Wall clock time and date at job start Sat Mar 6 2021 23:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36768 * 125.80653 * 2 1 4 4 C 1.47264 * 126.93858 * 0.02562 * 3 2 1 5 5 O 1.21627 * 119.99852 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99767 * 179.97438 * 4 3 2 7 7 C 1.46493 * 119.99682 * 180.27496 * 6 4 3 8 8 C 1.53001 * 109.46876 * 174.55120 * 7 6 4 9 9 C 1.50693 * 112.85334 * 73.10167 * 8 7 6 10 10 C 1.38239 * 120.00004 * 245.77531 * 9 8 7 11 11 C 1.38238 * 120.00018 * 179.78458 * 10 9 8 12 12 C 1.38232 * 119.99792 * 0.44126 * 11 10 9 13 13 C 1.38234 * 120.00106 * 359.80848 * 12 11 10 14 14 C 1.38235 * 120.00390 * 359.97438 * 13 12 11 15 15 C 1.53784 * 113.61375 * 301.89752 * 8 7 6 16 16 C 1.53776 * 87.08616 * 270.88759 * 15 8 7 17 17 H 1.08997 * 113.61060 * 220.02124 * 16 15 8 18 18 O 1.42894 * 113.61640 * 89.20178 * 16 15 8 19 19 C 1.53788 * 87.08153 * 334.56669 * 16 15 8 20 20 C 1.46688 * 106.11866 * 180.28359 * 3 2 1 21 21 C 1.34492 * 106.32742 * 359.56892 * 20 3 2 22 22 C 1.50703 * 125.56748 * 180.14467 * 21 20 3 23 23 O 1.42899 * 109.46879 * 120.33786 * 22 21 20 24 24 Si 1.86298 * 109.47197 * 0.33862 * 22 21 20 25 25 N 1.34666 * 125.79992 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.46675 * 89.99976 * 1 2 3 27 27 H 1.08996 * 109.46902 * 209.99926 * 1 2 3 28 28 H 1.08999 * 109.46530 * 330.00354 * 1 2 3 29 29 H 0.97003 * 120.00036 * 0.02562 * 6 4 3 30 30 H 1.09001 * 109.47749 * 294.54952 * 7 6 4 31 31 H 1.09005 * 109.47306 * 54.55072 * 7 6 4 32 32 H 1.07996 * 119.99582 * 359.97438 * 10 9 8 33 33 H 1.07991 * 119.99702 * 180.27448 * 11 10 9 34 34 H 1.07999 * 120.00084 * 179.83631 * 12 11 10 35 35 H 1.08001 * 120.00276 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.00345 * 179.97438 * 14 13 12 37 37 H 1.09001 * 113.61182 * 25.43846 * 15 8 7 38 38 H 1.09006 * 113.61354 * 156.24954 * 15 8 7 39 39 H 0.96696 * 114.00547 * 180.02562 * 18 16 15 40 40 H 1.09000 * 113.61185 * 270.88458 * 19 16 15 41 41 H 1.08994 * 113.61314 * 139.98144 * 19 16 15 42 42 H 1.07993 * 126.83685 * 179.74155 * 20 3 2 43 43 H 1.08991 * 109.47199 * 240.33613 * 22 21 20 44 44 H 0.96704 * 114.00467 * 299.99613 * 23 22 21 45 45 H 1.48500 * 110.00016 * 179.97438 * 24 22 21 46 46 H 1.48497 * 110.00223 * 301.31914 * 24 22 21 47 47 H 0.97006 * 124.84794 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8704 2.5155 0.0005 5 8 0.6841 2.7838 0.0015 6 7 2.7852 3.5053 0.0010 7 6 2.3507 4.9043 0.0076 8 6 3.5713 5.8168 0.1437 9 6 4.3949 5.8843 -1.1164 10 6 5.6803 5.3759 -1.1301 11 6 6.4343 5.4339 -2.2873 12 6 5.9061 6.0084 -3.4283 13 6 4.6225 6.5213 -3.4132 14 6 3.8669 6.4594 -2.2573 15 6 4.4026 5.5489 1.4094 16 6 3.4966 6.5651 2.1245 17 1 4.0323 7.2194 2.8122 18 8 2.3309 5.9808 2.7090 19 6 3.2463 7.1949 0.7440 20 6 3.6883 0.6150 -0.0070 21 6 3.6095 -0.7276 -0.0008 22 6 4.7819 -1.6745 -0.0015 23 8 4.7295 -2.4981 1.1651 24 14 6.3686 -0.6983 -0.0017 25 7 2.2948 -1.0922 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5138 29 1 3.7313 3.2913 0.0006 30 1 1.8319 5.1281 -0.9245 31 1 1.6766 5.0714 0.8477 32 1 6.0944 4.9308 -0.2375 33 1 7.4369 5.0328 -2.2991 34 1 6.4960 6.0560 -4.3316 35 1 4.2097 6.9698 -4.3047 36 1 2.8643 6.8606 -2.2454 37 1 4.3035 4.5322 1.7898 38 1 5.4408 5.8703 1.3261 39 1 1.7569 6.6150 3.1598 40 1 3.9680 7.9676 0.4793 41 1 2.2138 7.5070 0.5872 42 1 4.5891 1.2107 -0.0128 43 1 4.7414 -2.3023 -0.8915 44 1 4.7614 -2.0051 1.9965 45 1 7.5325 -1.6207 -0.0017 46 1 6.4208 0.1860 -1.1935 47 1 1.9733 -2.0075 -0.0013 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_9865296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:27:21 Heat of formation + Delta-G solvation = -20.378647 kcal Electronic energy + Delta-G solvation = -30562.360318 eV Core-core repulsion = 26484.960060 eV Total energy + Delta-G solvation = -4077.400259 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.48708 -41.74836 -39.90144 -39.20765 -37.72667 -36.32125 -34.92442 -32.90006 -32.24304 -31.83967 -31.66246 -29.23817 -28.40096 -26.88495 -25.55406 -24.64432 -23.24784 -22.93844 -22.25101 -21.46573 -20.78492 -19.65439 -19.08041 -18.55030 -17.65124 -17.26657 -17.09109 -16.74907 -16.54077 -16.38143 -15.89318 -15.75813 -15.55637 -15.30890 -15.24151 -15.00370 -14.72781 -14.54521 -14.33738 -14.12049 -14.04420 -13.95078 -13.84747 -13.45989 -13.39834 -13.11807 -12.99526 -12.93656 -12.63958 -12.17379 -12.14071 -12.06274 -11.82652 -11.54901 -11.17493 -10.88351 -10.67286 -10.63742 -10.09617 -9.81533 -9.77166 -9.57261 -9.17794 -4.95262 0.46214 0.52495 0.70403 1.16902 1.27122 1.70197 1.91792 2.13785 2.50015 2.53934 2.87278 3.23301 3.44643 3.47991 3.54359 3.59726 3.79460 3.83271 3.87040 3.97480 4.15825 4.17477 4.18360 4.19352 4.30773 4.38960 4.47832 4.50679 4.59592 4.65504 4.67985 4.71653 4.73265 4.81080 4.90092 4.91315 4.97234 5.07158 5.13056 5.16018 5.19026 5.25908 5.27061 5.53217 5.62292 5.65564 5.66787 5.71925 5.86118 6.14020 6.43815 6.67080 6.68237 6.93775 7.36733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.109 3.891 3 C -0.258 4.258 4 C 0.586 3.414 5 O -0.589 6.589 6 N -0.707 5.707 7 C 0.152 3.848 8 C -0.047 4.047 9 C -0.070 4.070 10 C -0.122 4.122 11 C -0.124 4.124 12 C -0.137 4.137 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.124 4.124 16 C 0.080 3.920 17 H 0.087 0.913 18 O -0.566 6.566 19 C -0.148 4.148 20 C -0.160 4.160 21 C -0.012 4.012 22 C -0.054 4.054 23 O -0.557 6.557 24 Si 0.801 3.199 25 N -0.529 5.529 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.407 0.593 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.395 0.605 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.169 0.831 43 H 0.110 0.890 44 H 0.398 0.602 45 H -0.293 1.293 46 H -0.278 1.278 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 1.719 2.940 5.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.011 4.011 3 C -0.267 4.267 4 C 0.376 3.624 5 O -0.472 6.472 6 N -0.358 5.358 7 C 0.029 3.971 8 C -0.048 4.048 9 C -0.070 4.070 10 C -0.140 4.140 11 C -0.142 4.142 12 C -0.155 4.155 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.161 4.161 16 C 0.021 3.979 17 H 0.105 0.895 18 O -0.375 6.375 19 C -0.186 4.186 20 C -0.184 4.184 21 C -0.122 4.122 22 C -0.164 4.164 23 O -0.365 6.365 24 Si 0.704 3.296 25 N -0.125 5.125 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.243 0.757 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.245 0.755 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.186 0.814 43 H 0.127 0.873 44 H 0.248 0.752 45 H -0.221 1.221 46 H -0.205 1.205 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 4.911 0.956 1.837 5.330 hybrid contribution -0.805 -0.227 -0.605 1.032 sum 4.106 0.729 1.232 4.349 Atomic orbital electron populations 1.20566 0.86438 1.04461 1.03690 1.20574 0.94269 0.85819 1.00406 1.20104 0.94122 0.91592 1.20927 1.17581 0.84968 0.84921 0.74933 1.90717 1.18193 1.85028 1.53230 1.45510 1.09868 1.05462 1.74939 1.21061 0.95385 0.79333 1.01363 1.20822 0.94592 0.97283 0.92066 1.19685 0.94704 0.98409 0.94214 1.21342 0.93611 0.99884 0.99138 1.21451 1.00751 0.99070 0.92961 1.21426 0.95875 0.98868 0.99285 1.21355 0.95044 1.00088 0.98418 1.21115 1.00040 1.00224 0.93140 1.23294 0.98981 1.00914 0.92945 1.22695 0.87259 0.95177 0.92783 0.89509 1.86480 1.36481 1.39784 1.74719 1.23677 1.03109 0.95097 0.96688 1.21960 0.95845 0.92840 1.07725 1.20972 0.85218 0.94887 1.11119 1.25048 1.03020 0.97029 0.91256 1.86465 1.96934 1.36621 1.16446 0.93178 0.71085 0.78777 0.86514 1.41571 1.05392 1.08871 1.56665 0.90247 0.89429 0.89941 0.75672 0.93635 0.90241 0.83612 0.84353 0.85199 0.85522 0.86381 0.90276 0.86185 0.75528 0.87934 0.90703 0.81414 0.87263 0.75200 1.22096 1.20468 0.73353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 9.88 71.24 0.70 0.38 16 2 C 0.11 0.53 7.17 41.78 0.30 0.83 16 3 C -0.26 -1.75 6.29 -19.04 -0.12 -1.87 16 4 C 0.59 6.21 7.81 86.62 0.68 6.89 16 5 O -0.59 -10.34 14.81 -4.12 -0.06 -10.40 16 6 N -0.71 -3.43 5.05 -466.52 -2.36 -5.79 16 7 C 0.15 0.73 4.87 86.38 0.42 1.15 16 8 C -0.05 0.06 0.64 -52.40 -0.03 0.02 16 9 C -0.07 -0.01 4.85 -19.87 -0.10 -0.10 16 10 C -0.12 0.23 9.05 22.27 0.20 0.44 16 11 C -0.12 0.11 10.05 22.27 0.22 0.33 16 12 C -0.14 -0.13 10.05 22.27 0.22 0.09 16 13 C -0.13 -0.29 10.05 22.27 0.22 -0.07 16 14 C -0.13 -0.31 9.23 22.27 0.21 -0.10 16 15 C -0.12 0.52 5.89 31.12 0.18 0.70 16 16 C 0.08 -0.30 5.27 31.12 0.16 -0.13 16 17 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 18 O -0.57 0.14 11.58 -148.98 -1.73 -1.59 16 19 C -0.15 0.46 6.93 31.13 0.22 0.68 16 20 C -0.16 -0.14 9.03 23.62 0.21 0.07 16 21 C -0.01 0.00 6.48 40.99 0.27 0.27 16 22 C -0.05 0.15 3.08 71.24 0.22 0.37 16 23 O -0.56 1.36 12.88 -148.98 -1.92 -0.56 16 24 Si 0.80 -3.84 30.56 68.60 2.10 -1.74 16 25 N -0.53 -0.18 5.90 -171.06 -1.01 -1.19 16 26 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.09 -0.15 8.14 -2.39 -0.02 -0.16 16 28 H 0.08 0.69 6.46 -2.39 -0.02 0.68 16 29 H 0.41 0.09 7.09 -92.71 -0.66 -0.56 16 30 H 0.05 0.37 7.80 -2.39 -0.02 0.35 16 31 H 0.08 0.66 6.05 -2.38 -0.01 0.64 16 32 H 0.15 -1.02 6.41 -2.91 -0.02 -1.03 16 33 H 0.14 -0.66 8.06 -2.91 -0.02 -0.69 16 34 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 35 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 36 H 0.12 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.08 -0.21 7.41 -2.39 -0.02 -0.23 16 38 H 0.12 -0.95 6.79 -2.38 -0.02 -0.96 16 39 H 0.39 -2.90 9.12 -74.06 -0.68 -3.57 16 40 H 0.10 -0.45 8.10 -2.39 -0.02 -0.47 16 41 H 0.07 -0.16 8.10 -2.39 -0.02 -0.18 16 42 H 0.17 -0.77 5.86 -2.91 -0.02 -0.78 16 43 H 0.11 -0.22 7.96 -2.39 -0.02 -0.24 16 44 H 0.40 -3.85 8.70 -74.05 -0.64 -4.50 16 45 H -0.29 -0.64 7.11 99.48 0.71 0.06 16 46 H -0.28 0.05 7.11 99.48 0.71 0.76 16 47 H 0.43 -1.60 8.96 -92.70 -0.83 -2.43 16 Total: 0.00 -22.64 383.06 -2.51 -25.15 By element: Atomic # 1 Polarization: -12.09 SS G_CDS: -1.72 Total: -13.82 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 4.19 Total: 9.95 kcal Atomic # 7 Polarization: -3.62 SS G_CDS: -3.37 Total: -6.98 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -3.71 Total: -12.55 kcal Atomic # 14 Polarization: -3.84 SS G_CDS: 2.10 Total: -1.74 kcal Total: -22.64 -2.51 -25.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_9865296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.767 kcal (2) G-P(sol) polarization free energy of solvation -22.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds