Wall clock time and date at job start Sat Mar 6 2021 23:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35998 * 116.99679 * 2 1 4 4 C 1.39163 * 120.07052 * 180.02562 * 3 2 1 5 5 O 1.35997 * 120.07032 * 359.97438 * 4 3 2 6 6 C 1.42901 * 116.99446 * 179.72665 * 5 4 3 7 7 C 1.50711 * 109.46903 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99411 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99910 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99727 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47266 * 184.77508 * 10 9 7 12 12 C 1.50701 * 112.85059 * 294.75968 * 11 10 9 13 13 C 1.38234 * 119.99748 * 103.14386 * 12 11 10 14 14 C 1.38240 * 119.99736 * 180.25873 * 13 12 11 15 15 C 1.38231 * 120.00017 * 359.53167 * 14 13 12 16 16 C 1.38242 * 119.99885 * 0.42140 * 15 14 13 17 17 C 1.38230 * 119.99842 * 359.81637 * 16 15 14 18 18 C 1.53784 * 113.61714 * 163.55854 * 11 10 9 19 19 C 1.53773 * 87.08368 * 270.80277 * 18 11 10 20 20 H 1.09005 * 113.61482 * 220.01801 * 19 18 11 21 21 O 1.42907 * 113.61568 * 89.20077 * 19 18 11 22 22 C 1.53781 * 113.68793 * 66.02606 * 11 10 9 23 23 C 1.38560 * 119.85134 * 179.72669 * 4 3 2 24 24 C 1.38238 * 120.00438 * 0.27704 * 23 4 3 25 25 C 1.38253 * 120.14519 * 359.97438 * 24 23 4 26 26 C 1.50694 * 119.93052 * 180.02562 * 25 24 23 27 27 O 1.42898 * 109.47415 * 245.00422 * 26 25 24 28 28 Si 1.86306 * 109.47109 * 4.99837 * 26 25 24 29 29 C 1.38244 * 120.14600 * 359.97438 * 25 24 23 30 30 H 1.09004 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46997 * 299.99614 * 1 2 3 32 32 H 1.08996 * 109.47301 * 59.99636 * 1 2 3 33 33 H 1.08998 * 109.47351 * 60.00491 * 6 5 4 34 34 H 1.09000 * 109.47274 * 299.99514 * 6 5 4 35 35 H 0.96998 * 119.99675 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47609 * 64.77635 * 10 9 7 37 37 H 1.09002 * 109.47272 * 304.77421 * 10 9 7 38 38 H 1.08002 * 120.00302 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.99750 * 179.72746 * 14 13 12 40 40 H 1.08000 * 120.00044 * 180.21456 * 15 14 13 41 41 H 1.07994 * 119.99667 * 179.78877 * 16 15 14 42 42 H 1.08004 * 120.00137 * 179.97438 * 17 16 15 43 43 H 1.09000 * 113.60793 * 25.35477 * 18 11 10 44 44 H 1.08996 * 113.61206 * 156.16484 * 18 11 10 45 45 H 0.96696 * 113.99984 * 179.97438 * 21 19 18 46 46 H 1.09001 * 113.61751 * 203.67426 * 22 11 10 47 47 H 1.08999 * 113.61968 * 334.57902 * 22 11 10 48 48 H 1.08003 * 119.99574 * 180.25271 * 23 4 3 49 49 H 1.07995 * 119.93024 * 179.97438 * 24 23 4 50 50 H 1.09001 * 109.47369 * 124.99759 * 26 25 24 51 51 H 0.96693 * 114.00661 * 59.99316 * 27 26 25 52 52 H 1.48497 * 110.00432 * 180.02562 * 28 26 25 53 53 H 1.48498 * 109.99817 * 301.32408 * 28 26 25 54 54 H 1.07997 * 120.00235 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1477 -0.0005 6 6 5.6003 0.3008 -0.0072 7 6 6.2519 -1.0582 -0.0068 8 8 5.5669 -2.0591 -0.0018 9 7 7.5957 -1.1611 -0.0130 10 6 8.2291 -2.4821 -0.0132 11 6 9.7463 -2.3202 0.0993 12 6 10.3525 -1.6376 -1.0997 13 6 10.7287 -0.3097 -1.0222 14 6 11.2798 0.3179 -2.1237 15 6 11.4637 -0.3850 -3.2997 16 6 11.0883 -1.7132 -3.3769 17 6 10.5327 -2.3395 -2.2769 18 6 10.4751 -3.6116 0.5069 19 6 10.2687 -3.1742 1.9666 20 1 11.1290 -3.3699 2.6068 21 8 9.0395 -3.6327 2.5333 22 6 10.2067 -1.7298 1.4425 23 6 4.0602 2.5234 -0.0063 24 6 3.3029 3.6799 -0.0056 25 6 1.9224 3.6058 0.0002 26 6 1.1016 4.8696 0.0002 27 8 0.3696 4.9622 1.2240 28 14 2.2302 6.3431 -0.1612 29 6 1.2932 2.3748 0.0048 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 5.9104 0.8530 0.8799 34 1 5.9026 0.8480 -0.9001 35 1 8.1434 -0.3606 -0.0181 36 1 7.9868 -3.0011 -0.9406 37 1 7.8617 -3.0613 0.8340 38 1 10.5878 0.2387 -0.1025 39 1 11.5697 1.3566 -2.0645 40 1 11.8974 0.1044 -4.1592 41 1 11.2288 -2.2614 -4.2967 42 1 10.2390 -3.3770 -2.3373 43 1 9.9340 -4.5202 0.2426 44 1 11.5210 -3.6378 0.2011 45 1 8.9043 -3.3610 3.4514 46 1 11.1797 -1.2409 1.3940 47 1 9.4492 -1.1192 1.9337 48 1 5.1385 2.5840 -0.0108 49 1 3.7907 4.6434 -0.0097 50 1 0.4059 4.8511 -0.8387 51 1 0.9260 4.9833 2.0145 52 1 1.4329 7.5959 -0.1618 53 1 3.2042 6.3619 0.9595 54 1 0.2146 2.3197 0.0098 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_60476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:26:36 Heat of formation + Delta-G solvation = -95.133356 kcal Electronic energy + Delta-G solvation = -37655.059965 eV Core-core repulsion = 32718.715867 eV Total energy + Delta-G solvation = -4936.344099 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.98003 -41.71095 -40.58301 -39.34887 -39.19926 -38.91776 -37.03694 -36.41071 -35.09466 -32.12920 -31.84112 -31.72708 -31.48434 -30.27638 -28.52584 -27.83644 -26.91103 -26.16980 -24.65625 -23.52195 -23.16033 -22.56947 -22.32912 -21.64066 -20.01551 -19.80084 -18.64722 -18.54119 -18.35787 -17.97828 -17.68944 -17.55217 -17.19663 -16.89044 -16.71847 -16.30754 -16.13318 -15.97516 -15.81078 -15.72654 -15.67618 -15.57643 -15.19509 -15.10805 -14.65986 -14.46790 -14.31997 -14.21944 -14.04843 -13.78031 -13.64284 -13.52050 -13.43435 -13.14005 -13.03620 -12.71227 -12.63665 -12.58750 -12.18635 -12.17759 -12.13868 -12.00568 -11.88610 -11.68301 -11.62125 -11.15090 -11.04037 -10.68946 -10.60832 -10.15895 -9.79473 -9.79096 -9.59760 -8.92953 -4.87819 0.16118 0.27335 0.45167 0.52170 1.33608 1.44898 1.46561 1.63503 1.99729 2.30585 2.54520 2.54875 2.86362 3.14945 3.39869 3.41281 3.45939 3.60059 3.65840 3.68852 3.77298 3.84722 3.88229 4.02262 4.02731 4.07501 4.13511 4.16661 4.18944 4.27564 4.30210 4.31561 4.35324 4.43560 4.54873 4.57090 4.64049 4.65570 4.66381 4.73064 4.76504 4.84473 4.88543 5.00315 5.00592 5.11330 5.12004 5.16747 5.19068 5.22167 5.30414 5.36419 5.58922 5.62150 5.67609 5.69798 5.95729 6.13552 6.38552 6.49856 6.52996 6.87533 7.11429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.085 3.915 5 O -0.314 6.314 6 C 0.037 3.963 7 C 0.510 3.490 8 O -0.573 6.573 9 N -0.701 5.701 10 C 0.149 3.851 11 C -0.044 4.044 12 C -0.073 4.073 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.134 4.134 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.120 4.120 19 C 0.076 3.924 20 H 0.086 0.914 21 O -0.569 6.569 22 C -0.148 4.148 23 C -0.160 4.160 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.085 4.085 27 O -0.550 6.550 28 Si 0.776 3.224 29 C -0.151 4.151 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.415 0.585 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.396 0.604 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.174 0.826 49 H 0.158 0.842 50 H 0.122 0.878 51 H 0.386 0.614 52 H -0.307 1.307 53 H -0.272 1.272 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 6.552 0.093 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.227 6.227 6 C -0.041 4.041 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.044 4.044 12 C -0.073 4.073 13 C -0.136 4.136 14 C -0.139 4.139 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.158 4.158 19 C 0.017 3.983 20 H 0.104 0.896 21 O -0.378 6.378 22 C -0.186 4.186 23 C -0.178 4.178 24 C -0.128 4.128 25 C -0.116 4.116 26 C -0.193 4.193 27 O -0.359 6.359 28 Si 0.681 3.319 29 C -0.170 4.170 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.253 0.747 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.246 0.754 46 H 0.130 0.870 47 H 0.103 0.897 48 H 0.192 0.808 49 H 0.175 0.825 50 H 0.139 0.861 51 H 0.236 0.764 52 H -0.236 1.236 53 H -0.199 1.199 54 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.382 5.877 -0.531 9.451 hybrid contribution -0.472 -0.191 1.363 1.455 sum 6.910 5.686 0.832 8.987 Atomic orbital electron populations 1.23284 0.76812 1.05183 1.02124 1.86196 1.23008 1.26654 1.89084 1.18682 0.89887 0.85652 1.02691 1.18615 0.88228 0.86521 1.02714 1.86230 1.18096 1.29138 1.89280 1.22736 0.79442 0.94977 1.06905 1.20571 0.82823 0.90954 0.75988 1.90777 1.64048 1.40253 1.50094 1.45520 1.05076 1.10202 1.74721 1.21093 0.90339 0.84215 1.01798 1.20771 0.92391 0.97926 0.93316 1.19648 0.99130 0.94512 0.94027 1.21260 0.99120 0.93714 0.99539 1.21457 0.98685 1.00890 0.92864 1.21453 1.00130 0.94599 0.99010 1.21362 0.98962 0.95696 0.98810 1.21125 0.99928 1.00255 0.93282 1.23168 1.01596 0.96513 0.94546 1.22727 0.87074 0.94027 0.94473 0.89618 1.86457 1.39525 1.78453 1.33360 1.23745 1.03355 0.97507 0.93988 1.21364 1.02211 0.89342 1.04899 1.21039 0.92455 0.99043 1.00266 1.20117 0.94406 0.94711 1.02336 1.25317 1.02303 1.02223 0.89491 1.86569 1.37413 1.95571 1.16304 0.93959 0.77293 0.72349 0.88292 1.21021 1.00510 0.90505 1.04932 0.87165 0.91905 0.91532 0.85464 0.85652 0.74749 0.93607 0.90168 0.83719 0.84067 0.85066 0.85592 0.86548 0.91457 0.87034 0.75408 0.87007 0.89741 0.80832 0.82462 0.86067 0.76446 1.23561 1.19853 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.34 -4.02 10.28 -79.66 -0.82 -4.84 16 3 C 0.08 0.67 6.70 22.57 0.15 0.82 16 4 C 0.08 0.54 6.70 22.57 0.15 0.69 16 5 O -0.31 -3.14 9.45 -67.10 -0.63 -3.78 16 6 C 0.04 -0.02 5.22 71.24 0.37 0.36 16 7 C 0.51 3.30 7.91 87.66 0.69 3.99 16 8 O -0.57 -10.97 16.50 15.99 0.26 -10.70 16 9 N -0.70 0.28 5.20 -463.06 -2.41 -2.12 16 10 C 0.15 0.43 4.89 86.38 0.42 0.86 16 11 C -0.04 0.13 0.62 -52.40 -0.03 0.10 16 12 C -0.07 0.18 4.52 -19.87 -0.09 0.09 16 13 C -0.12 0.64 8.53 22.27 0.19 0.83 16 14 C -0.12 0.53 10.05 22.27 0.22 0.75 16 15 C -0.13 0.26 10.05 22.27 0.22 0.48 16 16 C -0.13 0.01 10.05 22.27 0.22 0.24 16 17 C -0.13 -0.04 9.39 22.27 0.21 0.17 16 18 C -0.12 0.28 6.72 31.12 0.21 0.49 16 19 C 0.08 -0.32 5.27 31.12 0.16 -0.15 16 20 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 21 O -0.57 0.18 11.52 -148.98 -1.72 -1.53 16 22 C -0.15 1.05 5.94 31.12 0.18 1.23 16 23 C -0.16 0.30 9.04 22.35 0.20 0.51 16 24 C -0.11 0.32 8.66 22.27 0.19 0.51 16 25 C -0.11 -0.03 5.35 -19.86 -0.11 -0.14 16 26 C -0.09 0.11 2.80 71.23 0.20 0.31 16 27 O -0.55 -1.20 12.83 -148.98 -1.91 -3.11 16 28 Si 0.78 -3.12 29.88 68.60 2.05 -1.07 16 29 C -0.15 -0.63 8.67 22.35 0.19 -0.43 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.06 0.07 7.65 -2.38 -0.02 0.05 16 32 H 0.07 0.03 7.67 -2.39 -0.02 0.01 16 33 H 0.13 -1.02 7.66 -2.39 -0.02 -1.04 16 34 H 0.13 -0.92 7.66 -2.39 -0.02 -0.94 16 35 H 0.42 -3.05 7.77 -92.71 -0.72 -3.77 16 36 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.08 0.62 5.95 -2.39 -0.01 0.60 16 38 H 0.15 -1.53 7.01 -2.91 -0.02 -1.55 16 39 H 0.14 -1.19 8.06 -2.91 -0.02 -1.22 16 40 H 0.13 -0.61 8.06 -2.91 -0.02 -0.63 16 41 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 42 H 0.12 0.03 8.03 -2.91 -0.02 0.01 16 43 H 0.07 0.07 8.10 -2.39 -0.02 0.06 16 44 H 0.11 -0.49 8.09 -2.39 -0.02 -0.51 16 45 H 0.40 -3.02 9.12 -74.06 -0.68 -3.69 16 46 H 0.11 -1.08 7.43 -2.39 -0.02 -1.10 16 47 H 0.08 -0.66 7.95 -2.39 -0.02 -0.68 16 48 H 0.17 -1.73 6.30 -2.91 -0.02 -1.75 16 49 H 0.16 -1.31 4.83 -2.91 -0.01 -1.33 16 50 H 0.12 -0.28 7.96 -2.39 -0.02 -0.30 16 51 H 0.39 -1.36 8.70 -74.06 -0.64 -2.00 16 52 H -0.31 -1.35 7.11 99.48 0.71 -0.64 16 53 H -0.27 0.49 7.00 99.48 0.70 1.18 16 54 H 0.14 0.37 6.30 -2.91 -0.02 0.35 16 Total: 0.00 -32.56 439.46 -1.13 -33.68 By element: Atomic # 1 Polarization: -18.34 SS G_CDS: -1.04 Total: -19.39 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.09 Total: 12.87 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -2.41 Total: -2.12 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -4.82 Total: -23.97 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: 2.05 Total: -1.07 kcal Total: -32.56 -1.13 -33.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_60476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.450 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds