.02 -1.33 -30.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_4860298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.693 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds