Wall clock time and date at job start Sat Mar 6 2021 23:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86293 * 109.47357 * 2 1 4 4 C 1.50697 * 109.47272 * 239.99798 * 2 1 3 5 5 C 1.35448 * 125.56770 * 119.97856 * 4 2 1 6 6 C 1.39830 * 107.86750 * 179.76391 * 5 4 2 7 7 C 1.37874 * 107.08681 * 0.41490 * 6 5 4 8 8 C 1.46670 * 126.23458 * 179.85057 * 7 6 5 9 9 O 1.21694 * 120.00372 * 359.68924 * 8 7 6 10 10 N 1.34780 * 119.99842 * 179.69431 * 8 7 6 11 11 C 1.46506 * 119.99681 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46831 * 182.96532 * 11 10 8 13 13 C 1.50702 * 112.90750 * 288.02922 * 12 11 10 14 14 C 1.38238 * 120.00008 * 124.25883 * 13 12 11 15 15 C 1.38238 * 119.99803 * 179.74823 * 14 13 12 16 16 C 1.38235 * 119.99896 * 0.54453 * 15 14 13 17 17 C 1.38233 * 120.00095 * 359.71091 * 16 15 14 18 18 C 1.38234 * 120.00036 * 304.53140 * 13 12 11 19 19 C 1.53953 * 113.61625 * 156.70599 * 12 11 10 20 20 C 1.53777 * 87.11175 * 270.84109 * 19 12 11 21 21 H 1.09007 * 113.69490 * 220.07580 * 20 19 12 22 22 O 1.42898 * 113.61701 * 89.18246 * 20 19 12 23 23 C 1.53778 * 87.08190 * 334.63664 * 20 19 12 24 24 N 1.35538 * 125.56327 * 300.00177 * 4 2 1 25 25 H 0.96710 * 113.99416 * 60.00070 * 1 2 3 26 26 H 1.09001 * 109.46400 * 120.00059 * 2 1 3 27 27 H 1.48504 * 109.99986 * 59.99547 * 3 2 1 28 28 H 1.48504 * 110.00081 * 181.31337 * 3 2 1 29 29 H 1.08004 * 126.06427 * 0.02562 * 5 4 2 30 30 H 1.08003 * 126.46123 * 180.26834 * 6 5 4 31 31 H 0.96990 * 120.00153 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47321 * 62.96373 * 11 10 8 33 33 H 1.09004 * 109.46748 * 302.95734 * 11 10 8 34 34 H 1.08004 * 119.99782 * 0.02562 * 14 13 12 35 35 H 1.08005 * 119.99728 * 180.27452 * 15 14 13 36 36 H 1.07999 * 120.00167 * 179.72606 * 16 15 14 37 37 H 1.08003 * 120.00305 * 180.02562 * 17 16 15 38 38 H 1.08005 * 120.00136 * 0.02562 * 18 13 12 39 39 H 1.08998 * 113.54182 * 156.28965 * 19 12 11 40 40 H 1.09004 * 113.74566 * 25.41863 * 19 12 11 41 41 H 0.96705 * 113.99562 * 82.50739 * 22 20 19 42 42 H 1.08993 * 113.61711 * 139.98388 * 23 20 19 43 43 H 1.09005 * 113.61421 * 270.80187 * 23 20 19 44 44 H 0.97006 * 125.68044 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7131 -0.1636 -2.1919 6 6 2.9614 -1.1475 -3.1540 7 6 2.3018 -2.2877 -2.7469 8 6 2.2783 -3.5740 -3.4514 9 8 2.8765 -3.7027 -4.5033 10 7 1.5941 -4.6134 -2.9337 11 6 1.5711 -5.8983 -3.6372 12 6 0.6708 -6.8775 -2.8812 13 6 1.2803 -7.3568 -1.5890 14 6 0.5935 -7.1977 -0.3999 15 6 1.1504 -7.6421 0.7847 16 6 2.3989 -8.2355 0.7817 17 6 3.0880 -8.3899 -0.4067 18 6 2.5286 -7.9506 -1.5920 19 6 0.1176 -8.0125 -3.7620 20 6 -1.0678 -7.0851 -4.0772 21 1 -2.0293 -7.5979 -4.1073 22 8 -0.8513 -6.2451 -5.2127 23 6 -0.7811 -6.3921 -2.7347 24 7 1.6744 -2.0008 -1.5557 25 1 -0.3933 0.4418 -0.7652 26 1 1.7923 -0.5139 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5347 1.7702 -0.0320 29 1 3.0828 0.8510 -2.2100 30 1 3.5556 -1.0348 -4.0488 31 1 1.1176 -4.5110 -2.0952 32 1 2.5824 -6.3016 -3.6905 33 1 1.1840 -5.7534 -4.6458 34 1 -0.3800 -6.7301 -0.3970 35 1 0.6119 -7.5217 1.7132 36 1 2.8359 -8.5788 1.7077 37 1 4.0632 -8.8539 -0.4091 38 1 3.0673 -8.0707 -2.5204 39 1 -0.1624 -8.9031 -3.1994 40 1 0.7385 -8.2375 -4.6292 41 1 -1.0302 -6.6754 -6.0601 42 1 -0.8848 -5.3077 -2.7721 43 1 -1.3078 -6.8388 -1.8914 44 1 1.1371 -2.6191 -1.0361 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_6580494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:26:50 Heat of formation + Delta-G solvation = -12.373879 kcal Electronic energy + Delta-G solvation = -28302.774502 eV Core-core repulsion = 24381.258975 eV Total energy + Delta-G solvation = -3921.515527 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.57516 -41.84311 -40.09110 -39.30803 -37.67498 -36.47626 -35.15176 -32.30382 -31.98897 -31.75355 -31.45473 -28.91610 -27.08122 -26.48793 -24.80751 -23.36203 -23.04923 -22.32874 -21.52650 -21.22813 -20.29492 -19.49836 -18.69563 -18.10943 -17.73310 -17.09815 -16.77319 -16.49033 -16.34450 -16.05255 -15.80251 -15.64258 -15.32878 -15.13501 -15.02274 -14.67612 -14.50029 -14.37897 -14.17818 -14.07339 -13.98309 -13.71098 -13.57285 -13.24118 -13.09027 -12.71468 -12.26872 -12.20207 -12.06897 -11.97671 -11.61629 -11.44297 -11.24464 -10.75722 -10.67618 -10.23324 -10.09286 -9.88710 -9.66535 -9.28359 -4.90548 0.28343 0.36499 0.43137 1.22824 1.53346 1.72754 1.89594 1.98070 2.19708 2.26043 2.77454 3.11676 3.33382 3.45794 3.46041 3.57897 3.68860 3.69103 3.75932 3.95581 4.07117 4.09062 4.21678 4.24413 4.30905 4.39129 4.43463 4.47957 4.56858 4.62500 4.70678 4.79418 4.82777 4.93814 4.95357 5.02002 5.08614 5.10185 5.12958 5.17103 5.22804 5.53332 5.57123 5.58582 5.61711 5.77854 6.04497 6.24029 6.41220 6.66731 6.85711 7.00045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.056 4.056 3 Si 0.806 3.194 4 C 0.029 3.971 5 C -0.204 4.204 6 C -0.116 4.116 7 C -0.066 4.066 8 C 0.586 3.414 9 O -0.572 6.572 10 N -0.709 5.709 11 C 0.149 3.851 12 C -0.047 4.047 13 C -0.072 4.072 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.134 4.134 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.146 4.146 20 C 0.080 3.920 21 H 0.088 0.912 22 O -0.568 6.568 23 C -0.127 4.127 24 N -0.513 5.513 25 H 0.399 0.601 26 H 0.115 0.885 27 H -0.293 1.293 28 H -0.285 1.285 29 H 0.170 0.830 30 H 0.146 0.854 31 H 0.404 0.596 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.397 0.603 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 -0.882 2.455 5.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.165 4.165 3 Si 0.709 3.291 4 C -0.090 4.090 5 C -0.228 4.228 6 C -0.143 4.143 7 C -0.179 4.179 8 C 0.375 3.625 9 O -0.452 6.452 10 N -0.359 5.359 11 C 0.025 3.975 12 C -0.047 4.047 13 C -0.072 4.072 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.152 4.152 17 C -0.147 4.147 18 C -0.145 4.145 19 C -0.184 4.184 20 C 0.021 3.979 21 H 0.106 0.894 22 O -0.376 6.376 23 C -0.164 4.164 24 N -0.110 5.110 25 H 0.249 0.751 26 H 0.133 0.867 27 H -0.221 1.221 28 H -0.212 1.212 29 H 0.188 0.812 30 H 0.164 0.836 31 H 0.239 0.761 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.247 0.753 42 H 0.092 0.908 43 H 0.139 0.861 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.112 -0.467 3.178 5.218 hybrid contribution -0.025 -1.601 0.246 1.620 sum -4.137 -2.068 3.423 5.754 Atomic orbital electron populations 1.86473 1.16786 1.82158 1.50763 1.25089 0.85438 1.11365 0.94619 0.92948 0.77839 0.73702 0.84584 1.21389 1.03052 0.84890 0.99627 1.20940 1.05202 1.01189 0.95484 1.21488 1.00691 0.91403 1.00723 1.20309 1.09101 0.96299 0.92235 1.17251 0.78526 0.82730 0.83994 1.90831 1.46420 1.83803 1.24104 1.45625 1.52459 1.11393 1.26426 1.21176 0.98631 0.81368 0.96282 1.20832 0.94326 0.96627 0.92913 1.19652 0.94507 0.98763 0.94271 1.21344 1.00805 1.00510 0.91531 1.21454 0.95694 0.98057 0.98958 1.21444 0.95645 0.99596 0.98511 1.21375 1.00527 0.99986 0.92851 1.21125 0.95707 0.99251 0.98397 1.23699 0.98239 0.96841 0.99613 1.22697 0.97156 0.91319 0.86711 0.89375 1.86466 1.91386 1.42282 1.17465 1.23321 0.93998 1.01803 0.97271 1.41893 1.39748 1.11395 1.17967 0.75071 0.86722 1.22091 1.21175 0.81246 0.83610 0.76115 0.92752 0.89916 0.83850 0.84366 0.85018 0.85408 0.86422 0.87842 0.90422 0.75304 0.90830 0.86136 0.73593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.07 12.88 -148.98 -1.92 0.15 16 2 C -0.06 0.20 3.08 71.24 0.22 0.42 16 3 Si 0.81 -3.69 30.54 68.60 2.10 -1.60 16 4 C 0.03 -0.02 6.47 41.34 0.27 0.25 16 5 C -0.20 -0.17 9.32 22.01 0.21 0.03 16 6 C -0.12 -0.70 10.65 22.57 0.24 -0.46 16 7 C -0.07 -0.40 7.06 40.35 0.28 -0.11 16 8 C 0.59 5.66 7.79 86.44 0.67 6.34 16 9 O -0.57 -10.30 16.88 -4.33 -0.07 -10.37 16 10 N -0.71 -2.36 5.09 -467.07 -2.38 -4.74 16 11 C 0.15 0.54 4.82 86.38 0.42 0.95 16 12 C -0.05 0.09 0.69 -52.34 -0.04 0.05 16 13 C -0.07 0.05 4.92 -19.86 -0.10 -0.05 16 14 C -0.12 0.31 9.14 22.27 0.20 0.51 16 15 C -0.12 0.19 10.05 22.27 0.22 0.41 16 16 C -0.13 -0.03 10.05 22.27 0.22 0.20 16 17 C -0.13 -0.20 10.05 22.27 0.22 0.02 16 18 C -0.13 -0.24 9.22 22.27 0.21 -0.03 16 19 C -0.15 0.54 7.04 31.18 0.22 0.76 16 20 C 0.08 -0.33 5.28 31.12 0.16 -0.17 16 21 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 22 O -0.57 0.41 11.58 -148.98 -1.72 -1.31 16 23 C -0.13 0.56 6.09 31.12 0.19 0.75 16 24 N -0.51 -0.01 5.99 -171.94 -1.03 -1.04 16 25 H 0.40 -4.30 8.70 -74.05 -0.64 -4.95 16 26 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 27 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 28 H -0.29 -0.28 7.11 99.48 0.71 0.42 16 29 H 0.17 -0.67 6.17 -2.91 -0.02 -0.69 16 30 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.40 -0.61 7.10 -92.72 -0.66 -1.27 16 32 H 0.05 0.35 7.13 -2.39 -0.02 0.33 16 33 H 0.08 0.59 6.04 -2.39 -0.01 0.58 16 34 H 0.14 -1.00 5.96 -2.91 -0.02 -1.02 16 35 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 36 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 37 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 38 H 0.12 0.19 7.46 -2.91 -0.02 0.17 16 39 H 0.10 -0.51 8.09 -2.39 -0.02 -0.53 16 40 H 0.08 -0.22 8.11 -2.39 -0.02 -0.24 16 41 H 0.40 -3.13 9.12 -74.05 -0.68 -3.81 16 42 H 0.07 -0.18 7.45 -2.39 -0.02 -0.20 16 43 H 0.12 -0.96 6.24 -2.38 -0.01 -0.98 16 44 H 0.42 -1.86 8.19 -92.70 -0.76 -2.61 16 Total: 0.00 -22.29 362.97 -2.82 -25.10 By element: Atomic # 1 Polarization: -14.47 SS G_CDS: -1.61 Total: -16.08 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 3.83 Total: 9.88 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: -3.41 Total: -5.77 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -3.72 Total: -11.53 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.10 Total: -1.60 kcal Total: -22.29 -2.82 -25.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_6580494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.731 kcal (2) G-P(sol) polarization free energy of solvation -22.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds