Wall clock time and date at job start Sat Mar 6 2021 21:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50695 * 109.47376 * 239.99547 * 2 1 3 5 5 C 1.38233 * 119.99980 * 300.00463 * 4 2 1 6 6 C 1.38238 * 120.00201 * 179.97438 * 5 4 2 7 7 C 1.38236 * 119.99712 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99895 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47024 * 89.99494 * 8 7 6 10 10 O 1.21275 * 119.99947 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99715 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99597 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.91090 * 23.74977 * 12 11 9 14 14 C 1.53781 * 113.61334 * 154.99978 * 12 11 9 15 15 C 1.53786 * 87.17350 * 89.07333 * 14 12 11 16 16 H 1.09000 * 113.60973 * 270.92699 * 15 14 12 17 17 C 1.52990 * 113.61464 * 140.02626 * 15 14 12 18 18 O 1.42903 * 109.47168 * 175.00198 * 17 15 14 19 19 C 1.53781 * 113.61146 * 252.49455 * 12 11 9 20 20 C 1.38238 * 120.00045 * 0.26877 * 7 6 5 21 21 C 1.38232 * 119.99740 * 359.52324 * 20 7 6 22 22 H 0.96707 * 114.00351 * 300.00490 * 1 2 3 23 23 H 1.09003 * 109.46912 * 119.99565 * 2 1 3 24 24 H 1.48501 * 109.99988 * 178.68149 * 3 2 1 25 25 H 1.48501 * 109.99685 * 299.99569 * 3 2 1 26 26 H 1.08002 * 120.00293 * 359.97438 * 5 4 2 27 27 H 1.07998 * 120.00234 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47138 * 330.00267 * 8 7 6 29 29 H 1.08993 * 109.47086 * 209.99586 * 8 7 6 30 30 H 0.96995 * 120.00232 * 359.97438 * 11 9 8 31 31 H 1.09002 * 113.61445 * 203.66333 * 14 12 11 32 32 H 1.09002 * 113.61408 * 334.48063 * 14 12 11 33 33 H 1.09007 * 109.47036 * 294.99322 * 17 15 14 34 34 H 1.08994 * 109.47734 * 54.99728 * 17 15 14 35 35 H 0.96700 * 114.00200 * 179.97438 * 18 17 15 36 36 H 1.09005 * 113.61471 * 25.43638 * 19 12 11 37 37 H 1.08996 * 113.61178 * 156.24980 * 19 12 11 38 38 H 1.08001 * 119.99632 * 179.72790 * 20 7 6 39 39 H 1.07998 * 119.99734 * 180.27444 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2303 5 6 1.5973 -2.0339 -1.4491 6 6 2.0577 -2.6855 -2.5779 7 6 2.8517 -2.0135 -3.4884 8 6 3.3531 -2.7236 -4.7193 9 6 2.3595 -2.5503 -5.8391 10 8 1.3444 -1.9125 -5.6557 11 7 2.5990 -3.1041 -7.0442 12 6 1.6333 -2.9351 -8.1329 13 1 1.0060 -2.0521 -8.0105 14 6 2.2560 -3.0589 -9.5335 15 6 1.9712 -4.5675 -9.4436 16 1 2.7820 -5.1386 -8.9912 17 6 1.4737 -5.1765 -10.7558 18 8 1.3491 -6.5923 -10.6068 19 6 0.8416 -4.2128 -8.4580 20 6 3.1898 -0.6915 -3.2671 21 6 2.7259 -0.0387 -2.1404 22 1 -0.3934 0.4418 0.7650 23 1 1.7922 -0.5138 0.8901 24 1 3.5346 1.7702 0.0321 25 1 1.5615 2.4678 -1.2086 26 1 0.9767 -2.5589 -0.7380 27 1 1.7971 -3.7196 -2.7486 28 1 3.4744 -3.7849 -4.5025 29 1 4.3129 -2.3014 -5.0167 30 1 3.4110 -3.6139 -7.1910 31 1 1.6850 -2.5524 -10.3116 32 1 3.3183 -2.8160 -9.5621 33 1 0.5024 -4.7510 -11.0087 34 1 2.1851 -4.9562 -11.5516 35 1 1.0369 -7.0455 -11.4020 36 1 0.7623 -4.9029 -7.6179 37 1 -0.1167 -4.0217 -8.9407 38 1 3.8137 -0.1678 -3.9763 39 1 2.9864 0.9954 -1.9698 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_12335836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:17 Heat of formation + Delta-G solvation = -70.502187 kcal Electronic energy + Delta-G solvation = -20953.237068 eV Core-core repulsion = 17634.842860 eV Total energy + Delta-G solvation = -3318.394208 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53352 -40.63368 -39.48970 -37.65172 -37.25481 -34.54883 -34.04055 -32.10820 -30.13060 -28.62271 -26.74011 -25.80327 -24.00180 -23.53822 -22.41408 -21.46980 -20.31019 -18.42597 -18.34891 -18.18978 -17.73637 -17.13861 -16.89264 -16.45572 -16.18981 -15.96518 -15.69173 -15.24104 -15.06856 -14.89197 -14.62318 -14.44566 -13.87568 -13.63555 -13.52528 -13.48909 -13.20897 -13.13406 -12.91092 -12.36072 -12.10473 -11.86776 -11.82961 -11.67465 -11.44023 -11.10388 -10.81303 -10.37326 -10.12699 -10.04226 -9.69980 -4.98820 0.08822 0.28397 1.27141 1.52929 1.59570 1.94976 2.04414 2.63176 3.19450 3.38805 3.44277 3.53542 3.65112 3.69619 3.77811 3.80994 3.91677 3.96480 4.09470 4.22205 4.30515 4.37640 4.43079 4.50990 4.52793 4.57813 4.61646 4.69705 4.72324 4.79412 4.89252 4.93488 4.98156 5.07925 5.18750 5.21281 5.38775 5.43464 5.56058 5.86525 6.47097 6.86350 6.88349 7.18743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.081 4.081 3 Si 0.779 3.221 4 C -0.097 4.097 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.071 4.071 8 C -0.096 4.096 9 C 0.514 3.486 10 O -0.581 6.581 11 N -0.701 5.701 12 C 0.111 3.889 13 H 0.080 0.920 14 C -0.122 4.122 15 C -0.106 4.106 16 H 0.096 0.904 17 C 0.080 3.920 18 O -0.598 6.598 19 C -0.147 4.147 20 C -0.111 4.111 21 C -0.146 4.146 22 H 0.403 0.597 23 H 0.096 0.904 24 H -0.284 1.284 25 H -0.305 1.305 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.418 0.582 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.396 0.604 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -1.483 -0.718 4.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.190 4.190 3 Si 0.685 3.315 4 C -0.097 4.097 5 C -0.120 4.120 6 C -0.130 4.130 7 C -0.072 4.072 8 C -0.135 4.135 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.005 3.995 13 H 0.098 0.902 14 C -0.160 4.160 15 C -0.125 4.125 16 H 0.114 0.886 17 C 0.002 3.998 18 O -0.407 6.407 19 C -0.185 4.185 20 C -0.129 4.129 21 C -0.164 4.164 22 H 0.254 0.746 23 H 0.114 0.886 24 H -0.212 1.212 25 H -0.233 1.233 26 H 0.153 0.847 27 H 0.158 0.842 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.255 0.745 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.156 0.844 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.899 -0.618 -0.950 4.061 hybrid contribution -0.068 -0.755 -0.933 1.202 sum 3.831 -1.372 -1.884 4.484 Atomic orbital electron populations 1.86456 1.17364 1.82382 1.51390 1.24869 0.85802 1.11105 0.97271 0.94556 0.77238 0.75243 0.84418 1.19740 0.98344 0.95118 0.96462 1.21171 0.98738 0.93968 0.98173 1.21353 0.96676 1.01001 0.93938 1.19578 0.97876 0.94048 0.95695 1.20760 0.98884 1.04570 0.89318 1.21051 0.86985 0.77724 0.84050 1.90751 1.30175 1.42223 1.82880 1.45582 1.24605 1.54869 1.10275 1.21821 0.91878 0.98443 0.87338 0.90154 1.23262 1.02923 0.94560 0.95246 1.22609 0.98614 0.95830 0.95419 0.88555 1.22283 0.99944 0.80618 0.96906 1.86440 1.90574 1.20555 1.43121 1.23529 0.98481 0.97106 0.99414 1.21151 1.00282 0.94581 0.96894 1.20985 1.00531 0.98897 0.95951 0.74566 0.88583 1.21176 1.23347 0.84669 0.84165 0.84795 0.84803 0.74488 0.87491 0.89034 0.92835 0.92141 0.75457 0.92480 0.89135 0.84420 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.11 12.74 -148.98 -1.90 -4.01 16 2 C -0.08 -0.25 2.81 71.23 0.20 -0.05 16 3 Si 0.78 0.89 29.79 68.60 2.04 2.93 16 4 C -0.10 -0.88 5.42 -19.87 -0.11 -0.99 16 5 C -0.10 -0.84 9.61 22.27 0.21 -0.63 16 6 C -0.11 -0.72 9.70 22.27 0.22 -0.51 16 7 C -0.07 -0.40 4.37 -19.86 -0.09 -0.49 16 8 C -0.10 0.18 5.83 29.10 0.17 0.35 16 9 C 0.51 2.35 7.82 87.66 0.69 3.03 16 10 O -0.58 -9.15 15.64 -3.01 -0.05 -9.20 16 11 N -0.70 0.80 5.26 -440.03 -2.32 -1.52 16 12 C 0.11 0.09 4.32 45.52 0.20 0.29 16 13 H 0.08 0.49 7.47 -2.39 -0.02 0.47 16 14 C -0.12 0.58 7.38 31.12 0.23 0.81 16 15 C -0.11 0.26 3.90 -10.18 -0.04 0.22 16 16 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 17 C 0.08 -0.22 6.89 71.98 0.50 0.28 16 18 O -0.60 -0.51 13.66 -148.98 -2.04 -2.55 16 19 C -0.15 -0.16 7.44 31.21 0.23 0.07 16 20 C -0.11 -0.84 9.70 22.27 0.22 -0.63 16 21 C -0.15 -1.45 8.67 22.27 0.19 -1.26 16 22 H 0.40 -3.05 8.74 -74.05 -0.65 -3.70 16 23 H 0.10 -0.16 7.96 -2.39 -0.02 -0.18 16 24 H -0.28 -1.59 7.11 99.48 0.71 -0.89 16 25 H -0.30 -3.04 7.11 99.48 0.71 -2.33 16 26 H 0.14 0.75 8.06 -2.91 -0.02 0.72 16 27 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 28 H 0.13 -0.98 8.09 -2.39 -0.02 -1.00 16 29 H 0.13 -1.01 8.08 -2.39 -0.02 -1.03 16 30 H 0.42 -3.22 8.70 -92.71 -0.81 -4.03 16 31 H 0.11 -0.67 8.10 -2.39 -0.02 -0.69 16 32 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.05 -0.21 7.85 -2.38 -0.02 -0.23 16 34 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.40 -2.91 9.12 -74.06 -0.68 -3.58 16 36 H 0.06 0.24 8.14 -2.38 -0.02 0.23 16 37 H 0.09 0.09 7.91 -2.39 -0.02 0.07 16 38 H 0.14 0.46 8.06 -2.91 -0.02 0.43 16 39 H 0.11 1.03 4.88 -2.91 -0.01 1.01 16 Total: 0.00 -27.07 328.83 -2.45 -29.52 By element: Atomic # 1 Polarization: -14.67 SS G_CDS: -1.01 Total: -15.68 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 2.82 Total: 0.50 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -2.32 Total: -1.52 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -3.98 Total: -15.75 kcal Atomic # 14 Polarization: 0.89 SS G_CDS: 2.04 Total: 2.93 kcal Total: -27.07 -2.45 -29.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_12335836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.981 kcal (2) G-P(sol) polarization free energy of solvation -27.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds