Wall clock time and date at job start Sat Mar 6 2021 21:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46995 * 2 1 4 4 C 1.50694 * 109.47167 * 239.99952 * 2 1 3 5 5 C 1.36449 * 120.29767 * 239.97269 * 4 2 1 6 6 C 1.40096 * 119.25698 * 179.73293 * 5 4 2 7 7 C 1.40850 * 132.86209 * 179.65681 * 6 5 4 8 8 C 1.46561 * 126.58378 * 0.67412 * 7 6 5 9 9 O 1.21721 * 119.99667 * 359.70842 * 8 7 6 10 10 N 1.34776 * 120.00064 * 179.71494 * 8 7 6 11 11 C 1.46503 * 119.99784 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85279 * 23.80346 * 11 10 8 13 13 C 1.53787 * 113.61181 * 154.99519 * 11 10 8 14 14 C 1.53784 * 87.07923 * 89.11654 * 13 11 10 15 15 H 1.09000 * 113.61578 * 270.88484 * 14 13 11 16 16 C 1.52997 * 113.61330 * 139.97966 * 14 13 11 17 17 O 1.42898 * 109.47183 * 174.99947 * 16 14 13 18 18 C 1.53778 * 113.61472 * 252.49040 * 11 10 8 19 19 C 1.40553 * 106.83637 * 180.41060 * 7 6 5 20 20 N 1.30742 * 108.74781 * 0.24041 * 19 7 6 21 21 N 1.36572 * 120.22788 * 0.54383 * 6 5 4 22 22 C 1.36249 * 120.08093 * 359.47836 * 21 6 5 23 23 C 1.35186 * 120.70440 * 0.25084 * 22 21 6 24 24 H 0.96697 * 114.00776 * 60.00077 * 1 2 3 25 25 H 1.09001 * 109.47074 * 119.99761 * 2 1 3 26 26 H 1.48497 * 110.00122 * 59.99743 * 3 2 1 27 27 H 1.48494 * 110.00274 * 181.32236 * 3 2 1 28 28 H 1.08005 * 120.36887 * 0.04582 * 5 4 2 29 29 H 0.96997 * 120.00437 * 359.97438 * 10 8 7 30 30 H 1.09004 * 113.61202 * 203.66406 * 13 11 10 31 31 H 1.08994 * 113.61447 * 334.56838 * 13 11 10 32 32 H 1.09004 * 109.47170 * 294.99762 * 16 14 13 33 33 H 1.08995 * 109.47328 * 55.00254 * 16 14 13 34 34 H 0.96700 * 114.00287 * 179.97438 * 17 16 14 35 35 H 1.08999 * 113.61111 * 25.43782 * 18 11 10 36 36 H 1.08999 * 113.61280 * 156.25165 * 18 11 10 37 37 H 1.08005 * 125.63174 * 180.22286 * 19 7 6 38 38 H 1.07997 * 119.64860 * 180.27746 * 22 21 6 39 39 H 1.07997 * 119.83737 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7166 -1.8200 -1.1123 6 6 3.1669 -2.4666 -2.2706 7 6 3.9750 -3.6006 -2.4822 8 6 4.5755 -4.4502 -1.4499 9 8 4.3966 -4.1964 -0.2730 10 7 5.3260 -5.5123 -1.8038 11 6 5.9267 -6.3612 -0.7718 12 1 5.3960 -6.3116 0.1789 13 6 6.2116 -7.7967 -1.2441 14 6 7.5886 -7.2885 -1.7030 15 1 7.5960 -6.9104 -2.7253 16 6 8.7286 -8.2697 -1.4226 17 8 9.9411 -7.7644 -1.9851 18 6 7.4488 -6.1865 -0.6397 19 6 4.0900 -3.7648 -3.8734 20 7 3.4171 -2.8132 -4.4658 21 7 2.8310 -1.9828 -3.5028 22 6 2.0469 -0.8738 -3.6105 23 6 1.5965 -0.2369 -2.5064 24 1 -0.3934 0.4416 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4679 1.2084 27 1 3.5345 1.7704 -0.0322 28 1 2.9838 -2.1984 -0.1366 29 1 5.4683 -5.7147 -2.7417 30 1 6.2623 -8.5216 -0.4316 31 1 5.5709 -8.1220 -2.0636 32 1 8.8494 -8.3882 -0.3458 33 1 8.4952 -9.2355 -1.8706 34 1 10.7081 -8.3364 -1.8450 35 1 7.8068 -5.2118 -0.9713 36 1 7.8375 -6.4698 0.3384 37 1 4.6432 -4.5477 -4.3710 38 1 1.7818 -0.4998 -4.5884 39 1 0.9754 0.6407 -2.6081 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13270474_11618758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:08 Heat of formation + Delta-G solvation = 17.253890 kcal Electronic energy + Delta-G solvation = -24192.936360 eV Core-core repulsion = 20491.043438 eV Total energy + Delta-G solvation = -3701.892922 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.30401 -41.10982 -39.56756 -39.07931 -37.27997 -37.22490 -34.33930 -34.03921 -32.10299 -30.46222 -28.78317 -27.24032 -26.72714 -25.13923 -24.11075 -23.27729 -22.92374 -21.35171 -20.23847 -19.13415 -18.55910 -18.26218 -17.90738 -17.51828 -17.00013 -16.95659 -16.53773 -16.13428 -15.95553 -15.76051 -15.44726 -15.39637 -15.09276 -14.62967 -14.44191 -14.22598 -14.03093 -13.58367 -13.52341 -13.42707 -13.19238 -13.03474 -12.42648 -12.17283 -11.96753 -11.84997 -11.63294 -11.51396 -11.40766 -10.85113 -10.82129 -10.76569 -10.33596 -9.96887 -8.77800 -5.18758 -0.56957 -0.15793 0.99383 1.06305 1.12229 1.57367 1.87256 2.05307 2.22751 2.58707 3.04875 3.12339 3.16574 3.32810 3.43408 3.46709 3.62969 3.64159 3.83837 3.85085 3.97110 4.06609 4.11643 4.22745 4.32181 4.35474 4.47707 4.49094 4.54424 4.67479 4.69813 4.71318 4.88221 5.05421 5.08152 5.09319 5.13819 5.21711 5.25978 5.63118 5.67366 6.30236 6.37227 6.62130 6.66286 7.40285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.069 4.069 3 Si 0.699 3.301 4 C -0.068 4.068 5 C -0.096 4.096 6 C 0.170 3.830 7 C -0.317 4.317 8 C 0.604 3.396 9 O -0.548 6.548 10 N -0.711 5.711 11 C 0.124 3.876 12 H 0.106 0.894 13 C -0.139 4.139 14 C -0.112 4.112 15 H 0.097 0.903 16 C 0.084 3.916 17 O -0.574 6.574 18 C -0.144 4.144 19 C 0.121 3.879 20 N -0.312 5.312 21 N -0.267 5.267 22 C 0.122 3.878 23 C -0.157 4.157 24 H 0.378 0.622 25 H 0.123 0.877 26 H -0.247 1.247 27 H -0.254 1.254 28 H 0.161 0.839 29 H 0.399 0.601 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.380 0.620 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.199 0.801 38 H 0.180 0.820 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 0.534 -3.189 3.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.178 4.178 3 Si 0.598 3.402 4 C -0.074 4.074 5 C -0.116 4.116 6 C 0.049 3.951 7 C -0.331 4.331 8 C 0.394 3.606 9 O -0.427 6.427 10 N -0.362 5.362 11 C 0.018 3.982 12 H 0.124 0.876 13 C -0.177 4.177 14 C -0.130 4.130 15 H 0.115 0.885 16 C 0.006 3.994 17 O -0.380 6.380 18 C -0.183 4.183 19 C -0.060 4.060 20 N -0.132 5.132 21 N -0.031 5.031 22 C -0.004 4.004 23 C -0.178 4.178 24 H 0.226 0.774 25 H 0.140 0.860 26 H -0.171 1.171 27 H -0.179 1.179 28 H 0.179 0.821 29 H 0.233 0.767 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.227 0.773 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.215 0.785 38 H 0.197 0.803 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.173 1.893 -2.775 3.558 hybrid contribution 0.881 -1.697 0.445 1.963 sum -0.292 0.195 -2.330 2.356 Atomic orbital electron populations 1.86607 1.16309 1.81661 1.49088 1.25164 0.85587 1.10341 0.96719 0.95013 0.81500 0.75958 0.87748 1.20507 0.95914 0.95005 0.95937 1.20710 0.98304 0.94473 0.98115 1.19255 0.95562 0.94055 0.86207 1.19597 1.16057 1.03933 0.93562 1.16818 0.77110 0.79407 0.87315 1.90783 1.61688 1.71644 1.18590 1.45348 1.52433 1.28855 1.09557 1.21771 0.93951 0.89785 0.92696 0.87596 1.23346 0.95850 0.96383 1.02115 1.22606 0.93330 0.96667 1.00392 0.88516 1.22199 0.84508 0.95873 0.96813 1.86492 1.19030 1.51684 1.80759 1.23485 0.95795 0.99602 0.99408 1.24068 0.94274 0.95756 0.91937 1.77640 1.18568 1.06341 1.10687 1.46099 1.32221 1.19003 1.05762 1.21604 0.91767 0.85087 1.01940 1.20719 1.04214 1.02668 0.90223 0.77407 0.85983 1.17058 1.17864 0.82138 0.76685 0.88393 0.90370 0.93367 0.93508 0.77286 0.90830 0.89067 0.78490 0.80325 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.55 12.87 -35.23 -0.45 0.10 16 2 C -0.07 0.08 2.84 36.00 0.10 0.19 16 3 Si 0.70 -1.51 31.96 -169.99 -5.43 -6.94 16 4 C -0.07 0.04 4.53 -104.55 -0.47 -0.43 16 5 C -0.10 -0.22 9.35 -39.53 -0.37 -0.59 16 6 C 0.17 0.55 6.76 -84.07 -0.57 -0.01 16 7 C -0.32 -0.97 6.17 -104.68 -0.65 -1.61 16 8 C 0.60 2.29 7.78 -12.91 -0.10 2.19 16 9 O -0.55 -3.87 15.30 5.17 0.08 -3.79 16 10 N -0.71 -0.46 5.25 -54.35 -0.29 -0.74 16 11 C 0.12 0.06 4.32 -67.12 -0.29 -0.23 16 12 H 0.11 0.22 7.46 -51.93 -0.39 -0.17 16 13 C -0.14 0.24 7.39 -25.91 -0.19 0.05 16 14 C -0.11 0.08 3.89 -89.81 -0.35 -0.27 16 15 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 16 C 0.08 -0.07 6.88 37.16 0.26 0.19 16 17 O -0.57 -0.48 13.66 -35.23 -0.48 -0.96 16 18 C -0.14 -0.06 7.43 -25.92 -0.19 -0.25 16 19 C 0.12 0.13 11.44 -17.14 -0.20 -0.06 16 20 N -0.31 -0.86 12.57 30.75 0.39 -0.47 16 21 N -0.27 -0.55 3.86 -10.55 -0.04 -0.59 16 22 C 0.12 -0.19 11.18 -16.68 -0.19 -0.38 16 23 C -0.16 0.50 8.38 -39.95 -0.33 0.17 16 24 H 0.38 -2.19 8.08 45.56 0.37 -1.83 16 25 H 0.12 -0.05 7.71 -51.93 -0.40 -0.45 16 26 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 27 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 28 H 0.16 0.49 7.01 -52.48 -0.37 0.12 16 29 H 0.40 -0.79 7.62 -40.82 -0.31 -1.10 16 30 H 0.10 -0.25 8.10 -51.93 -0.42 -0.67 16 31 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 32 H 0.05 -0.07 7.85 -51.93 -0.41 -0.48 16 33 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 34 H 0.38 -1.25 9.12 45.56 0.42 -0.84 16 35 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.09 0.00 7.90 -51.93 -0.41 -0.41 16 37 H 0.20 -0.61 7.46 -52.48 -0.39 -1.00 16 38 H 0.18 -0.83 8.06 -52.49 -0.42 -1.26 16 39 H 0.17 -1.31 7.31 -52.49 -0.38 -1.69 16 LS Contribution 334.27 15.07 5.04 5.04 Total: 0.00 -12.06 334.27 -8.74 -20.80 By element: Atomic # 1 Polarization: -7.36 SS G_CDS: -4.01 Total: -11.37 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.54 Total: -1.08 kcal Atomic # 7 Polarization: -1.86 SS G_CDS: 0.06 Total: -1.80 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.86 Total: -4.65 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: -5.43 Total: -6.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -12.06 -8.74 -20.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_11618758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.052 kcal (2) G-P(sol) polarization free energy of solvation -12.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds