Wall clock time and date at job start Sat Mar 6 2021 23:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47050 * 2 1 4 4 C 1.50698 * 109.47309 * 240.00106 * 2 1 3 5 5 C 1.32776 * 124.71148 * 300.00079 * 4 2 1 6 6 C 1.44422 * 113.08328 * 180.02562 * 5 4 2 7 7 C 1.47190 * 123.46095 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99862 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00194 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99981 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46871 * 182.08313 * 10 9 7 12 12 C 1.50702 * 112.90817 * 305.81815 * 11 10 9 13 13 C 1.38231 * 119.99798 * 101.74590 * 12 11 10 14 14 C 1.38240 * 119.99558 * 179.76431 * 13 12 11 15 15 C 1.38234 * 120.00354 * 0.51128 * 14 13 12 16 16 C 1.38238 * 119.99613 * 359.74142 * 15 14 13 17 17 C 1.38236 * 120.00316 * 0.02562 * 16 15 14 18 18 C 1.53781 * 113.61285 * 174.57010 * 11 10 9 19 19 C 1.53778 * 87.17261 * 270.92388 * 18 11 10 20 20 H 1.08994 * 113.61864 * 219.97825 * 19 18 11 21 21 O 1.42904 * 113.61335 * 89.07446 * 19 18 11 22 22 C 1.53778 * 87.08024 * 334.52486 * 19 18 11 23 23 C 1.36013 * 113.08052 * 0.24023 * 6 5 4 24 24 S 1.70444 * 110.81335 * 359.62789 * 23 6 5 25 25 H 0.96696 * 113.99915 * 60.00184 * 1 2 3 26 26 H 1.08997 * 109.46935 * 119.99902 * 2 1 3 27 27 H 1.48499 * 110.00251 * 59.99849 * 3 2 1 28 28 H 1.48500 * 110.00306 * 181.31747 * 3 2 1 29 29 H 1.08001 * 123.45370 * 0.05294 * 5 4 2 30 30 H 0.96999 * 120.00109 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.46662 * 62.08432 * 10 9 7 32 32 H 1.09002 * 109.47491 * 302.08695 * 10 9 7 33 33 H 1.07998 * 120.00586 * 0.02562 * 13 12 11 34 34 H 1.08001 * 119.99957 * 180.22870 * 14 13 12 35 35 H 1.07996 * 120.00484 * 179.72650 * 15 14 13 36 36 H 1.08006 * 119.99697 * 179.97438 * 16 15 14 37 37 H 1.07996 * 119.99968 * 179.97438 * 17 16 15 38 38 H 1.08998 * 113.61455 * 156.33500 * 18 11 10 39 39 H 1.08996 * 113.61446 * 25.51527 * 18 11 10 40 40 H 0.96700 * 113.99757 * 180.02562 * 21 19 18 41 41 H 1.09008 * 113.61295 * 139.97802 * 22 19 18 42 42 H 1.08993 * 113.61744 * 270.79868 * 22 19 18 43 43 H 1.07999 * 124.58971 * 179.74221 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6689 -1.9763 -1.5327 6 6 2.2782 -2.4007 -2.7715 7 6 2.1363 -3.7583 -3.3223 8 8 1.4783 -4.5904 -2.7272 9 7 2.7355 -4.0794 -4.4861 10 6 2.5948 -5.4307 -5.0340 11 6 3.4086 -5.5450 -6.3246 12 6 3.0606 -4.4812 -7.3337 13 6 3.8868 -3.3848 -7.4949 14 6 3.5701 -2.4114 -8.4240 15 6 2.4217 -2.5293 -9.1844 16 6 1.5928 -3.6232 -9.0195 17 6 1.9120 -4.5990 -8.0938 18 6 3.4357 -6.9660 -6.9119 19 6 4.6786 -7.2195 -6.0427 20 1 5.4516 -7.8010 -6.5451 21 8 4.3729 -7.7119 -4.7365 22 6 4.9226 -5.7019 -6.0875 23 6 3.0012 -1.4188 -3.3739 24 16 2.9451 0.0205 -2.4626 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5614 2.4679 1.2084 28 1 3.5345 1.7703 -0.0321 29 1 1.0617 -2.6222 -0.9158 30 1 3.2600 -3.4157 -4.9609 31 1 1.5445 -5.6284 -5.2481 32 1 2.9606 -6.1571 -4.3082 33 1 4.7819 -3.2906 -6.8980 34 1 4.2175 -1.5566 -8.5526 35 1 2.1720 -1.7666 -9.9072 36 1 0.6954 -3.7150 -9.6134 37 1 1.2642 -5.4534 -7.9647 38 1 3.6388 -6.9921 -7.9825 39 1 2.5745 -7.5716 -6.6296 40 1 5.1507 -7.8729 -4.1849 41 1 5.2615 -5.2859 -5.1386 42 1 5.5335 -5.3826 -6.9318 43 1 3.5367 -1.5349 -4.3046 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_6894386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:27:02 Heat of formation + Delta-G solvation = -25.808977 kcal Electronic energy + Delta-G solvation = -27853.621806 eV Core-core repulsion = 23957.875707 eV Total energy + Delta-G solvation = -3895.746099 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.93728 -40.70172 -39.29677 -38.80956 -37.12767 -36.44411 -35.12979 -32.02804 -31.83710 -31.65630 -28.79846 -26.98851 -26.96428 -25.60729 -24.34290 -23.19253 -22.40635 -21.98681 -20.73344 -19.89116 -18.92502 -18.57050 -18.10994 -17.76060 -17.62697 -16.80584 -16.55059 -16.30457 -16.02908 -15.96660 -15.74239 -15.40055 -15.24438 -14.97677 -14.55410 -14.48133 -14.25254 -14.14563 -14.11599 -13.70891 -13.67695 -13.54119 -13.10889 -13.05454 -12.72570 -12.67644 -12.29894 -12.20980 -11.97065 -11.87542 -11.70447 -11.16431 -11.11129 -10.71971 -10.61248 -10.22847 -10.00012 -9.82016 -9.62351 -9.45304 -5.12464 -0.37381 0.36530 0.42545 0.49279 0.66996 0.80007 1.22215 1.59907 1.90384 2.03931 2.22952 2.84000 3.12598 3.36026 3.39639 3.50048 3.63793 3.66349 3.74230 3.84367 3.92838 4.04453 4.13354 4.16853 4.24960 4.29557 4.40171 4.42077 4.53344 4.63617 4.68415 4.71189 4.73812 4.82151 4.84499 4.96194 4.98460 5.08230 5.13318 5.14878 5.16214 5.19770 5.31901 5.59725 5.65325 5.67230 6.10934 6.40454 6.67613 6.85393 7.09406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.040 4.040 3 Si 0.740 3.260 4 C -0.247 4.247 5 C -0.076 4.076 6 C -0.182 4.182 7 C 0.571 3.429 8 O -0.585 6.585 9 N -0.704 5.704 10 C 0.148 3.852 11 C -0.045 4.045 12 C -0.074 4.074 13 C -0.125 4.125 14 C -0.119 4.119 15 C -0.132 4.132 16 C -0.128 4.128 17 C -0.126 4.126 18 C -0.119 4.119 19 C 0.077 3.923 20 H 0.088 0.912 21 O -0.569 6.569 22 C -0.150 4.150 23 C -0.193 4.193 24 S 0.260 5.740 25 H 0.397 0.603 26 H 0.114 0.886 27 H -0.272 1.272 28 H -0.251 1.251 29 H 0.131 0.869 30 H 0.409 0.591 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.396 0.604 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 5.621 -6.710 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.151 4.151 3 Si 0.642 3.358 4 C -0.364 4.364 5 C -0.106 4.106 6 C -0.200 4.200 7 C 0.358 3.642 8 O -0.467 6.467 9 N -0.355 5.355 10 C 0.025 3.975 11 C -0.046 4.046 12 C -0.074 4.074 13 C -0.142 4.142 14 C -0.137 4.137 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.144 4.144 18 C -0.156 4.156 19 C 0.018 3.982 20 H 0.106 0.894 21 O -0.378 6.378 22 C -0.188 4.188 23 C -0.331 4.331 24 S 0.527 5.473 25 H 0.247 0.753 26 H 0.131 0.869 27 H -0.198 1.198 28 H -0.176 1.176 29 H 0.149 0.851 30 H 0.246 0.754 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.246 0.754 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.233 6.781 -5.755 10.860 hybrid contribution -0.329 -2.342 0.394 2.398 sum 5.904 4.439 -5.360 9.126 Atomic orbital electron populations 1.86501 1.17029 1.82240 1.50325 1.24751 0.85178 1.10512 0.94684 0.94143 0.79556 0.74244 0.87902 1.24929 1.08662 0.98703 1.04103 1.20949 0.99235 0.95117 0.95279 1.20093 1.06546 0.94628 0.98716 1.17971 0.78551 0.87004 0.80643 1.90793 1.42682 1.52008 1.61236 1.45633 1.52772 1.14546 1.22594 1.21128 0.98785 0.83446 0.94153 1.20838 0.96813 0.94553 0.92368 1.19631 0.95344 0.95662 0.96728 1.21251 1.00042 0.93558 0.99384 1.21452 0.97108 0.99497 0.95600 1.21459 0.95193 0.98194 1.00110 1.21382 1.00230 0.94580 0.98424 1.21120 0.97032 0.99564 0.96718 1.23155 0.98618 0.93779 1.00087 1.22725 0.97476 0.93719 0.84290 0.89415 1.86452 1.38283 1.87127 1.25916 1.23800 0.93911 0.97345 1.03720 1.26115 1.02707 0.98590 1.05685 1.82819 1.44625 1.09485 1.10420 0.75322 0.86871 1.19771 1.17638 0.85148 0.75371 0.93479 0.90009 0.84131 0.83924 0.84836 0.85422 0.86516 0.86896 0.91304 0.75360 0.90329 0.87057 0.78544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.03 12.85 -148.98 -1.91 -2.94 16 2 C -0.04 -0.01 2.95 71.24 0.21 0.20 16 3 Si 0.74 -2.56 30.91 68.60 2.12 -0.44 16 4 C -0.25 -0.26 5.68 24.51 0.14 -0.12 16 5 C -0.08 -0.51 9.91 22.67 0.22 -0.29 16 6 C -0.18 -0.95 5.98 -19.87 -0.12 -1.07 16 7 C 0.57 5.82 7.79 86.59 0.67 6.50 16 8 O -0.59 -11.63 16.80 -4.16 -0.07 -11.70 16 9 N -0.70 -2.43 5.32 -466.58 -2.48 -4.91 16 10 C 0.15 0.71 4.95 86.38 0.43 1.14 16 11 C -0.05 0.07 0.73 -52.31 -0.04 0.03 16 12 C -0.07 0.11 4.24 -19.87 -0.08 0.03 16 13 C -0.12 0.56 8.09 22.27 0.18 0.74 16 14 C -0.12 0.51 10.05 22.27 0.22 0.73 16 15 C -0.13 0.28 10.05 22.27 0.22 0.51 16 16 C -0.13 0.02 10.05 22.27 0.22 0.24 16 17 C -0.13 -0.09 9.38 22.27 0.21 0.12 16 18 C -0.12 0.19 6.67 31.12 0.21 0.40 16 19 C 0.08 -0.25 5.28 31.12 0.16 -0.08 16 20 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 21 O -0.57 -0.26 11.51 -148.98 -1.72 -1.97 16 22 C -0.15 0.78 6.06 31.21 0.19 0.97 16 23 C -0.19 0.51 10.38 67.30 0.70 1.20 16 24 S 0.26 -1.20 20.18 -56.49 -1.14 -2.34 16 25 H 0.40 -2.59 8.70 -74.06 -0.64 -3.23 16 26 H 0.11 0.18 7.96 -2.39 -0.02 0.16 16 27 H -0.27 -0.88 7.11 99.48 0.71 -0.17 16 28 H -0.25 0.22 7.11 99.48 0.71 0.93 16 29 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.41 -0.93 5.61 -92.71 -0.52 -1.45 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.71 5.95 -2.39 -0.01 0.70 16 33 H 0.14 -1.25 7.09 -2.91 -0.02 -1.27 16 34 H 0.14 -1.22 8.06 -2.91 -0.02 -1.25 16 35 H 0.13 -0.68 8.06 -2.91 -0.02 -0.71 16 36 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 37 H 0.12 0.08 8.01 -2.91 -0.02 0.06 16 38 H 0.11 -0.44 8.09 -2.39 -0.02 -0.46 16 39 H 0.07 0.11 8.10 -2.39 -0.02 0.09 16 40 H 0.40 -2.74 9.12 -74.06 -0.68 -3.42 16 41 H 0.08 -0.38 8.10 -2.38 -0.02 -0.40 16 42 H 0.11 -0.88 7.52 -2.39 -0.02 -0.90 16 43 H 0.20 -1.80 7.01 -2.91 -0.02 -1.82 16 Total: 0.00 -23.10 369.78 -2.18 -25.27 By element: Atomic # 1 Polarization: -11.47 SS G_CDS: -0.73 Total: -12.20 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 3.75 Total: 11.24 kcal Atomic # 7 Polarization: -2.43 SS G_CDS: -2.48 Total: -4.91 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -3.70 Total: -16.62 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.12 Total: -0.44 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -1.14 Total: -2.34 kcal Total: -23.10 -2.18 -25.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_6894386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.535 kcal (2) G-P(sol) polarization free energy of solvation -23.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds