Wall clock time and date at job start Sat Mar 6 2021 23:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33819 * 122.44659 * 2 1 4 4 C 1.50700 * 124.52468 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.46867 * 112.32013 * 4 3 2 6 6 Si 1.86294 * 109.46919 * 232.32008 * 4 3 2 7 7 S 1.70617 * 110.95119 * 179.73599 * 3 2 1 8 8 C 1.75835 * 91.56612 * 0.26574 * 7 3 2 9 9 C 1.46575 * 125.45877 * 180.02562 * 8 7 3 10 10 O 1.21707 * 119.99874 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00124 * 359.97438 * 9 8 7 12 12 C 1.46507 * 120.00027 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47108 * 182.18177 * 12 11 9 14 14 C 1.50701 * 112.85188 * 69.16894 * 13 12 11 15 15 C 1.38237 * 120.00457 * 245.63022 * 14 13 12 16 16 C 1.38234 * 119.99912 * 179.81007 * 15 14 13 17 17 C 1.38237 * 120.00096 * 0.41838 * 16 15 14 18 18 C 1.38237 * 120.00006 * 359.81189 * 17 16 15 19 19 C 1.38237 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.53789 * 113.61409 * 297.97692 * 13 12 11 21 21 C 1.53784 * 87.07930 * 270.88293 * 20 13 12 22 22 H 1.08992 * 113.61561 * 220.01960 * 21 20 13 23 23 O 1.42899 * 113.61244 * 89.11685 * 21 20 13 24 24 C 1.53780 * 113.61481 * 200.47788 * 13 12 11 25 25 C 1.36652 * 109.07830 * 0.02562 * 8 7 3 26 26 H 1.09001 * 109.46832 * 84.50919 * 1 2 3 27 27 H 1.08998 * 109.47092 * 204.50420 * 1 2 3 28 28 H 1.08991 * 109.47368 * 324.51070 * 1 2 3 29 29 H 1.09001 * 109.47156 * 352.31805 * 4 3 2 30 30 H 0.96696 * 114.00057 * 60.00165 * 5 4 3 31 31 H 1.48500 * 110.00190 * 58.68025 * 6 4 3 32 32 H 1.48507 * 109.99841 * 179.97438 * 6 4 3 33 33 H 0.96995 * 120.00008 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.46886 * 302.18187 * 12 11 9 35 35 H 1.09002 * 109.46740 * 62.18199 * 12 11 9 36 36 H 1.07997 * 119.99798 * 359.97438 * 15 14 13 37 37 H 1.08000 * 119.99713 * 180.21031 * 16 15 14 38 38 H 1.07999 * 119.99705 * 179.79478 * 17 16 15 39 39 H 1.07998 * 119.99856 * 179.97438 * 18 17 16 40 40 H 1.07995 * 120.00111 * 179.97438 * 19 18 17 41 41 H 1.08994 * 113.61265 * 25.43159 * 20 13 12 42 42 H 1.09000 * 113.61519 * 156.25215 * 20 13 12 43 43 H 0.96705 * 113.99964 * 180.02562 * 23 21 20 44 44 H 1.09000 * 113.61488 * 203.66639 * 24 13 12 45 45 H 1.08994 * 113.61143 * 334.56839 * 24 13 12 46 46 H 1.08003 * 123.34403 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 1.9205 3.1544 1.2469 6 14 2.3801 3.5080 -1.3896 7 16 3.8969 0.7893 0.0073 8 6 3.5937 -0.9427 0.0023 9 6 4.6231 -1.9862 0.0056 10 8 4.3002 -3.1596 0.0021 11 7 5.9273 -1.6462 0.0126 12 6 6.9562 -2.6892 0.0154 13 6 8.3402 -2.0400 0.0783 14 6 8.6182 -1.3822 1.4054 15 6 8.7714 -0.0103 1.4782 16 6 9.0226 0.5934 2.6961 17 6 9.1291 -0.1756 3.8399 18 6 8.9807 -1.5481 3.7663 19 6 8.7262 -2.1515 2.5489 20 6 8.6562 -1.1445 -1.1313 21 6 9.2183 -2.4017 -1.8156 22 1 10.1296 -2.2186 -2.3847 23 8 8.2403 -3.1376 -2.5532 24 6 9.4742 -2.9591 -0.4054 25 6 2.2446 -1.1600 -0.0052 26 1 -0.3633 0.0983 -1.0230 27 1 -0.3633 -0.9351 0.4262 28 1 -0.3633 0.8367 0.5966 29 1 0.5560 2.4522 -0.1364 30 1 2.8645 3.2456 1.4353 31 1 2.1180 2.8379 -2.6887 32 1 1.8064 4.8777 -1.4003 33 1 6.1847 -0.7110 0.0151 34 1 6.8175 -3.3340 0.8831 35 1 6.8743 -3.2827 -0.8952 36 1 8.6922 0.5901 0.5840 37 1 9.1389 1.6656 2.7536 38 1 9.3286 0.2958 4.7909 39 1 9.0643 -2.1489 4.6598 40 1 8.6106 -3.2237 2.4913 41 1 7.7690 -0.7413 -1.6196 42 1 9.4093 -0.3836 -0.9264 43 1 8.5878 -3.9298 -2.9856 44 1 10.4520 -2.6953 -0.0024 45 1 9.2475 -4.0208 -0.3077 46 1 1.8020 -2.1452 -0.0091 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_6739946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:26:59 Heat of formation + Delta-G solvation = -28.773573 kcal Electronic energy + Delta-G solvation = -30026.348007 eV Core-core repulsion = 25974.935734 eV Total energy + Delta-G solvation = -4051.412273 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.91049 -40.68967 -39.65797 -39.22889 -37.59891 -36.41525 -35.09255 -32.59831 -31.86130 -31.67298 -29.89186 -29.08169 -27.01953 -26.33851 -24.80328 -24.00722 -23.16157 -22.29964 -21.84313 -20.41063 -19.94216 -19.25686 -18.59531 -17.83340 -17.66935 -17.54516 -16.94775 -16.59240 -16.16705 -16.12829 -15.78043 -15.76727 -15.57774 -15.22277 -15.04204 -14.89571 -14.38771 -14.36807 -14.23474 -14.14771 -14.04818 -13.64899 -13.48831 -13.23994 -13.15087 -13.05418 -12.98742 -12.68174 -12.46439 -12.27770 -12.18954 -11.97596 -11.85996 -11.57829 -11.38781 -11.16260 -10.79384 -10.71267 -10.21541 -9.78305 -9.72345 -9.57461 -9.45066 -5.18820 -0.72281 0.27746 0.46544 0.53614 0.66647 1.04205 1.23659 1.58688 1.86891 1.94522 2.03225 2.87186 3.18899 3.33700 3.38526 3.51059 3.54845 3.64619 3.75897 3.79152 3.99939 4.03456 4.15332 4.17004 4.19499 4.32231 4.37201 4.42487 4.45987 4.53360 4.65718 4.68241 4.72825 4.76436 4.77961 4.86330 4.87958 4.92280 5.01830 5.11712 5.16554 5.20307 5.21949 5.23835 5.26224 5.32320 5.63152 5.68659 5.70968 6.14825 6.30103 6.57581 6.89754 6.97829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.112 4.112 3 C -0.240 4.240 4 C -0.039 4.039 5 O -0.545 6.545 6 Si 0.759 3.241 7 S 0.275 5.725 8 C -0.286 4.286 9 C 0.588 3.412 10 O -0.573 6.573 11 N -0.704 5.704 12 C 0.148 3.852 13 C -0.049 4.049 14 C -0.073 4.073 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.126 4.126 21 C 0.079 3.921 22 H 0.089 0.911 23 O -0.568 6.568 24 C -0.146 4.146 25 C -0.059 4.059 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.394 0.606 31 H -0.283 1.283 32 H -0.273 1.273 33 H 0.407 0.593 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.396 0.604 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 4.880 -0.886 8.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.125 4.125 3 C -0.360 4.360 4 C -0.150 4.150 5 O -0.353 6.353 6 Si 0.661 3.339 7 S 0.545 5.455 8 C -0.406 4.406 9 C 0.375 3.625 10 O -0.455 6.455 11 N -0.355 5.355 12 C 0.025 3.975 13 C -0.049 4.049 14 C -0.073 4.073 15 C -0.140 4.140 16 C -0.138 4.138 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.163 4.163 21 C 0.020 3.980 22 H 0.106 0.894 23 O -0.377 6.377 24 C -0.184 4.184 25 C -0.093 4.093 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.243 0.757 31 H -0.209 1.209 32 H -0.198 1.198 33 H 0.244 0.756 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.141 0.859 43 H 0.246 0.754 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.669 5.889 -1.363 9.001 hybrid contribution -1.584 -1.901 0.291 2.492 sum 5.085 3.988 -1.073 6.551 Atomic orbital electron populations 1.20643 0.88428 1.03802 1.03157 1.18807 0.98900 0.90801 1.04003 1.24736 0.99977 1.00952 1.10320 1.24799 1.04194 0.89600 0.96437 1.86545 1.31765 1.79698 1.37305 0.94234 0.88586 0.76817 0.74254 1.82200 1.01149 0.95350 1.66810 1.24553 0.97696 0.98671 1.19675 1.17158 0.82412 0.87128 0.75836 1.90820 1.82366 1.20070 1.52229 1.45610 1.04549 1.11002 1.74333 1.21209 0.84475 0.89471 1.02352 1.20824 0.93893 0.98086 0.92090 1.19652 0.99939 0.94040 0.93697 1.21338 1.00049 0.93727 0.98854 1.21466 0.98925 1.01028 0.92374 1.21448 1.00162 0.93987 0.99622 1.21357 0.99974 0.95671 0.97928 1.21099 1.00675 1.00034 0.92799 1.23328 1.02858 0.96387 0.93710 1.22715 0.91656 0.92776 0.90837 0.89354 1.86457 1.38323 1.43452 1.69429 1.23672 0.98084 0.99628 0.97066 1.20749 0.91358 1.00206 0.96966 0.90219 0.90653 0.90611 0.85643 0.75652 1.20898 1.19823 0.75630 0.92788 0.89855 0.83623 0.83937 0.85049 0.85641 0.86583 0.90495 0.85900 0.75375 0.87732 0.90616 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 9.46 71.24 0.67 0.64 16 2 C -0.11 -0.38 5.78 -21.05 -0.12 -0.51 16 3 C -0.24 -0.11 4.84 24.68 0.12 0.01 16 4 C -0.04 0.06 2.76 71.24 0.20 0.25 16 5 O -0.55 0.69 12.88 -148.98 -1.92 -1.23 16 6 Si 0.76 -2.35 32.10 68.60 2.20 -0.14 16 7 S 0.28 -0.68 20.80 -56.49 -1.17 -1.86 16 8 C -0.29 -1.67 6.45 24.07 0.16 -1.52 16 9 C 0.59 5.76 7.78 86.42 0.67 6.43 16 10 O -0.57 -10.44 16.84 -4.37 -0.07 -10.51 16 11 N -0.70 -2.48 5.15 -467.17 -2.40 -4.88 16 12 C 0.15 0.52 4.84 86.38 0.42 0.94 16 13 C -0.05 0.12 0.63 -52.40 -0.03 0.09 16 14 C -0.07 0.10 4.78 -19.86 -0.09 0.01 16 15 C -0.12 0.48 9.05 22.27 0.20 0.68 16 16 C -0.12 0.38 10.05 22.27 0.22 0.61 16 17 C -0.13 0.12 10.05 22.27 0.22 0.35 16 18 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 19 C -0.13 -0.15 9.28 22.27 0.21 0.05 16 20 C -0.13 0.68 5.90 31.12 0.18 0.86 16 21 C 0.08 -0.39 5.28 31.12 0.16 -0.22 16 22 H 0.09 -0.70 8.14 -2.39 -0.02 -0.71 16 23 O -0.57 0.81 11.54 -148.98 -1.72 -0.91 16 24 C -0.15 0.64 6.94 31.12 0.22 0.85 16 25 C -0.06 -0.39 9.78 21.72 0.21 -0.17 16 26 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.07 -0.02 8.10 -2.39 -0.02 -0.04 16 28 H 0.08 -0.04 7.03 -2.39 -0.02 -0.06 16 29 H 0.13 -0.15 6.28 -2.39 -0.01 -0.16 16 30 H 0.39 -3.68 8.70 -74.06 -0.64 -4.32 16 31 H -0.28 -0.84 7.11 99.48 0.71 -0.13 16 32 H -0.27 -0.67 7.11 99.48 0.71 0.04 16 33 H 0.41 -0.63 7.08 -92.71 -0.66 -1.29 16 34 H 0.05 0.37 7.88 -2.39 -0.02 0.35 16 35 H 0.08 0.55 5.99 -2.39 -0.01 0.54 16 36 H 0.15 -1.30 6.40 -2.91 -0.02 -1.31 16 37 H 0.14 -1.07 8.06 -2.91 -0.02 -1.09 16 38 H 0.13 -0.50 8.06 -2.91 -0.02 -0.52 16 39 H 0.13 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.12 0.11 8.06 -2.91 -0.02 0.08 16 41 H 0.08 -0.30 7.56 -2.39 -0.02 -0.32 16 42 H 0.12 -1.14 6.78 -2.39 -0.02 -1.15 16 43 H 0.40 -3.34 9.12 -74.05 -0.68 -4.02 16 44 H 0.10 -0.59 8.10 -2.39 -0.02 -0.61 16 45 H 0.08 -0.25 8.10 -2.39 -0.02 -0.27 16 46 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 Total: 0.00 -22.15 390.89 -2.14 -24.29 By element: Atomic # 1 Polarization: -13.32 SS G_CDS: -0.89 Total: -14.21 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 3.84 Total: 9.46 kcal Atomic # 7 Polarization: -2.48 SS G_CDS: -2.40 Total: -4.88 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -3.71 Total: -12.65 kcal Atomic # 14 Polarization: -2.35 SS G_CDS: 2.20 Total: -0.14 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -1.17 Total: -1.86 kcal Total: -22.15 -2.14 -24.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_6739946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.488 kcal (2) G-P(sol) polarization free energy of solvation -22.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds