Wall clock time and date at job start Sat Mar 6 2021 23:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47037 * 2 1 4 4 C 1.50699 * 109.47099 * 240.00153 * 2 1 3 5 5 C 1.34238 * 126.50054 * 105.02214 * 4 2 1 6 6 N 1.36830 * 109.93677 * 179.97438 * 5 4 2 7 7 C 1.46501 * 125.06390 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46587 * 265.02388 * 7 6 5 9 9 O 1.21280 * 120.00406 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99740 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99844 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46793 * 182.11464 * 11 10 8 13 13 C 1.50705 * 112.90731 * 305.84351 * 12 11 10 14 14 C 1.38234 * 119.99600 * 101.77820 * 13 12 11 15 15 C 1.38233 * 120.00100 * 179.81277 * 14 13 12 16 16 C 1.38245 * 119.99854 * 0.41588 * 15 14 13 17 17 C 1.38237 * 119.99623 * 359.81187 * 16 15 14 18 18 C 1.38227 * 120.00411 * 282.05224 * 13 12 11 19 19 C 1.53781 * 113.61209 * 174.59856 * 12 11 10 20 20 C 1.53785 * 87.17219 * 270.83959 * 19 12 11 21 21 H 1.08997 * 113.61557 * 220.06452 * 20 19 12 22 22 O 1.42892 * 113.61580 * 89.15752 * 20 19 12 23 23 C 1.53776 * 113.61626 * 77.09964 * 12 11 10 24 24 C 1.37697 * 109.87892 * 0.22828 * 6 5 4 25 25 C 1.39075 * 133.51338 * 180.39608 * 24 6 5 26 26 C 1.37788 * 119.77978 * 179.65091 * 25 24 6 27 27 C 1.38789 * 120.66477 * 359.75616 * 26 25 24 28 28 C 1.36662 * 120.52789 * 359.97438 * 27 26 25 29 29 C 1.39592 * 119.76534 * 0.02562 * 28 27 26 30 30 H 0.96692 * 114.00272 * 59.99298 * 1 2 3 31 31 H 1.09004 * 109.47405 * 120.00056 * 2 1 3 32 32 H 1.48489 * 110.00350 * 298.68083 * 3 2 1 33 33 H 1.48506 * 110.00052 * 60.00579 * 3 2 1 34 34 H 1.07994 * 125.02811 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.47533 * 145.02231 * 7 6 5 36 36 H 1.08998 * 109.46824 * 25.01654 * 7 6 5 37 37 H 0.96996 * 119.99844 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.46901 * 62.11401 * 11 10 8 39 39 H 1.08996 * 109.47005 * 302.11209 * 11 10 8 40 40 H 1.07999 * 120.00414 * 359.97438 * 14 13 12 41 41 H 1.08001 * 120.00879 * 180.20565 * 15 14 13 42 42 H 1.07997 * 120.00127 * 179.79062 * 16 15 14 43 43 H 1.08001 * 120.00125 * 179.97438 * 17 16 15 44 44 H 1.08003 * 119.99672 * 359.97438 * 18 13 12 45 45 H 1.08994 * 113.61635 * 25.42982 * 19 12 11 46 46 H 1.09000 * 113.61690 * 156.25030 * 19 12 11 47 47 H 0.96695 * 114.00149 * 180.02562 * 22 20 19 48 48 H 1.09003 * 113.61339 * 203.66610 * 23 12 11 49 49 H 1.09001 * 113.61348 * 334.47851 * 23 12 11 50 50 H 1.08003 * 120.11495 * 359.40557 * 25 24 6 51 51 H 1.08000 * 119.66829 * 179.73643 * 26 25 24 52 52 H 1.08003 * 119.73568 * 180.02562 * 27 26 25 53 53 H 1.08006 * 120.11497 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.4612 -0.1376 -2.3228 6 7 2.8036 -1.0990 -3.2342 7 6 3.4083 -0.8404 -4.5433 8 6 2.3285 -0.7839 -5.5931 9 8 1.1682 -0.9444 -5.2788 10 7 2.6523 -0.5551 -6.8812 11 6 1.6026 -0.5008 -7.9018 12 6 2.2385 -0.2825 -9.2762 13 6 3.1406 0.9239 -9.3202 14 6 4.5124 0.7637 -9.2611 15 6 5.3401 1.8699 -9.3054 16 6 4.7957 3.1371 -9.4002 17 6 3.4237 3.2976 -9.4546 18 6 2.5963 2.1910 -9.4141 19 6 1.2317 -0.3415 -10.4371 20 6 1.5030 -1.8541 -10.4950 21 1 1.5626 -2.2485 -11.5094 22 8 0.6451 -2.6223 -9.6491 23 6 2.8761 -1.5504 -9.8684 24 6 2.4899 -2.3454 -2.7403 25 6 2.6295 -3.6361 -3.2391 26 6 2.2151 -4.7107 -2.4827 27 6 1.6633 -4.5193 -1.2236 28 6 1.5219 -3.2600 -0.7118 29 6 1.9350 -2.1570 -1.4610 30 1 -0.3933 0.4417 -0.7649 31 1 1.7924 -0.5138 0.8900 32 1 1.5879 2.4586 -1.2241 33 1 1.5616 2.4679 1.2086 34 1 2.5971 0.9248 -2.4616 35 1 4.1083 -1.6403 -4.7847 36 1 3.9392 0.1112 -4.5166 37 1 3.5802 -0.4264 -7.1325 38 1 0.9233 0.3225 -7.6808 39 1 1.0481 -1.4391 -7.9029 40 1 4.9376 -0.2260 -9.1829 41 1 6.4119 1.7446 -9.2625 42 1 5.4421 4.0016 -9.4314 43 1 2.9983 4.2876 -9.5283 44 1 1.5244 2.3164 -9.4563 45 1 0.2121 -0.0917 -10.1439 46 1 1.5597 0.1953 -11.3273 47 1 0.8111 -3.5744 -9.6809 48 1 3.6543 -1.3453 -10.6035 49 1 3.1853 -2.2759 -9.1159 50 1 3.0576 -3.7954 -4.2177 51 1 2.3204 -5.7119 -2.8736 52 1 1.3439 -5.3724 -0.6434 53 1 1.0920 -3.1188 0.2689 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_9818708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:27:17 Heat of formation + Delta-G solvation = 14.599302 kcal Electronic energy + Delta-G solvation = -36951.767093 eV Core-core repulsion = 32335.667552 eV Total energy + Delta-G solvation = -4616.099541 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.177 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.56246 -41.86879 -40.37020 -39.29376 -38.16502 -37.73410 -36.45124 -35.12859 -34.09998 -31.87503 -31.77782 -31.50997 -30.25436 -29.65082 -27.97173 -26.96141 -25.74282 -24.60681 -23.71839 -23.20482 -22.72004 -22.34421 -21.65789 -20.72512 -20.03899 -18.68767 -18.58889 -18.40250 -17.80516 -17.69560 -17.40444 -16.75675 -16.57296 -16.40941 -16.22154 -16.10494 -15.88883 -15.71326 -15.42894 -15.26337 -15.18189 -14.80753 -14.74008 -14.54166 -14.43934 -14.24610 -14.12721 -14.10633 -13.70596 -13.60929 -13.26362 -13.09912 -13.03499 -12.74135 -12.72909 -12.57484 -12.40119 -12.21565 -12.01631 -11.90720 -11.75360 -11.71525 -11.21882 -11.17952 -10.72833 -10.55865 -10.47196 -10.18058 -9.82513 -9.63134 -9.16489 -8.64464 -4.91590 0.13747 0.41780 0.48710 0.64033 1.32865 1.40253 1.42637 1.60122 1.68830 1.97617 2.16294 2.83276 2.94767 3.11179 3.36894 3.45073 3.49121 3.61212 3.65420 3.65759 3.71719 3.74240 3.82783 3.98894 4.02521 4.10797 4.13010 4.16038 4.21703 4.28994 4.29765 4.40988 4.48540 4.52026 4.58794 4.62788 4.70331 4.71179 4.72983 4.78336 4.80539 4.84327 4.89481 4.97102 5.07824 5.12355 5.13459 5.15717 5.19081 5.30186 5.50922 5.59626 5.65110 5.66416 5.66595 5.73630 5.74860 6.10093 6.16464 6.22632 6.41915 6.51866 6.83906 7.08115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.055 4.055 3 Si 0.785 3.215 4 C -0.213 4.213 5 C 0.071 3.929 6 N -0.465 5.465 7 C 0.089 3.911 8 C 0.489 3.511 9 O -0.574 6.574 10 N -0.705 5.705 11 C 0.151 3.849 12 C -0.043 4.043 13 C -0.072 4.072 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.122 4.122 20 C 0.076 3.924 21 H 0.086 0.914 22 O -0.569 6.569 23 C -0.148 4.148 24 C 0.092 3.908 25 C -0.134 4.134 26 C -0.106 4.106 27 C -0.153 4.153 28 C -0.088 4.088 29 C -0.116 4.116 30 H 0.381 0.619 31 H 0.112 0.888 32 H -0.277 1.277 33 H -0.301 1.301 34 H 0.194 0.806 35 H 0.147 0.853 36 H 0.160 0.840 37 H 0.414 0.586 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.396 0.604 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.133 0.867 51 H 0.147 0.853 52 H 0.137 0.863 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.398 0.492 -7.069 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.163 4.163 3 Si 0.689 3.311 4 C -0.221 4.221 5 C -0.054 4.054 6 N -0.148 5.148 7 C -0.036 4.036 8 C 0.274 3.726 9 O -0.452 6.452 10 N -0.359 5.359 11 C 0.027 3.973 12 C -0.043 4.043 13 C -0.072 4.072 14 C -0.138 4.138 15 C -0.137 4.137 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.145 4.145 19 C -0.159 4.159 20 C 0.017 3.983 21 H 0.104 0.896 22 O -0.378 6.378 23 C -0.185 4.185 24 C -0.013 4.013 25 C -0.154 4.154 26 C -0.125 4.125 27 C -0.172 4.172 28 C -0.106 4.106 29 C -0.120 4.120 30 H 0.229 0.771 31 H 0.130 0.870 32 H -0.204 1.204 33 H -0.229 1.229 34 H 0.210 0.790 35 H 0.165 0.835 36 H 0.178 0.822 37 H 0.251 0.749 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.132 0.868 45 H 0.084 0.916 46 H 0.129 0.871 47 H 0.247 0.753 48 H 0.128 0.872 49 H 0.101 0.899 50 H 0.151 0.849 51 H 0.164 0.836 52 H 0.155 0.845 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.358 1.550 -6.475 11.485 hybrid contribution -1.226 -0.445 -0.761 1.510 sum 8.132 1.105 -7.236 10.941 Atomic orbital electron populations 1.86549 1.19525 1.80554 1.49632 1.24709 0.82518 1.11967 0.97145 0.94201 0.89623 0.70605 0.76710 1.20700 1.10745 0.91944 0.98686 1.21987 0.99793 0.95010 0.88635 1.43410 1.53202 1.03954 1.14189 1.21960 0.93696 1.09065 0.78832 1.21501 0.90558 0.76198 0.84314 1.90802 1.22444 1.50309 1.81691 1.45750 1.11679 1.72227 1.06200 1.21035 0.89389 1.01854 0.84988 1.20767 0.96161 0.93875 0.93500 1.19611 0.94046 0.93277 1.00311 1.21245 0.92143 0.99890 1.00480 1.21456 1.00955 0.92276 0.98984 1.21453 0.95145 0.98475 0.99913 1.21358 0.94298 0.99049 0.99991 1.21095 0.99911 0.92656 1.00789 1.23167 0.99156 0.95371 0.98256 1.22767 0.89871 0.92022 0.93674 0.89631 1.86449 1.60169 1.23953 1.67237 1.23764 0.97753 0.95887 1.01110 1.18411 1.01701 0.86948 0.94229 1.20249 1.05080 0.89075 1.01045 1.21136 0.98058 0.99023 0.94268 1.20926 1.02278 0.97029 0.97003 1.20459 0.98886 0.91676 0.99590 1.19333 1.03957 0.93770 0.94948 0.77084 0.87014 1.20358 1.22907 0.78964 0.83546 0.82238 0.74889 0.93950 0.90360 0.83874 0.84050 0.85016 0.85631 0.86774 0.91615 0.87111 0.75347 0.87200 0.89897 0.84945 0.83572 0.84496 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.36 12.88 -148.98 -1.92 -7.28 16 2 C -0.06 -0.28 3.06 71.24 0.22 -0.07 16 3 Si 0.78 0.10 30.82 68.60 2.11 2.22 16 4 C -0.21 -1.48 5.58 -18.63 -0.10 -1.59 16 5 C 0.07 0.22 9.89 83.00 0.82 1.04 16 6 N -0.47 -1.58 2.27 -519.99 -1.18 -2.76 16 7 C 0.09 -0.42 6.48 85.63 0.56 0.13 16 8 C 0.49 1.20 7.90 87.66 0.69 1.90 16 9 O -0.57 -8.35 16.42 -3.03 -0.05 -8.40 16 10 N -0.71 1.78 5.35 -463.05 -2.48 -0.69 16 11 C 0.15 0.22 4.94 86.38 0.43 0.65 16 12 C -0.04 0.16 0.73 -52.40 -0.04 0.13 16 13 C -0.07 0.27 4.24 -19.87 -0.08 0.19 16 14 C -0.12 0.80 8.08 22.27 0.18 0.98 16 15 C -0.12 0.68 10.05 22.27 0.22 0.91 16 16 C -0.13 0.45 10.05 22.27 0.22 0.67 16 17 C -0.13 0.19 10.05 22.27 0.22 0.42 16 18 C -0.13 0.12 9.38 22.27 0.21 0.33 16 19 C -0.12 0.33 6.67 31.12 0.21 0.54 16 20 C 0.08 -0.34 5.29 31.18 0.16 -0.18 16 21 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 22 O -0.57 0.50 11.53 -148.98 -1.72 -1.22 16 23 C -0.15 1.09 6.05 31.18 0.19 1.28 16 24 C 0.09 0.77 6.80 39.03 0.27 1.03 16 25 C -0.13 -0.79 9.99 22.36 0.22 -0.57 16 26 C -0.11 -0.56 10.01 22.30 0.22 -0.33 16 27 C -0.15 -1.08 9.97 22.03 0.22 -0.86 16 28 C -0.09 -0.89 10.05 22.23 0.22 -0.66 16 29 C -0.12 -1.25 6.35 -20.20 -0.13 -1.38 16 30 H 0.38 1.91 8.70 -74.06 -0.64 1.27 16 31 H 0.11 0.50 7.96 -2.38 -0.02 0.48 16 32 H -0.28 -0.76 7.00 99.48 0.70 -0.06 16 33 H -0.30 -2.28 7.11 99.48 0.71 -1.57 16 34 H 0.19 -0.61 6.27 -2.91 -0.02 -0.62 16 35 H 0.15 -1.54 8.14 -2.39 -0.02 -1.56 16 36 H 0.16 -1.98 8.12 -2.39 -0.02 -1.99 16 37 H 0.41 -3.50 7.11 -92.71 -0.66 -4.16 16 38 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.08 0.48 5.96 -2.39 -0.01 0.47 16 40 H 0.14 -1.60 7.08 -2.91 -0.02 -1.63 16 41 H 0.14 -1.36 8.06 -2.91 -0.02 -1.38 16 42 H 0.13 -0.79 8.06 -2.91 -0.02 -0.82 16 43 H 0.13 -0.40 8.06 -2.91 -0.02 -0.43 16 44 H 0.11 -0.07 8.01 -2.91 -0.02 -0.09 16 45 H 0.07 0.06 8.10 -2.39 -0.02 0.04 16 46 H 0.11 -0.51 8.09 -2.39 -0.02 -0.53 16 47 H 0.40 -3.26 9.12 -74.06 -0.68 -3.93 16 48 H 0.11 -1.06 7.50 -2.39 -0.02 -1.08 16 49 H 0.08 -0.65 8.10 -2.39 -0.02 -0.67 16 50 H 0.13 0.14 8.06 -2.91 -0.02 0.11 16 51 H 0.15 -0.02 8.06 -2.91 -0.02 -0.05 16 52 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 53 H 0.12 1.08 8.06 -2.91 -0.02 1.05 16 Total: 0.00 -29.66 435.91 -1.08 -30.74 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -0.99 Total: -17.18 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.13 Total: 4.56 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: -3.66 Total: -3.45 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -3.69 Total: -16.89 kcal Atomic # 14 Polarization: 0.10 SS G_CDS: 2.11 Total: 2.22 kcal Total: -29.66 -1.08 -30.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_9818708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.344 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds