Wall clock time and date at job start Sat Mar 6 2021 21:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46995 * 2 1 4 4 C 1.50694 * 109.47167 * 239.99952 * 2 1 3 5 5 C 1.36449 * 120.29767 * 239.97269 * 4 2 1 6 6 C 1.40096 * 119.25698 * 179.73293 * 5 4 2 7 7 C 1.40850 * 132.86209 * 179.65681 * 6 5 4 8 8 C 1.46561 * 126.58378 * 0.67412 * 7 6 5 9 9 O 1.21721 * 119.99667 * 359.70842 * 8 7 6 10 10 N 1.34776 * 120.00064 * 179.71494 * 8 7 6 11 11 C 1.46503 * 119.99784 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85279 * 23.80346 * 11 10 8 13 13 C 1.53787 * 113.61181 * 154.99519 * 11 10 8 14 14 C 1.53784 * 87.07923 * 89.11654 * 13 11 10 15 15 H 1.09000 * 113.61578 * 270.88484 * 14 13 11 16 16 C 1.52997 * 113.61330 * 139.97966 * 14 13 11 17 17 O 1.42898 * 109.47183 * 174.99947 * 16 14 13 18 18 C 1.53778 * 113.61472 * 252.49040 * 11 10 8 19 19 C 1.40553 * 106.83637 * 180.41060 * 7 6 5 20 20 N 1.30742 * 108.74781 * 0.24041 * 19 7 6 21 21 N 1.36572 * 120.22788 * 0.54383 * 6 5 4 22 22 C 1.36249 * 120.08093 * 359.47836 * 21 6 5 23 23 C 1.35186 * 120.70440 * 0.25084 * 22 21 6 24 24 H 0.96697 * 114.00776 * 60.00077 * 1 2 3 25 25 H 1.09001 * 109.47074 * 119.99761 * 2 1 3 26 26 H 1.48497 * 110.00122 * 59.99743 * 3 2 1 27 27 H 1.48494 * 110.00274 * 181.32236 * 3 2 1 28 28 H 1.08005 * 120.36887 * 0.04582 * 5 4 2 29 29 H 0.96997 * 120.00437 * 359.97438 * 10 8 7 30 30 H 1.09004 * 113.61202 * 203.66406 * 13 11 10 31 31 H 1.08994 * 113.61447 * 334.56838 * 13 11 10 32 32 H 1.09004 * 109.47170 * 294.99762 * 16 14 13 33 33 H 1.08995 * 109.47328 * 55.00254 * 16 14 13 34 34 H 0.96700 * 114.00287 * 179.97438 * 17 16 14 35 35 H 1.08999 * 113.61111 * 25.43782 * 18 11 10 36 36 H 1.08999 * 113.61280 * 156.25165 * 18 11 10 37 37 H 1.08005 * 125.63174 * 180.22286 * 19 7 6 38 38 H 1.07997 * 119.64860 * 180.27746 * 22 21 6 39 39 H 1.07997 * 119.83737 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7166 -1.8200 -1.1123 6 6 3.1669 -2.4666 -2.2706 7 6 3.9750 -3.6006 -2.4822 8 6 4.5755 -4.4502 -1.4499 9 8 4.3966 -4.1964 -0.2730 10 7 5.3260 -5.5123 -1.8038 11 6 5.9267 -6.3612 -0.7718 12 1 5.3960 -6.3116 0.1789 13 6 6.2116 -7.7967 -1.2441 14 6 7.5886 -7.2885 -1.7030 15 1 7.5960 -6.9104 -2.7253 16 6 8.7286 -8.2697 -1.4226 17 8 9.9411 -7.7644 -1.9851 18 6 7.4488 -6.1865 -0.6397 19 6 4.0900 -3.7648 -3.8734 20 7 3.4171 -2.8132 -4.4658 21 7 2.8310 -1.9828 -3.5028 22 6 2.0469 -0.8738 -3.6105 23 6 1.5965 -0.2369 -2.5064 24 1 -0.3934 0.4416 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4679 1.2084 27 1 3.5345 1.7704 -0.0322 28 1 2.9838 -2.1984 -0.1366 29 1 5.4683 -5.7147 -2.7417 30 1 6.2623 -8.5216 -0.4316 31 1 5.5709 -8.1220 -2.0636 32 1 8.8494 -8.3882 -0.3458 33 1 8.4952 -9.2355 -1.8706 34 1 10.7081 -8.3364 -1.8450 35 1 7.8068 -5.2118 -0.9713 36 1 7.8375 -6.4698 0.3384 37 1 4.6432 -4.5477 -4.3710 38 1 1.7818 -0.4998 -4.5884 39 1 0.9754 0.6407 -2.6081 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_11618758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:07 Heat of formation + Delta-G solvation = 10.504995 kcal Electronic energy + Delta-G solvation = -24193.229014 eV Core-core repulsion = 20491.043438 eV Total energy + Delta-G solvation = -3702.185576 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.33936 -41.20032 -39.58862 -39.17968 -37.23983 -37.22113 -34.47857 -34.07648 -32.11521 -30.47173 -28.76612 -27.25901 -26.71078 -25.13174 -24.14538 -23.30645 -22.92306 -21.46441 -20.27911 -19.20425 -18.49359 -18.22251 -17.85333 -17.54310 -17.07547 -17.01997 -16.49883 -16.15116 -15.96187 -15.81280 -15.52318 -15.38369 -15.17948 -14.54864 -14.49564 -14.25464 -14.02853 -13.56057 -13.48443 -13.42954 -13.15848 -13.06668 -12.42102 -12.24919 -12.02386 -11.79940 -11.65854 -11.58883 -11.40706 -11.05747 -10.80294 -10.78831 -10.27845 -10.12236 -8.83549 -5.08244 -0.59565 -0.13047 0.96022 1.02659 1.19257 1.67192 1.95144 2.05104 2.14134 2.42525 3.05463 3.20939 3.22706 3.44516 3.47421 3.59116 3.68433 3.72309 3.83265 3.85644 3.93677 4.12201 4.16466 4.32811 4.36777 4.41340 4.55379 4.59957 4.64458 4.70695 4.74382 4.77460 4.86866 5.01393 5.07227 5.11761 5.13944 5.22244 5.25807 5.59954 5.65414 6.25432 6.53430 6.76503 6.88855 7.22373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.077 4.077 3 Si 0.817 3.183 4 C -0.052 4.052 5 C -0.136 4.136 6 C 0.152 3.848 7 C -0.349 4.349 8 C 0.599 3.401 9 O -0.595 6.595 10 N -0.698 5.698 11 C 0.114 3.886 12 H 0.085 0.915 13 C -0.121 4.121 14 C -0.107 4.107 15 H 0.094 0.906 16 C 0.081 3.919 17 O -0.599 6.599 18 C -0.146 4.146 19 C 0.131 3.869 20 N -0.337 5.337 21 N -0.273 5.273 22 C 0.115 3.885 23 C -0.145 4.145 24 H 0.401 0.599 25 H 0.105 0.895 26 H -0.289 1.289 27 H -0.304 1.304 28 H 0.137 0.863 29 H 0.412 0.588 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.395 0.605 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.232 0.768 38 H 0.215 0.785 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 1.050 -5.018 5.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.185 4.185 3 Si 0.721 3.279 4 C -0.058 4.058 5 C -0.156 4.156 6 C 0.030 3.970 7 C -0.364 4.364 8 C 0.390 3.610 9 O -0.477 6.477 10 N -0.348 5.348 11 C 0.009 3.991 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.126 4.126 15 H 0.112 0.888 16 C 0.003 3.997 17 O -0.407 6.407 18 C -0.185 4.185 19 C -0.050 4.050 20 N -0.157 5.157 21 N -0.037 5.037 22 C -0.010 4.010 23 C -0.165 4.165 24 H 0.252 0.748 25 H 0.122 0.878 26 H -0.216 1.216 27 H -0.232 1.232 28 H 0.154 0.846 29 H 0.249 0.751 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.245 0.755 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.248 0.752 38 H 0.232 0.768 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.211 2.362 -4.666 5.678 hybrid contribution 1.169 -1.760 1.092 2.378 sum -1.043 0.601 -3.574 3.771 Atomic orbital electron populations 1.86584 1.15852 1.82290 1.50755 1.25333 0.86028 1.11231 0.95900 0.93865 0.76844 0.72179 0.85034 1.20788 0.93954 0.93466 0.97634 1.20642 1.01157 0.96634 0.97169 1.19455 0.95964 0.94533 0.87012 1.19680 1.17638 1.04753 0.94294 1.17082 0.77129 0.79892 0.86936 1.90745 1.63618 1.72974 1.20365 1.45235 1.51319 1.27878 1.10412 1.21840 0.93595 0.91534 0.92156 0.89709 1.23278 0.95077 0.94804 1.02728 1.22569 0.94144 0.96182 0.99658 0.88750 1.22284 0.83885 0.96159 0.97337 1.86444 1.20203 1.52963 1.81116 1.23496 0.95635 0.99222 1.00167 1.24553 0.93487 0.95871 0.91050 1.77552 1.19627 1.07149 1.11351 1.46389 1.32528 1.19732 1.05004 1.22507 0.90512 0.83839 1.04171 1.21372 1.03442 1.03569 0.88135 0.74751 0.87755 1.21594 1.23196 0.84558 0.75057 0.87103 0.89100 0.92687 0.92086 0.75487 0.92828 0.88768 0.75198 0.76822 0.75983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.72 12.87 -148.98 -1.92 -0.20 16 2 C -0.08 0.17 2.84 71.23 0.20 0.37 16 3 Si 0.82 -3.91 31.96 68.60 2.19 -1.72 16 4 C -0.05 0.05 4.53 -19.82 -0.09 -0.04 16 5 C -0.14 -0.99 9.35 22.30 0.21 -0.78 16 6 C 0.15 1.32 6.76 39.50 0.27 1.59 16 7 C -0.35 -2.97 6.17 -19.90 -0.12 -3.10 16 8 C 0.60 6.43 7.78 86.41 0.67 7.11 16 9 O -0.59 -11.05 15.30 -4.41 -0.07 -11.12 16 10 N -0.70 -2.25 5.25 -444.08 -2.33 -4.58 16 11 C 0.11 0.32 4.32 45.52 0.20 0.51 16 12 H 0.08 0.61 7.46 -2.39 -0.02 0.59 16 13 C -0.12 0.42 7.39 31.12 0.23 0.65 16 14 C -0.11 0.13 3.89 -10.27 -0.04 0.09 16 15 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 16 C 0.08 -0.16 6.88 71.98 0.50 0.34 16 17 O -0.60 -0.99 13.66 -148.98 -2.03 -3.02 16 18 C -0.15 -0.38 7.43 31.12 0.23 -0.15 16 19 C 0.13 0.40 11.44 85.42 0.98 1.38 16 20 N -0.34 -1.94 12.57 -56.61 -0.71 -2.65 16 21 N -0.27 -1.21 3.86 -187.28 -0.72 -1.93 16 22 C 0.12 -0.56 11.18 83.30 0.93 0.37 16 23 C -0.14 1.24 8.38 22.03 0.18 1.43 16 24 H 0.40 -5.78 8.08 -74.06 -0.60 -6.38 16 25 H 0.10 0.15 7.71 -2.39 -0.02 0.13 16 26 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 27 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 28 H 0.14 1.53 7.01 -2.91 -0.02 1.51 16 29 H 0.41 -1.27 7.62 -92.71 -0.71 -1.98 16 30 H 0.11 -0.63 8.10 -2.39 -0.02 -0.65 16 31 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.05 -0.19 7.85 -2.38 -0.02 -0.21 16 33 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.40 -2.65 9.12 -74.06 -0.68 -3.32 16 35 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.09 0.15 7.90 -2.39 -0.02 0.13 16 37 H 0.23 -1.46 7.46 -2.91 -0.02 -1.48 16 38 H 0.22 -2.69 8.06 -2.91 -0.02 -2.71 16 39 H 0.22 -4.59 7.31 -2.91 -0.02 -4.61 16 Total: 0.00 -33.27 334.27 -2.08 -35.35 By element: Atomic # 1 Polarization: -19.06 SS G_CDS: -0.82 Total: -19.89 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.34 Total: 9.77 kcal Atomic # 7 Polarization: -5.40 SS G_CDS: -3.77 Total: -9.17 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -4.02 Total: -14.34 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.19 Total: -1.72 kcal Total: -33.27 -2.08 -35.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_11618758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.852 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds