Wall clock time and date at job start Sat Mar 6 2021 23:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86293 * 109.47357 * 2 1 4 4 C 1.50697 * 109.47272 * 239.99798 * 2 1 3 5 5 C 1.35448 * 125.56770 * 119.97856 * 4 2 1 6 6 C 1.39830 * 107.86750 * 179.76391 * 5 4 2 7 7 C 1.37874 * 107.08681 * 0.41490 * 6 5 4 8 8 C 1.46670 * 126.23458 * 179.85057 * 7 6 5 9 9 O 1.21694 * 120.00372 * 359.68924 * 8 7 6 10 10 N 1.34780 * 119.99842 * 179.69431 * 8 7 6 11 11 C 1.46506 * 119.99681 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46831 * 182.96532 * 11 10 8 13 13 C 1.50702 * 112.90750 * 288.02922 * 12 11 10 14 14 C 1.38238 * 120.00008 * 124.25883 * 13 12 11 15 15 C 1.38238 * 119.99803 * 179.74823 * 14 13 12 16 16 C 1.38235 * 119.99896 * 0.54453 * 15 14 13 17 17 C 1.38233 * 120.00095 * 359.71091 * 16 15 14 18 18 C 1.38234 * 120.00036 * 304.53140 * 13 12 11 19 19 C 1.53953 * 113.61625 * 156.70599 * 12 11 10 20 20 C 1.53777 * 87.11175 * 270.84109 * 19 12 11 21 21 H 1.09007 * 113.69490 * 220.07580 * 20 19 12 22 22 O 1.42898 * 113.61701 * 89.18246 * 20 19 12 23 23 C 1.53778 * 87.08190 * 334.63664 * 20 19 12 24 24 N 1.35538 * 125.56327 * 300.00177 * 4 2 1 25 25 H 0.96710 * 113.99416 * 60.00070 * 1 2 3 26 26 H 1.09001 * 109.46400 * 120.00059 * 2 1 3 27 27 H 1.48504 * 109.99986 * 59.99547 * 3 2 1 28 28 H 1.48504 * 110.00081 * 181.31337 * 3 2 1 29 29 H 1.08004 * 126.06427 * 0.02562 * 5 4 2 30 30 H 1.08003 * 126.46123 * 180.26834 * 6 5 4 31 31 H 0.96990 * 120.00153 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47321 * 62.96373 * 11 10 8 33 33 H 1.09004 * 109.46748 * 302.95734 * 11 10 8 34 34 H 1.08004 * 119.99782 * 0.02562 * 14 13 12 35 35 H 1.08005 * 119.99728 * 180.27452 * 15 14 13 36 36 H 1.07999 * 120.00167 * 179.72606 * 16 15 14 37 37 H 1.08003 * 120.00305 * 180.02562 * 17 16 15 38 38 H 1.08005 * 120.00136 * 0.02562 * 18 13 12 39 39 H 1.08998 * 113.54182 * 156.28965 * 19 12 11 40 40 H 1.09004 * 113.74566 * 25.41863 * 19 12 11 41 41 H 0.96705 * 113.99562 * 82.50739 * 22 20 19 42 42 H 1.08993 * 113.61711 * 139.98388 * 23 20 19 43 43 H 1.09005 * 113.61421 * 270.80187 * 23 20 19 44 44 H 0.97006 * 125.68044 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7131 -0.1636 -2.1919 6 6 2.9614 -1.1475 -3.1540 7 6 2.3018 -2.2877 -2.7469 8 6 2.2783 -3.5740 -3.4514 9 8 2.8765 -3.7027 -4.5033 10 7 1.5941 -4.6134 -2.9337 11 6 1.5711 -5.8983 -3.6372 12 6 0.6708 -6.8775 -2.8812 13 6 1.2803 -7.3568 -1.5890 14 6 0.5935 -7.1977 -0.3999 15 6 1.1504 -7.6421 0.7847 16 6 2.3989 -8.2355 0.7817 17 6 3.0880 -8.3899 -0.4067 18 6 2.5286 -7.9506 -1.5920 19 6 0.1176 -8.0125 -3.7620 20 6 -1.0678 -7.0851 -4.0772 21 1 -2.0293 -7.5979 -4.1073 22 8 -0.8513 -6.2451 -5.2127 23 6 -0.7811 -6.3921 -2.7347 24 7 1.6744 -2.0008 -1.5557 25 1 -0.3933 0.4418 -0.7652 26 1 1.7923 -0.5139 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5347 1.7702 -0.0320 29 1 3.0828 0.8510 -2.2100 30 1 3.5556 -1.0348 -4.0488 31 1 1.1176 -4.5110 -2.0952 32 1 2.5824 -6.3016 -3.6905 33 1 1.1840 -5.7534 -4.6458 34 1 -0.3800 -6.7301 -0.3970 35 1 0.6119 -7.5217 1.7132 36 1 2.8359 -8.5788 1.7077 37 1 4.0632 -8.8539 -0.4091 38 1 3.0673 -8.0707 -2.5204 39 1 -0.1624 -8.9031 -3.1994 40 1 0.7385 -8.2375 -4.6292 41 1 -1.0302 -6.6754 -6.0601 42 1 -0.8848 -5.3077 -2.7721 43 1 -1.3078 -6.8388 -1.8914 44 1 1.1371 -2.6191 -1.0361 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13154426_6580494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:26:52 Heat of formation + Delta-G solvation = -10.557398 kcal Electronic energy + Delta-G solvation = -28302.695733 eV Core-core repulsion = 24381.258975 eV Total energy + Delta-G solvation = -3921.436758 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.48279 -41.89090 -39.86118 -39.36585 -37.75350 -36.45959 -35.01738 -32.26253 -32.00129 -31.81012 -31.38511 -28.85221 -27.18352 -26.49671 -24.82713 -23.39287 -22.94905 -22.39371 -21.47199 -21.06316 -20.26300 -19.51124 -18.78568 -18.11992 -17.82289 -16.91295 -16.72241 -16.52824 -16.33298 -15.98190 -15.83820 -15.64794 -15.39020 -15.10711 -14.90915 -14.64398 -14.57769 -14.32191 -14.19796 -14.06108 -13.93779 -13.67798 -13.46954 -13.30324 -13.14113 -12.79459 -12.35532 -12.21664 -12.04319 -12.03111 -11.68957 -11.42438 -11.08399 -10.83510 -10.71890 -10.04331 -10.00812 -9.91727 -9.70323 -9.18087 -5.04239 0.32791 0.39705 0.45372 1.13874 1.58217 1.68040 1.86452 2.09025 2.20169 2.50012 2.73331 2.93407 3.23660 3.29792 3.39260 3.57012 3.57454 3.64444 3.75053 3.95943 3.99346 4.02482 4.13738 4.24647 4.26440 4.32644 4.45193 4.46467 4.52372 4.55403 4.59660 4.66418 4.80647 4.91392 4.92113 5.02619 5.04686 5.06160 5.11307 5.15602 5.37370 5.48895 5.54686 5.57865 5.66051 5.89248 5.98989 6.26791 6.38490 6.52379 6.57563 7.23809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.055 4.055 3 Si 0.722 3.278 4 C 0.019 3.981 5 C -0.200 4.200 6 C -0.099 4.099 7 C -0.048 4.048 8 C 0.590 3.410 9 O -0.525 6.525 10 N -0.724 5.724 11 C 0.146 3.854 12 C -0.052 4.052 13 C -0.070 4.070 14 C -0.123 4.123 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.150 4.150 20 C 0.081 3.919 21 H 0.073 0.927 22 O -0.546 6.546 23 C -0.130 4.130 24 N -0.523 5.523 25 H 0.383 0.617 26 H 0.114 0.886 27 H -0.254 1.254 28 H -0.253 1.253 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.392 0.608 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.383 0.617 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 -1.074 1.277 4.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.165 4.165 3 Si 0.622 3.378 4 C -0.099 4.099 5 C -0.224 4.224 6 C -0.126 4.126 7 C -0.162 4.162 8 C 0.377 3.623 9 O -0.401 6.401 10 N -0.375 5.375 11 C 0.023 3.977 12 C -0.052 4.052 13 C -0.070 4.070 14 C -0.141 4.141 15 C -0.135 4.135 16 C -0.140 4.140 17 C -0.133 4.133 18 C -0.129 4.129 19 C -0.188 4.188 20 C 0.022 3.978 21 H 0.091 0.909 22 O -0.352 6.352 23 C -0.167 4.167 24 N -0.119 5.119 25 H 0.231 0.769 26 H 0.132 0.868 27 H -0.179 1.179 28 H -0.177 1.177 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.226 0.774 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.565 -0.622 1.995 3.309 hybrid contribution -0.494 -1.559 0.565 1.731 sum -3.059 -2.182 2.561 4.547 Atomic orbital electron populations 1.86495 1.17056 1.81780 1.49635 1.24969 0.85179 1.11059 0.95339 0.93985 0.81080 0.75998 0.86775 1.21124 1.03974 0.85152 0.99606 1.20698 1.05185 1.00546 0.96002 1.21318 1.00419 0.90600 1.00247 1.20497 1.07749 0.96793 0.91132 1.16998 0.78953 0.81872 0.84448 1.90867 1.44241 1.82937 1.22034 1.45731 1.53467 1.11917 1.26349 1.21245 0.98912 0.81051 0.96486 1.20951 0.94302 0.96745 0.93239 1.19589 0.94732 0.98899 0.93798 1.21109 1.00103 1.00905 0.91999 1.21181 0.95777 0.98460 0.98079 1.21217 0.95187 0.99370 0.98239 1.21199 0.99990 0.99553 0.92573 1.21002 0.95025 0.98500 0.98339 1.23702 0.98309 0.96874 0.99888 1.22621 0.96606 0.91546 0.87077 0.90932 1.86500 1.91176 1.41212 1.16319 1.23265 0.94833 1.02121 0.96472 1.41940 1.40165 1.11068 1.18742 0.76880 0.86829 1.17856 1.17695 0.83191 0.82975 0.77431 0.91336 0.88436 0.85814 0.85975 0.86036 0.85938 0.86099 0.88578 0.90026 0.76829 0.90106 0.87917 0.74725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.57 12.88 -35.23 -0.45 0.12 16 2 C -0.06 0.07 3.08 36.00 0.11 0.18 16 3 Si 0.72 -1.37 30.54 -169.99 -5.19 -6.56 16 4 C 0.02 0.00 6.47 -81.95 -0.53 -0.53 16 5 C -0.20 -0.12 9.32 -39.98 -0.37 -0.49 16 6 C -0.10 -0.25 10.65 -39.12 -0.42 -0.67 16 7 C -0.05 -0.12 7.06 -81.98 -0.58 -0.70 16 8 C 0.59 2.32 7.79 -12.86 -0.10 2.22 16 9 O -0.53 -4.00 16.88 5.19 0.09 -3.91 16 10 N -0.72 -0.79 5.09 -61.62 -0.31 -1.10 16 11 C 0.15 0.15 4.82 -4.04 -0.02 0.13 16 12 C -0.05 0.06 0.69 -154.76 -0.11 -0.05 16 13 C -0.07 0.02 4.92 -104.62 -0.51 -0.49 16 14 C -0.12 0.09 9.14 -39.58 -0.36 -0.27 16 15 C -0.12 0.04 10.05 -39.58 -0.40 -0.36 16 16 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 17 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 18 C -0.11 -0.05 9.22 -39.58 -0.36 -0.42 16 19 C -0.15 0.28 7.04 -25.83 -0.18 0.10 16 20 C 0.08 -0.15 5.28 -25.92 -0.14 -0.28 16 21 H 0.07 -0.21 8.14 -51.92 -0.42 -0.63 16 22 O -0.55 0.31 11.58 -35.23 -0.41 -0.10 16 23 C -0.13 0.23 6.09 -25.92 -0.16 0.07 16 24 N -0.52 -0.07 5.99 -5.70 -0.03 -0.11 16 25 H 0.38 -1.71 8.70 45.56 0.40 -1.31 16 26 H 0.11 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 28 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 29 H 0.15 -0.23 6.17 -52.48 -0.32 -0.55 16 30 H 0.15 0.34 8.06 -52.48 -0.42 -0.08 16 31 H 0.39 -0.34 7.10 -40.82 -0.29 -0.63 16 32 H 0.07 0.14 7.13 -51.93 -0.37 -0.23 16 33 H 0.10 0.25 6.04 -51.93 -0.31 -0.07 16 34 H 0.12 -0.30 5.96 -52.48 -0.31 -0.62 16 35 H 0.12 -0.22 8.06 -52.48 -0.42 -0.65 16 36 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 37 H 0.12 -0.10 8.06 -52.48 -0.42 -0.53 16 38 H 0.12 -0.02 7.46 -52.48 -0.39 -0.41 16 39 H 0.10 -0.20 8.09 -51.93 -0.42 -0.62 16 40 H 0.08 -0.15 8.11 -51.93 -0.42 -0.57 16 41 H 0.38 -1.60 9.12 45.56 0.42 -1.19 16 42 H 0.08 -0.08 7.45 -51.93 -0.39 -0.46 16 43 H 0.10 -0.31 6.24 -51.93 -0.32 -0.63 16 44 H 0.42 -0.76 8.19 -40.82 -0.33 -1.09 16 LS Contribution 362.97 15.07 5.47 5.47 Total: 0.00 -9.07 362.97 -10.57 -19.64 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: -4.80 Total: -11.02 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -4.92 Total: -2.42 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -0.35 Total: -1.21 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -0.77 Total: -3.89 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.19 Total: -6.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.07 -10.57 -19.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_6580494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.079 kcal (2) G-P(sol) polarization free energy of solvation -9.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds