Wall clock time and date at job start Sat Mar 6 2021 21:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35658 * 116.99869 * 2 1 4 4 C 1.38407 * 120.12205 * 0.02562 * 3 2 1 5 5 C 1.38728 * 120.03217 * 180.02562 * 4 3 2 6 6 O 1.35710 * 119.86022 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00399 * 359.97438 * 6 5 4 8 8 C 1.39140 * 120.27387 * 359.97438 * 5 4 3 9 9 C 1.50701 * 119.87844 * 180.02562 * 8 5 4 10 10 O 1.42891 * 109.47175 * 285.00173 * 9 8 5 11 11 Si 1.86298 * 109.46909 * 165.00225 * 9 8 5 12 12 C 1.37586 * 120.23970 * 359.74740 * 8 5 4 13 13 C 1.39814 * 119.96624 * 0.52810 * 12 8 5 14 14 C 1.47299 * 120.13990 * 179.74516 * 13 12 8 15 15 O 1.21615 * 120.00124 * 179.72324 * 14 13 12 16 16 N 1.34778 * 119.99714 * 359.72762 * 14 13 12 17 17 C 1.46500 * 119.99919 * 180.02562 * 16 14 13 18 18 H 1.09002 * 112.85132 * 25.33083 * 17 16 14 19 19 C 1.53781 * 113.61711 * 156.52821 * 17 16 14 20 20 C 1.53785 * 87.08277 * 89.19510 * 19 17 16 21 21 H 1.08999 * 113.61409 * 270.80258 * 20 19 17 22 22 C 1.52995 * 113.61328 * 139.98018 * 20 19 17 23 23 O 1.42895 * 109.47026 * 175.00305 * 22 20 19 24 24 C 1.53776 * 87.07661 * 25.43397 * 20 19 17 25 25 H 1.09004 * 109.47169 * 299.99867 * 1 2 3 26 26 H 1.09000 * 109.47396 * 59.99852 * 1 2 3 27 27 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.97900 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.46488 * 60.00044 * 7 6 5 30 30 H 1.08999 * 109.47567 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.46998 * 300.00867 * 7 6 5 32 32 H 1.08996 * 109.47100 * 45.00601 * 9 8 5 33 33 H 0.96699 * 114.00424 * 180.02562 * 10 9 8 34 34 H 1.48498 * 110.00346 * 298.68000 * 11 9 8 35 35 H 1.48498 * 110.00229 * 59.99995 * 11 9 8 36 36 H 1.08003 * 120.01773 * 180.28193 * 12 8 5 37 37 H 0.96998 * 120.00229 * 359.97438 * 16 14 13 38 38 H 1.08993 * 113.62030 * 203.74957 * 19 17 16 39 39 H 1.09006 * 113.61109 * 334.56882 * 19 17 16 40 40 H 1.09000 * 109.47057 * 295.00615 * 22 20 19 41 41 H 1.09003 * 109.46758 * 55.00377 * 22 20 19 42 42 H 0.96705 * 113.99857 * 180.02562 * 23 22 20 43 43 H 1.09003 * 113.61687 * 220.01420 * 24 20 19 44 44 H 1.09009 * 113.61565 * 89.11769 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2934 2.3711 0.0005 5 6 1.9252 3.6062 0.0000 6 8 1.1850 4.7437 0.0000 7 6 -0.2361 4.5932 0.0000 8 6 3.3144 3.6835 -0.0005 9 6 3.9914 5.0299 -0.0005 10 8 3.8933 5.6124 -1.3017 11 14 5.7863 4.8224 0.4532 12 6 4.0723 2.5352 0.0047 13 6 3.4461 1.2852 -0.0006 14 6 4.2538 0.0534 -0.0007 15 8 3.7065 -1.0327 -0.0002 16 7 5.5994 0.1299 -0.0012 17 6 6.4028 -1.0952 -0.0019 18 1 5.8755 -1.9469 -0.4316 19 6 7.8211 -0.9015 -0.5636 20 6 8.2568 -0.5555 0.8701 21 1 8.1678 0.5041 1.1097 22 6 9.6176 -1.1394 1.2549 23 8 9.9872 -0.6706 2.5531 24 6 7.0655 -1.4001 1.3518 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2148 2.3165 0.0005 29 1 -0.5432 4.0439 0.8900 30 1 -0.7057 5.5768 -0.0005 31 1 -0.5432 4.0438 -0.8899 32 1 3.5057 5.6807 0.7265 33 1 4.3089 6.4823 -1.3756 34 1 5.9022 4.2470 1.8173 35 1 6.4598 3.9370 -0.5304 36 1 5.1504 2.5994 0.0089 37 1 6.0359 0.9961 -0.0019 38 1 8.2682 -1.8188 -0.9465 39 1 7.9047 -0.0672 -1.2601 40 1 9.5561 -2.2276 1.2654 41 1 10.3666 -0.8248 0.5281 42 1 10.8417 -1.0013 2.8622 43 1 6.5394 -0.9676 2.2029 44 1 7.3061 -2.4540 1.4928 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_12297780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:12 Heat of formation + Delta-G solvation = -128.200099 kcal Electronic energy + Delta-G solvation = -28406.411974 eV Core-core repulsion = 24292.613793 eV Total energy + Delta-G solvation = -4113.798180 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.25935 -41.22529 -40.22264 -39.44585 -38.40559 -37.28930 -37.09671 -34.54193 -32.47009 -31.84563 -29.08151 -28.94949 -28.11730 -26.79828 -26.12677 -25.00141 -23.65483 -22.76179 -21.74442 -20.42955 -20.06577 -18.85625 -18.41013 -18.32594 -18.13456 -17.46109 -17.18210 -16.96574 -16.60920 -16.50228 -16.22334 -16.09007 -15.85460 -15.64720 -15.49301 -15.31770 -14.72933 -14.43776 -14.20827 -13.96666 -13.85805 -13.60104 -13.51041 -13.47404 -13.12793 -12.78266 -12.62013 -12.59078 -12.22535 -11.98457 -11.88062 -11.77241 -11.73708 -11.47282 -11.12832 -10.83465 -10.25747 -10.24516 -10.05737 -9.32866 -4.97117 -0.43443 -0.07741 1.27662 1.53700 1.64932 1.89841 1.91021 1.99653 2.06600 2.41872 3.15894 3.21717 3.33782 3.40849 3.54795 3.60654 3.61239 3.75549 3.90832 3.91866 4.05574 4.06033 4.14099 4.21726 4.22269 4.27032 4.32141 4.38626 4.49168 4.55945 4.58282 4.62054 4.63670 4.65584 4.68825 4.72927 4.80198 4.91538 4.93668 5.03811 5.09029 5.13624 5.48174 5.92851 6.16590 6.30465 6.86794 6.95146 7.03074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.304 6.304 3 C 0.220 3.780 4 C -0.307 4.307 5 C 0.219 3.781 6 O -0.305 6.305 7 C 0.010 3.990 8 C -0.169 4.169 9 C -0.065 4.065 10 O -0.561 6.561 11 Si 0.761 3.239 12 C -0.015 4.015 13 C -0.233 4.233 14 C 0.565 3.435 15 O -0.557 6.557 16 N -0.708 5.708 17 C 0.110 3.890 18 H 0.092 0.908 19 C -0.122 4.122 20 C -0.111 4.111 21 H 0.085 0.915 22 C 0.083 3.917 23 O -0.599 6.599 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.172 0.828 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.401 0.599 34 H -0.285 1.285 35 H -0.273 1.273 36 H 0.142 0.858 37 H 0.403 0.597 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.397 0.603 43 H 0.052 0.948 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 5.612 -0.413 5.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.214 6.214 3 C 0.171 3.829 4 C -0.327 4.327 5 C 0.171 3.829 6 O -0.217 6.217 7 C -0.084 4.084 8 C -0.170 4.170 9 C -0.174 4.174 10 O -0.371 6.371 11 Si 0.665 3.335 12 C -0.033 4.033 13 C -0.237 4.237 14 C 0.354 3.646 15 O -0.436 6.436 16 N -0.360 5.360 17 C 0.005 3.995 18 H 0.110 0.890 19 C -0.159 4.159 20 C -0.130 4.130 21 H 0.103 0.897 22 C 0.006 3.994 23 O -0.407 6.407 24 C -0.182 4.182 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.134 0.866 28 H 0.189 0.811 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.252 0.748 34 H -0.212 1.212 35 H -0.200 1.200 36 H 0.159 0.841 37 H 0.239 0.761 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.071 0.929 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.549 4.032 -0.368 4.086 hybrid contribution -0.458 -0.301 0.184 0.578 sum 0.091 3.731 -0.184 3.737 Atomic orbital electron populations 1.23531 0.76141 1.06022 1.02864 1.86362 1.23566 1.25584 1.85928 1.18898 0.90665 0.85072 0.88278 1.21484 1.02279 0.90477 1.18420 1.18835 0.90579 0.85310 0.88206 1.86123 1.21231 1.28046 1.86255 1.23534 0.75944 1.06271 1.02648 1.18808 0.90871 0.95296 1.12020 1.24615 1.11365 0.92124 0.89277 1.86458 1.82631 1.39237 1.28764 0.94242 0.74979 0.87740 0.76563 1.20818 0.99215 0.90076 0.93217 1.19121 0.91377 0.93438 1.19791 1.18044 0.82356 0.88494 0.75690 1.90797 1.72136 1.29940 1.50725 1.45551 1.05239 1.09796 1.75384 1.21934 0.91904 0.87537 0.98102 0.89035 1.23299 0.92616 1.04440 0.95582 1.22573 0.93815 1.00038 0.96550 0.89681 1.22254 0.95175 0.97804 0.84200 1.86447 1.43805 1.75587 1.34903 1.23498 0.96693 1.01394 0.96664 0.90746 0.90844 0.86611 0.81105 0.91038 0.85608 0.91420 0.89822 0.74837 1.21160 1.19958 0.84121 0.76061 0.86287 0.89629 0.92212 0.91973 0.75366 0.92949 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.30 -3.49 8.56 -68.77 -0.59 -4.07 16 3 C 0.22 2.30 6.70 22.82 0.15 2.45 16 4 C -0.31 -1.53 8.01 22.43 0.18 -1.35 16 5 C 0.22 1.33 6.67 22.60 0.15 1.48 16 6 O -0.31 -1.00 9.80 -90.31 -0.89 -1.89 16 7 C 0.01 -0.05 9.81 113.37 1.11 1.06 16 8 C -0.17 -1.14 5.31 -19.80 -0.11 -1.24 16 9 C -0.06 -0.08 2.36 71.24 0.17 0.09 16 10 O -0.56 -0.67 12.86 -148.98 -1.92 -2.58 16 11 Si 0.76 -1.75 30.18 68.60 2.07 0.32 16 12 C -0.01 -0.11 8.14 22.50 0.18 0.07 16 13 C -0.23 -2.70 5.89 -20.00 -0.12 -2.82 16 14 C 0.56 7.93 7.76 86.63 0.67 8.60 16 15 O -0.56 -11.68 14.77 16.88 0.25 -11.44 16 16 N -0.71 -5.40 5.22 -443.42 -2.31 -7.71 16 17 C 0.11 0.57 4.30 45.52 0.20 0.76 16 18 H 0.09 0.77 7.50 -2.39 -0.02 0.75 16 19 C -0.12 0.16 7.38 31.12 0.23 0.39 16 20 C -0.11 -0.12 3.90 -10.27 -0.04 -0.16 16 21 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 22 C 0.08 -0.09 6.88 71.98 0.50 0.41 16 23 O -0.60 -1.45 13.66 -148.98 -2.03 -3.48 16 24 C -0.14 -0.62 7.43 31.12 0.23 -0.38 16 25 H 0.07 -0.23 7.66 -2.39 -0.02 -0.25 16 26 H 0.07 -0.21 7.66 -2.39 -0.02 -0.23 16 27 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.17 -0.25 4.50 -2.91 -0.01 -0.26 16 29 H 0.07 -0.50 7.65 -2.39 -0.02 -0.52 16 30 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 31 H 0.07 -0.41 7.65 -2.39 -0.02 -0.43 16 32 H 0.08 -0.08 7.82 -2.39 -0.02 -0.10 16 33 H 0.40 -3.77 8.74 -74.06 -0.65 -4.42 16 34 H -0.28 -0.98 7.11 99.48 0.71 -0.27 16 35 H -0.27 -0.42 6.75 99.48 0.67 0.25 16 36 H 0.14 0.63 3.20 -2.91 -0.01 0.62 16 37 H 0.40 1.49 6.72 -92.71 -0.62 0.87 16 38 H 0.12 -0.58 8.10 -2.39 -0.02 -0.60 16 39 H 0.09 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H 0.06 -0.19 7.84 -2.39 -0.02 -0.21 16 41 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.40 -2.50 9.12 -74.05 -0.68 -3.17 16 43 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.10 0.22 7.90 -2.38 -0.02 0.20 16 Total: 0.00 -27.59 360.12 -1.67 -29.26 By element: Atomic # 1 Polarization: -8.04 SS G_CDS: -0.87 Total: -8.91 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 4.62 Total: 10.49 kcal Atomic # 7 Polarization: -5.40 SS G_CDS: -2.31 Total: -7.71 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -5.17 Total: -23.46 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.07 Total: 0.32 kcal Total: -27.59 -1.67 -29.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_12297780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.937 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds