Wall clock time and date at job start Sat Mar 6 2021 23:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47050 * 2 1 4 4 C 1.50698 * 109.47309 * 240.00106 * 2 1 3 5 5 C 1.32776 * 124.71148 * 300.00079 * 4 2 1 6 6 C 1.44422 * 113.08328 * 180.02562 * 5 4 2 7 7 C 1.47190 * 123.46095 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99862 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00194 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99981 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46871 * 182.08313 * 10 9 7 12 12 C 1.50702 * 112.90817 * 305.81815 * 11 10 9 13 13 C 1.38231 * 119.99798 * 101.74590 * 12 11 10 14 14 C 1.38240 * 119.99558 * 179.76431 * 13 12 11 15 15 C 1.38234 * 120.00354 * 0.51128 * 14 13 12 16 16 C 1.38238 * 119.99613 * 359.74142 * 15 14 13 17 17 C 1.38236 * 120.00316 * 0.02562 * 16 15 14 18 18 C 1.53781 * 113.61285 * 174.57010 * 11 10 9 19 19 C 1.53778 * 87.17261 * 270.92388 * 18 11 10 20 20 H 1.08994 * 113.61864 * 219.97825 * 19 18 11 21 21 O 1.42904 * 113.61335 * 89.07446 * 19 18 11 22 22 C 1.53778 * 87.08024 * 334.52486 * 19 18 11 23 23 C 1.36013 * 113.08052 * 0.24023 * 6 5 4 24 24 S 1.70444 * 110.81335 * 359.62789 * 23 6 5 25 25 H 0.96696 * 113.99915 * 60.00184 * 1 2 3 26 26 H 1.08997 * 109.46935 * 119.99902 * 2 1 3 27 27 H 1.48499 * 110.00251 * 59.99849 * 3 2 1 28 28 H 1.48500 * 110.00306 * 181.31747 * 3 2 1 29 29 H 1.08001 * 123.45370 * 0.05294 * 5 4 2 30 30 H 0.96999 * 120.00109 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.46662 * 62.08432 * 10 9 7 32 32 H 1.09002 * 109.47491 * 302.08695 * 10 9 7 33 33 H 1.07998 * 120.00586 * 0.02562 * 13 12 11 34 34 H 1.08001 * 119.99957 * 180.22870 * 14 13 12 35 35 H 1.07996 * 120.00484 * 179.72650 * 15 14 13 36 36 H 1.08006 * 119.99697 * 179.97438 * 16 15 14 37 37 H 1.07996 * 119.99968 * 179.97438 * 17 16 15 38 38 H 1.08998 * 113.61455 * 156.33500 * 18 11 10 39 39 H 1.08996 * 113.61446 * 25.51527 * 18 11 10 40 40 H 0.96700 * 113.99757 * 180.02562 * 21 19 18 41 41 H 1.09008 * 113.61295 * 139.97802 * 22 19 18 42 42 H 1.08993 * 113.61744 * 270.79868 * 22 19 18 43 43 H 1.07999 * 124.58971 * 179.74221 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6689 -1.9763 -1.5327 6 6 2.2782 -2.4007 -2.7715 7 6 2.1363 -3.7583 -3.3223 8 8 1.4783 -4.5904 -2.7272 9 7 2.7355 -4.0794 -4.4861 10 6 2.5948 -5.4307 -5.0340 11 6 3.4086 -5.5450 -6.3246 12 6 3.0606 -4.4812 -7.3337 13 6 3.8868 -3.3848 -7.4949 14 6 3.5701 -2.4114 -8.4240 15 6 2.4217 -2.5293 -9.1844 16 6 1.5928 -3.6232 -9.0195 17 6 1.9120 -4.5990 -8.0938 18 6 3.4357 -6.9660 -6.9119 19 6 4.6786 -7.2195 -6.0427 20 1 5.4516 -7.8010 -6.5451 21 8 4.3729 -7.7119 -4.7365 22 6 4.9226 -5.7019 -6.0875 23 6 3.0012 -1.4188 -3.3739 24 16 2.9451 0.0205 -2.4626 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5614 2.4679 1.2084 28 1 3.5345 1.7703 -0.0321 29 1 1.0617 -2.6222 -0.9158 30 1 3.2600 -3.4157 -4.9609 31 1 1.5445 -5.6284 -5.2481 32 1 2.9606 -6.1571 -4.3082 33 1 4.7819 -3.2906 -6.8980 34 1 4.2175 -1.5566 -8.5526 35 1 2.1720 -1.7666 -9.9072 36 1 0.6954 -3.7150 -9.6134 37 1 1.2642 -5.4534 -7.9647 38 1 3.6388 -6.9921 -7.9825 39 1 2.5745 -7.5716 -6.6296 40 1 5.1507 -7.8729 -4.1849 41 1 5.2615 -5.2859 -5.1386 42 1 5.5335 -5.3826 -6.9318 43 1 3.5367 -1.5349 -4.3046 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13154426_6894386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:27:03 Heat of formation + Delta-G solvation = -25.793187 kcal Electronic energy + Delta-G solvation = -27853.621122 eV Core-core repulsion = 23957.875707 eV Total energy + Delta-G solvation = -3895.745415 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95609 -40.52678 -39.40630 -38.73277 -37.05721 -36.40213 -34.98212 -32.03990 -31.93085 -31.71215 -28.71303 -27.08789 -26.94435 -25.57407 -24.32518 -23.30232 -22.49977 -21.86317 -20.60750 -19.91079 -18.92755 -18.65351 -17.99081 -17.84031 -17.62118 -16.73226 -16.46781 -16.31198 -15.93548 -15.90122 -15.79716 -15.41223 -15.34701 -14.96248 -14.56577 -14.37207 -14.35595 -14.10372 -14.06313 -13.78595 -13.60948 -13.47691 -13.18121 -13.06348 -12.78897 -12.66206 -12.31797 -12.24899 -11.99497 -11.88695 -11.79435 -11.25984 -10.89507 -10.75724 -10.60248 -10.03483 -9.94478 -9.90482 -9.70688 -9.46574 -5.20457 -0.33501 0.33719 0.34944 0.39499 0.69739 0.96386 1.18959 1.54945 1.86243 2.17806 2.45936 2.74952 2.96573 3.28402 3.33538 3.41690 3.54987 3.58862 3.68213 3.85000 3.88198 3.99671 4.03037 4.08980 4.15404 4.28625 4.32512 4.41471 4.50552 4.54237 4.59114 4.64487 4.73099 4.74716 4.84956 4.92801 4.96773 5.03081 5.06313 5.08299 5.16452 5.25864 5.45450 5.50800 5.55237 5.58605 5.99323 6.47650 6.54971 6.59397 7.31357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.025 4.025 3 Si 0.653 3.347 4 C -0.244 4.244 5 C -0.053 4.053 6 C -0.153 4.153 7 C 0.576 3.424 8 O -0.531 6.531 9 N -0.721 5.721 10 C 0.144 3.856 11 C -0.052 4.052 12 C -0.068 4.068 13 C -0.125 4.125 14 C -0.116 4.116 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.115 4.115 19 C 0.079 3.921 20 H 0.073 0.927 21 O -0.546 6.546 22 C -0.163 4.163 23 C -0.207 4.207 24 S 0.193 5.807 25 H 0.381 0.619 26 H 0.124 0.876 27 H -0.232 1.232 28 H -0.236 1.236 29 H 0.157 0.843 30 H 0.397 0.603 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.383 0.617 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 3.469 -5.236 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.171 4.171 7 C 0.361 3.639 8 O -0.409 6.409 9 N -0.373 5.373 10 C 0.022 3.978 11 C -0.052 4.052 12 C -0.068 4.068 13 C -0.143 4.143 14 C -0.134 4.134 15 C -0.140 4.140 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.152 4.152 19 C 0.020 3.980 20 H 0.091 0.909 21 O -0.352 6.352 22 C -0.200 4.200 23 C -0.345 4.345 24 S 0.460 5.540 25 H 0.229 0.771 26 H 0.141 0.859 27 H -0.155 1.155 28 H -0.160 1.160 29 H 0.174 0.826 30 H 0.232 0.768 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.231 0.769 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.082 4.631 -4.236 7.487 hybrid contribution 0.355 -1.714 -0.085 1.753 sum 4.437 2.917 -4.321 6.846 Atomic orbital electron populations 1.86540 1.16544 1.81677 1.49122 1.24444 0.85281 1.09052 0.95107 0.95092 0.82065 0.77605 0.89970 1.24793 1.08704 0.99157 1.03392 1.21052 0.98111 0.94355 0.94652 1.20289 1.04038 0.94851 0.97903 1.17575 0.79272 0.86570 0.80473 1.90831 1.40104 1.50310 1.59610 1.45769 1.53649 1.14388 1.23480 1.21249 0.99590 0.83733 0.93273 1.20985 0.96154 0.94306 0.93757 1.19598 0.95252 0.95226 0.96768 1.21019 0.99696 0.94210 0.99357 1.21166 0.97199 0.98933 0.96105 1.21213 0.94949 0.98144 0.99667 1.21210 0.99620 0.94214 0.98153 1.21010 0.96468 0.99297 0.96007 1.23094 0.98720 0.94092 0.99331 1.22636 0.97568 0.92995 0.84795 0.90939 1.86479 1.36808 1.86932 1.25029 1.23840 0.95115 0.97941 1.03118 1.25757 1.04571 0.98973 1.05170 1.83035 1.46954 1.11375 1.12684 0.77148 0.85881 1.15510 1.16043 0.82567 0.76840 0.91311 0.88285 0.86165 0.85948 0.85996 0.85909 0.86024 0.87974 0.89728 0.76887 0.90405 0.88657 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.26 12.85 -35.23 -0.45 -0.71 16 2 C -0.03 0.00 2.95 36.00 0.11 0.11 16 3 Si 0.65 -0.86 30.91 -169.99 -5.25 -6.12 16 4 C -0.24 -0.10 5.68 -36.18 -0.21 -0.31 16 5 C -0.05 -0.13 9.91 -39.02 -0.39 -0.51 16 6 C -0.15 -0.33 5.98 -104.63 -0.63 -0.96 16 7 C 0.58 2.33 7.79 -12.62 -0.10 2.23 16 8 O -0.53 -4.27 16.80 5.24 0.09 -4.18 16 9 N -0.72 -0.89 5.32 -61.46 -0.33 -1.22 16 10 C 0.14 0.21 4.95 -4.04 -0.02 0.19 16 11 C -0.05 0.05 0.73 -154.71 -0.11 -0.06 16 12 C -0.07 0.04 4.24 -104.62 -0.44 -0.40 16 13 C -0.12 0.17 8.09 -39.58 -0.32 -0.15 16 14 C -0.12 0.13 10.05 -39.58 -0.40 -0.27 16 15 C -0.12 0.07 10.05 -39.58 -0.40 -0.33 16 16 C -0.11 0.02 10.05 -39.58 -0.40 -0.37 16 17 C -0.11 0.00 9.38 -39.58 -0.37 -0.37 16 18 C -0.11 0.14 6.67 -25.92 -0.17 -0.04 16 19 C 0.08 -0.13 5.28 -25.92 -0.14 -0.26 16 20 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 21 O -0.55 0.16 11.51 -35.23 -0.41 -0.25 16 22 C -0.16 0.34 6.06 -25.78 -0.16 0.19 16 23 C -0.21 0.11 10.38 29.93 0.31 0.42 16 24 S 0.19 -0.25 20.18 -107.50 -2.17 -2.42 16 25 H 0.38 -1.29 8.70 45.56 0.40 -0.89 16 26 H 0.12 0.01 7.96 -51.93 -0.41 -0.40 16 27 H -0.23 -0.34 7.11 56.52 0.40 0.06 16 28 H -0.24 -0.11 7.11 56.52 0.40 0.30 16 29 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 30 H 0.40 -0.32 5.61 -40.82 -0.23 -0.55 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.30 5.95 -51.93 -0.31 -0.01 16 33 H 0.12 -0.35 7.09 -52.49 -0.37 -0.72 16 34 H 0.12 -0.34 8.06 -52.49 -0.42 -0.76 16 35 H 0.12 -0.24 8.06 -52.49 -0.42 -0.67 16 36 H 0.12 -0.18 8.06 -52.48 -0.42 -0.61 16 37 H 0.12 -0.08 8.01 -52.49 -0.42 -0.50 16 38 H 0.10 -0.20 8.09 -51.93 -0.42 -0.62 16 39 H 0.08 -0.03 8.10 -51.93 -0.42 -0.45 16 40 H 0.38 -1.46 9.12 45.56 0.42 -1.05 16 41 H 0.08 -0.14 8.10 -51.92 -0.42 -0.56 16 42 H 0.09 -0.27 7.52 -51.93 -0.39 -0.66 16 43 H 0.17 -0.50 7.01 -52.49 -0.37 -0.87 16 LS Contribution 369.78 15.07 5.57 5.57 Total: 0.00 -8.43 369.78 -11.46 -19.90 By element: Atomic # 1 Polarization: -5.01 SS G_CDS: -4.69 Total: -9.69 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.83 Total: -0.89 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -0.33 Total: -1.22 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.77 Total: -5.14 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.25 Total: -6.12 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.17 Total: -2.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -8.43 -11.46 -19.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_6894386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.897 kcal (2) G-P(sol) polarization free energy of solvation -8.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds