Wall clock time and date at job start Sat Mar 6 2021 23:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37933 * 120.07506 * 2 1 4 4 C 1.38390 * 120.14664 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.85142 * 179.97438 * 4 3 2 6 6 C 1.38338 * 120.28947 * 359.97438 * 4 3 2 7 7 C 1.50698 * 119.92191 * 179.97438 * 6 4 3 8 8 O 1.42902 * 109.46790 * 75.00503 * 7 6 4 9 9 Si 1.86303 * 109.46950 * 195.00233 * 7 6 4 10 10 C 1.37975 * 120.14653 * 0.25581 * 6 4 3 11 11 C 1.39561 * 119.85012 * 359.47409 * 10 6 4 12 12 C 1.47841 * 120.14067 * 180.25137 * 11 10 6 13 13 O 1.21560 * 120.00249 * 189.27902 * 12 11 10 14 14 N 1.34782 * 120.00564 * 9.27380 * 12 11 10 15 15 C 1.46499 * 120.00281 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46956 * 184.87605 * 15 14 12 17 17 C 1.50699 * 112.85283 * 294.86547 * 16 15 14 18 18 C 1.38236 * 120.00147 * 123.57496 * 17 16 15 19 19 C 1.38237 * 120.00120 * 179.77060 * 18 17 16 20 20 C 1.38240 * 119.99760 * 0.47939 * 19 18 17 21 21 C 1.38236 * 119.99703 * 359.79628 * 20 19 18 22 22 C 1.38233 * 120.00400 * 359.95412 * 21 20 19 23 23 C 1.53781 * 113.61324 * 163.66622 * 16 15 14 24 24 C 1.54044 * 86.98858 * 270.84022 * 23 16 15 25 25 H 1.09000 * 113.61911 * 220.02084 * 24 23 16 26 26 O 1.42901 * 113.69186 * 89.12651 * 24 23 16 27 27 C 1.53780 * 87.07927 * 334.56760 * 24 23 16 28 28 H 1.08996 * 109.46963 * 96.89061 * 1 2 3 29 29 H 1.09001 * 109.47176 * 216.89114 * 1 2 3 30 30 H 1.09004 * 109.47023 * 336.88867 * 1 2 3 31 31 H 1.08005 * 119.92699 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47273 * 270.02183 * 5 4 3 33 33 H 1.08997 * 109.47529 * 30.02294 * 5 4 3 34 34 H 1.09006 * 109.46753 * 150.02321 * 5 4 3 35 35 H 1.08998 * 109.47835 * 315.00236 * 7 6 4 36 36 H 0.96700 * 114.00381 * 299.99914 * 8 7 6 37 37 H 1.48502 * 109.99883 * 298.68357 * 9 7 6 38 38 H 1.48497 * 110.00214 * 60.00170 * 9 7 6 39 39 H 1.07996 * 120.07208 * 179.72670 * 10 6 4 40 40 H 0.97000 * 119.99403 * 0.02562 * 14 12 11 41 41 H 1.09002 * 109.47330 * 304.88079 * 15 14 12 42 42 H 1.09002 * 109.46937 * 64.88021 * 15 14 12 43 43 H 1.07999 * 119.99882 * 0.02562 * 18 17 16 44 44 H 1.07999 * 120.00127 * 180.25381 * 19 18 17 45 45 H 1.07999 * 120.00018 * 179.76906 * 20 19 18 46 46 H 1.08004 * 119.99350 * 179.97438 * 21 20 19 47 47 H 1.08003 * 120.00012 * 180.02562 * 22 21 20 48 48 H 1.09003 * 113.61415 * 25.44117 * 23 16 15 49 49 H 1.09004 * 113.61009 * 156.33204 * 23 16 15 50 50 H 0.96701 * 114.00097 * 82.46682 * 26 24 23 51 51 H 1.08999 * 113.61787 * 270.88178 * 27 24 23 52 52 H 1.09003 * 113.61677 * 139.97435 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5821 1.1954 -0.0005 5 6 4.3306 2.5033 -0.0011 6 6 4.2813 0.0017 -0.0005 7 6 5.7883 0.0133 -0.0017 8 8 6.2628 0.3661 1.2992 9 14 6.4219 -1.6788 -0.4561 10 6 3.6021 -1.1993 -0.0053 11 6 2.2065 -1.2080 0.0009 12 6 1.4722 -2.4912 0.0014 13 8 0.2678 -2.5023 -0.1629 14 7 2.1380 -3.6487 0.1840 15 6 1.4102 -4.9201 0.1851 16 6 2.3725 -6.0583 0.5308 17 6 3.4395 -6.2603 -0.5140 18 6 4.7743 -6.2049 -0.1587 19 6 5.7529 -6.3949 -1.1163 20 6 5.3969 -6.6306 -2.4311 21 6 4.0622 -6.6804 -2.7874 22 6 3.0835 -6.4955 -1.8289 23 6 1.6646 -7.3582 0.9478 24 6 1.6998 -6.8189 2.3903 25 1 1.9282 -7.5806 3.1359 26 8 0.5605 -6.0285 2.7358 27 6 2.9212 -5.9867 1.9657 28 1 -0.3633 -0.1233 -1.0202 29 1 -0.3633 -0.8219 0.6169 30 1 -0.3633 0.9452 0.4034 31 1 1.6582 2.1290 0.0004 32 1 4.5103 2.8187 -1.0289 33 1 3.7390 3.2607 0.5131 34 1 5.2839 2.3766 0.5121 35 1 6.1456 0.7423 -0.7289 36 1 5.9711 1.2370 1.6015 37 1 5.9681 -2.6769 0.5454 38 1 5.9352 -2.0575 -1.8070 39 1 4.1492 -2.1304 -0.0098 40 1 3.0990 -3.6398 0.3155 41 1 0.6120 -4.8813 0.9264 42 1 0.9814 -5.0941 -0.8018 43 1 5.0524 -6.0171 0.8678 44 1 6.7957 -6.3556 -0.8379 45 1 6.1616 -6.7754 -3.1799 46 1 3.7841 -6.8641 -3.8148 47 1 2.0407 -6.5348 -2.1073 48 1 0.6580 -7.4570 0.5414 49 1 2.2710 -8.2520 0.8008 50 1 -0.2109 -6.5464 3.0037 51 1 3.8705 -6.5061 2.0966 52 1 2.9284 -4.9787 2.3806 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_9599494.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:27:12 Heat of formation + Delta-G solvation = -31.853528 kcal Electronic energy + Delta-G solvation = -34703.787688 eV Core-core repulsion = 30407.551992 eV Total energy + Delta-G solvation = -4296.235695 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.16743 -41.50497 -40.05594 -39.35508 -37.71082 -36.57187 -35.38565 -34.39253 -33.53441 -32.02935 -31.78265 -29.92459 -28.92346 -27.99182 -26.98403 -25.62256 -24.84241 -23.86579 -23.34135 -22.62710 -22.20461 -21.25162 -20.02324 -18.93143 -18.74168 -18.37532 -17.78271 -17.35340 -16.79346 -16.68185 -16.46682 -16.37095 -16.26257 -15.84715 -15.65303 -15.45855 -15.30134 -14.99852 -14.78554 -14.68360 -14.51678 -14.34214 -14.12828 -14.01888 -13.88574 -13.69944 -13.38325 -13.27081 -13.11691 -13.06463 -12.86393 -12.79832 -12.73422 -12.65731 -12.32527 -12.29657 -12.00618 -11.66617 -11.37998 -11.34662 -11.18673 -10.84913 -10.79051 -10.28236 -10.04925 -9.92527 -9.74073 -9.70023 -4.91959 -0.41822 0.00830 0.32859 0.39423 1.27953 1.53455 1.62474 1.85719 1.89927 2.48642 2.74085 3.06200 3.26651 3.31020 3.39157 3.41667 3.45680 3.63222 3.65261 3.67902 3.77384 3.85962 4.01474 4.03401 4.06079 4.06892 4.19459 4.32004 4.34444 4.38381 4.42901 4.44979 4.51963 4.56571 4.58764 4.65406 4.67125 4.69197 4.74451 4.74924 4.78387 4.89581 4.93835 4.97984 5.00640 5.05168 5.07653 5.11801 5.12766 5.24672 5.30894 5.36107 5.50208 5.55038 5.57875 5.67809 6.01177 6.21978 6.60040 6.81702 6.93439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.028 4.028 3 C -0.128 4.128 4 C -0.038 4.038 5 C -0.125 4.125 6 C -0.138 4.138 7 C -0.083 4.083 8 O -0.543 6.543 9 Si 0.790 3.210 10 C -0.090 4.090 11 C -0.162 4.162 12 C 0.552 3.448 13 O -0.558 6.558 14 N -0.714 5.714 15 C 0.147 3.853 16 C -0.051 4.051 17 C -0.076 4.076 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.141 4.141 24 C 0.083 3.917 25 H 0.091 0.909 26 O -0.568 6.568 27 C -0.131 4.131 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.375 0.625 37 H -0.277 1.277 38 H -0.275 1.275 39 H 0.120 0.880 40 H 0.400 0.600 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.119 0.881 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.397 0.603 51 H 0.119 0.881 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 0.467 0.460 5.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.029 4.029 3 C -0.146 4.146 4 C -0.038 4.038 5 C -0.181 4.181 6 C -0.138 4.138 7 C -0.192 4.192 8 O -0.351 6.351 9 Si 0.692 3.308 10 C -0.108 4.108 11 C -0.165 4.165 12 C 0.341 3.659 13 O -0.439 6.439 14 N -0.364 5.364 15 C 0.024 3.976 16 C -0.051 4.051 17 C -0.076 4.076 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.179 4.179 24 C 0.023 3.977 25 H 0.109 0.891 26 O -0.377 6.377 27 C -0.168 4.168 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.176 0.824 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.226 0.774 37 H -0.204 1.204 38 H -0.202 1.202 39 H 0.137 0.863 40 H 0.235 0.765 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.150 0.850 47 H 0.137 0.863 48 H 0.099 0.901 49 H 0.124 0.876 50 H 0.248 0.752 51 H 0.137 0.863 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.344 -0.476 -0.046 5.365 hybrid contribution -1.577 0.296 0.098 1.607 sum 3.767 -0.180 0.053 3.772 Atomic orbital electron populations 1.20979 0.89686 1.03327 1.03058 1.20280 0.97275 0.91760 0.93599 1.21310 0.93784 0.97965 1.01528 1.20364 0.93717 0.95856 0.93895 1.21079 1.00465 0.92186 1.04341 1.20320 0.97235 0.92683 1.03564 1.25312 0.89906 1.14857 0.89136 1.86769 1.75261 1.41105 1.32005 0.92676 0.90304 0.71356 0.76455 1.21160 0.93051 0.98106 0.98514 1.19750 0.93508 0.93393 1.09842 1.18477 0.86812 0.84312 0.76306 1.90724 1.14950 1.87477 1.50721 1.45813 1.11562 1.06055 1.72994 1.21227 0.94246 0.80506 1.01608 1.20864 0.94496 0.96294 0.93440 1.19664 0.93972 1.00087 0.93880 1.21361 0.92146 1.00880 1.00614 1.21503 1.00518 0.99011 0.93185 1.21491 0.96563 0.99711 0.97102 1.21412 0.93385 0.99755 1.00024 1.21114 0.99795 1.00478 0.92982 1.23684 1.01576 0.95757 0.96849 1.22735 0.86786 0.93149 0.94984 0.89104 1.86461 1.24399 1.37879 1.88945 1.23339 0.98374 1.01597 0.93516 0.91103 0.91030 0.89958 0.82443 0.89035 0.89187 0.89830 0.88128 0.77419 1.20418 1.20150 0.86312 0.76477 0.89565 0.92483 0.84603 0.83917 0.84352 0.85011 0.86305 0.90136 0.87572 0.75211 0.86257 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 8.68 71.24 0.62 -0.29 16 2 C -0.03 -0.23 5.91 -19.61 -0.12 -0.35 16 3 C -0.13 -0.36 9.31 22.23 0.21 -0.16 16 4 C -0.04 -0.04 5.87 -19.81 -0.12 -0.15 16 5 C -0.12 0.79 9.27 71.23 0.66 1.45 16 6 C -0.14 -0.53 5.26 -19.90 -0.10 -0.63 16 7 C -0.08 0.02 1.96 71.24 0.14 0.16 16 8 O -0.54 -0.01 12.64 -148.98 -1.88 -1.89 16 9 Si 0.79 0.19 30.39 68.60 2.08 2.27 16 10 C -0.09 -0.70 8.11 22.53 0.18 -0.52 16 11 C -0.16 -1.72 5.87 -20.09 -0.12 -1.84 16 12 C 0.55 7.35 7.67 86.78 0.67 8.02 16 13 O -0.56 -10.21 13.43 -3.90 -0.05 -10.27 16 14 N -0.71 -6.36 5.14 -465.96 -2.40 -8.76 16 15 C 0.15 1.03 4.74 86.38 0.41 1.44 16 16 C -0.05 -0.08 0.67 -52.40 -0.04 -0.12 16 17 C -0.08 -0.20 4.58 -19.87 -0.09 -0.29 16 18 C -0.13 -0.18 9.13 22.27 0.20 0.03 16 19 C -0.12 -0.09 10.05 22.27 0.22 0.13 16 20 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 21 C -0.13 -0.35 10.05 22.27 0.22 -0.13 16 22 C -0.13 -0.48 9.29 22.27 0.21 -0.27 16 23 C -0.14 0.22 7.08 31.21 0.22 0.44 16 24 C 0.08 -0.11 5.28 31.21 0.16 0.05 16 25 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 26 O -0.57 -0.98 11.52 -148.98 -1.72 -2.70 16 27 C -0.13 -0.03 6.25 31.12 0.19 0.16 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.91 5.97 -2.39 -0.01 0.90 16 30 H 0.08 0.23 8.04 -2.39 -0.02 0.21 16 31 H 0.16 -0.39 8.05 -2.91 -0.02 -0.41 16 32 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.09 -0.74 8.08 -2.39 -0.02 -0.76 16 34 H 0.08 -0.75 4.96 -2.38 -0.01 -0.76 16 35 H 0.10 -0.49 7.38 -2.39 -0.02 -0.51 16 36 H 0.37 -2.13 6.84 -74.06 -0.51 -2.64 16 37 H -0.28 -1.31 6.81 99.48 0.68 -0.63 16 38 H -0.28 -1.33 7.11 99.48 0.71 -0.62 16 39 H 0.12 0.84 3.38 -2.91 -0.01 0.83 16 40 H 0.40 2.78 6.35 -92.71 -0.59 2.19 16 41 H 0.09 0.87 5.94 -2.39 -0.01 0.85 16 42 H 0.06 0.49 7.34 -2.39 -0.02 0.48 16 43 H 0.14 -0.23 5.99 -2.91 -0.02 -0.25 16 44 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 45 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 46 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 47 H 0.12 0.37 7.52 -2.91 -0.02 0.35 16 48 H 0.08 -0.11 8.10 -2.39 -0.02 -0.13 16 49 H 0.11 -0.34 8.09 -2.39 -0.02 -0.36 16 50 H 0.40 -2.44 9.12 -74.06 -0.68 -3.12 16 51 H 0.12 -0.40 6.28 -2.39 -0.01 -0.42 16 52 H 0.06 0.26 7.95 -2.39 -0.02 0.24 16 Total: 0.00 -19.43 406.08 -0.77 -20.20 By element: Atomic # 1 Polarization: -5.29 SS G_CDS: -0.77 Total: -6.07 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 3.96 Total: 7.20 kcal Atomic # 7 Polarization: -6.36 SS G_CDS: -2.40 Total: -8.76 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -3.65 Total: -14.85 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: 2.08 Total: 2.27 kcal Total: -19.43 -0.77 -20.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_9599494.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.650 kcal (2) G-P(sol) polarization free energy of solvation -19.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds