Wall clock time and date at job start Sat Mar 6 2021 21:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.47312 * 2 1 4 4 C 1.50700 * 109.46701 * 119.99698 * 2 1 3 5 5 C 1.38394 * 119.83025 * 65.00197 * 4 2 1 6 6 C 1.37892 * 120.17394 * 180.02562 * 5 4 2 7 7 C 1.39830 * 119.82612 * 359.97438 * 6 5 4 8 8 C 1.47211 * 120.17021 * 179.97438 * 7 6 5 9 9 C 1.34810 * 120.00030 * 180.02562 * 8 7 6 10 10 C 1.46427 * 120.00122 * 179.97438 * 9 8 7 11 11 O 1.21695 * 120.00011 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99744 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99418 * 180.02562 * 12 10 9 14 14 H 1.08993 * 112.90992 * 23.74741 * 13 12 10 15 15 C 1.53783 * 113.61007 * 154.99668 * 13 12 10 16 16 C 1.53786 * 87.08050 * 89.11544 * 15 13 12 17 17 H 1.09002 * 113.61357 * 270.88070 * 16 15 13 18 18 C 1.53003 * 113.61503 * 140.06140 * 16 15 13 19 19 O 1.42900 * 109.46913 * 176.52446 * 18 16 15 20 20 C 1.53781 * 87.17350 * 25.47154 * 16 15 13 21 21 C 1.39837 * 119.66111 * 0.25591 * 7 6 5 22 22 C 1.37896 * 119.82518 * 359.47173 * 21 7 6 23 23 H 0.96698 * 114.00145 * 300.00367 * 1 2 3 24 24 H 1.08992 * 109.47393 * 239.99256 * 2 1 3 25 25 H 1.48498 * 109.99852 * 178.67991 * 3 2 1 26 26 H 1.48497 * 109.99676 * 299.99594 * 3 2 1 27 27 H 1.08002 * 119.91569 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.08919 * 180.02562 * 6 5 4 29 29 H 1.07998 * 120.00031 * 0.02562 * 8 7 6 30 30 H 1.08006 * 119.99663 * 359.97438 * 9 8 7 31 31 H 0.96995 * 120.00261 * 359.97438 * 12 10 9 32 32 H 1.08992 * 113.61796 * 334.56401 * 15 13 12 33 33 H 1.09005 * 113.68996 * 203.67012 * 15 13 12 34 34 H 1.08997 * 109.46971 * 296.52802 * 18 16 15 35 35 H 1.09004 * 109.46713 * 56.53041 * 18 16 15 36 36 H 0.96698 * 114.00132 * 179.97438 * 19 18 16 37 37 H 1.08999 * 113.61567 * 89.07405 * 20 16 15 38 38 H 1.08998 * 113.61196 * 219.97759 * 20 16 15 39 39 H 1.08002 * 120.08690 * 179.74142 * 21 7 6 40 40 H 1.07997 * 119.91422 * 180.27118 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6823 -2.0618 1.3951 6 6 2.1381 -2.7187 2.5185 7 6 2.8540 -2.0159 3.4927 8 6 3.3436 -2.7096 4.6952 9 6 4.0330 -2.0286 5.6325 10 6 4.5195 -2.7185 6.8289 11 8 4.3012 -3.9064 6.9775 12 7 5.2082 -2.0375 7.7662 13 6 5.6955 -2.7278 8.9630 14 1 5.8165 -3.8008 8.8142 15 6 6.9179 -2.0537 9.6081 16 6 5.9238 -1.2169 10.4306 17 1 5.6236 -0.2902 9.9414 18 6 6.3532 -1.0092 11.8844 19 8 5.4126 -0.1576 12.5418 20 6 4.9189 -2.3658 10.2432 21 6 3.0973 -0.6496 3.3215 22 6 2.6398 -0.0080 2.1899 23 1 -0.3933 0.4417 0.7650 24 1 1.7924 -0.5139 -0.8898 25 1 3.5347 1.7702 0.0321 26 1 1.5616 2.4678 -1.2085 27 1 1.1289 -2.6031 0.6420 28 1 1.9434 -3.7734 2.6454 29 1 3.1506 -3.7640 4.8267 30 1 4.2263 -0.9742 5.5008 31 1 5.3819 -1.0905 7.6480 32 1 7.5111 -1.4643 8.9091 33 1 7.5233 -2.7300 10.2117 34 1 6.3893 -1.9723 12.3936 35 1 7.3404 -0.5477 11.9092 36 1 5.6221 0.0175 13.4694 37 1 4.9778 -3.1284 11.0198 38 1 3.8995 -2.0282 10.0565 39 1 3.6458 -0.0992 4.0716 40 1 2.8307 1.0463 2.0541 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_12360594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:43 Heat of formation + Delta-G solvation = -51.242630 kcal Electronic energy + Delta-G solvation = -21569.569416 eV Core-core repulsion = 18123.784225 eV Total energy + Delta-G solvation = -3445.785191 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36480 -40.61413 -39.60044 -37.77667 -37.24110 -35.07841 -34.34380 -32.20854 -31.27920 -28.93599 -27.11091 -26.70290 -24.54627 -23.96844 -23.15743 -22.13688 -20.54691 -20.22257 -18.87698 -18.23240 -18.13293 -17.27393 -16.92584 -16.54432 -16.32153 -16.12559 -15.97947 -15.60865 -15.59454 -15.12932 -14.96934 -14.55226 -14.52246 -14.18668 -13.82386 -13.53012 -13.45401 -13.28792 -13.07822 -13.01499 -12.25931 -12.06599 -11.80849 -11.72527 -11.64132 -11.40679 -11.36156 -11.12117 -10.78246 -10.43932 -10.12382 -9.99311 -9.26074 -5.00207 -0.56999 0.38477 0.86777 1.30606 1.64024 1.97270 2.11356 2.19668 2.80345 3.22635 3.46997 3.47898 3.57773 3.67552 3.69167 3.80134 3.84585 3.93884 4.13302 4.15123 4.19480 4.34864 4.40831 4.42733 4.51847 4.56356 4.64596 4.72844 4.75990 4.82090 4.83800 4.96094 5.01967 5.07898 5.09963 5.16665 5.21688 5.37296 5.47038 5.58281 5.59691 5.89067 6.50693 6.75367 6.89559 7.18154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.079 4.079 3 Si 0.780 3.220 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.081 4.081 8 C -0.020 4.020 9 C -0.209 4.209 10 C 0.543 3.457 11 O -0.592 6.592 12 N -0.695 5.695 13 C 0.110 3.890 14 H 0.084 0.916 15 C -0.122 4.122 16 C -0.108 4.108 17 H 0.095 0.905 18 C 0.080 3.920 19 O -0.598 6.598 20 C -0.146 4.146 21 C -0.094 4.094 22 C -0.120 4.120 23 H 0.396 0.604 24 H 0.105 0.895 25 H -0.283 1.283 26 H -0.303 1.303 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.165 0.835 31 H 0.417 0.583 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.159 0.841 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 5.450 3.391 7.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.189 4.189 3 Si 0.686 3.314 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.040 4.040 9 C -0.229 4.229 10 C 0.334 3.666 11 O -0.475 6.475 12 N -0.346 5.346 13 C 0.004 3.996 14 H 0.102 0.898 15 C -0.160 4.160 16 C -0.126 4.126 17 H 0.114 0.886 18 C 0.003 3.997 19 O -0.407 6.407 20 C -0.185 4.185 21 C -0.112 4.112 22 C -0.137 4.137 23 H 0.246 0.754 24 H 0.122 0.878 25 H -0.209 1.209 26 H -0.231 1.231 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.139 0.861 30 H 0.183 0.817 31 H 0.255 0.745 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.155 4.893 1.977 6.148 hybrid contribution 0.229 -0.624 0.214 0.699 sum 3.384 4.269 2.190 5.871 Atomic orbital electron populations 1.86480 1.17221 1.82213 1.50518 1.25272 0.85337 1.11149 0.97140 0.93724 0.77859 0.74939 0.84853 1.20622 0.98826 0.94891 0.96947 1.21080 0.99392 0.94284 0.97892 1.21610 0.96499 1.00679 0.93333 1.19109 1.00130 0.94348 0.94550 1.22368 0.91232 0.99548 0.90807 1.22995 1.03674 1.02191 0.94013 1.18794 0.77492 0.86310 0.84007 1.90812 1.59233 1.17595 1.79839 1.45459 1.55454 1.13734 1.19933 1.21914 0.95994 0.97414 0.84248 0.89754 1.23265 0.95400 0.98815 0.98489 1.22577 0.96982 0.97971 0.95066 0.88642 1.22288 0.91714 0.93548 0.92196 1.86440 1.53128 1.70728 1.30398 1.23525 0.98611 0.98759 0.97566 1.21676 0.98431 0.93146 0.97943 1.21183 0.98331 1.00412 0.93783 0.75435 0.87759 1.20945 1.23138 0.85413 0.84655 0.86054 0.81725 0.74502 0.89076 0.87286 0.92748 0.92192 0.75477 0.88918 0.92519 0.82388 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.04 12.83 -148.98 -1.91 -1.88 16 2 C -0.08 0.10 2.80 71.24 0.20 0.29 16 3 Si 0.78 -2.70 29.78 68.60 2.04 -0.66 16 4 C -0.11 0.10 5.36 -19.79 -0.11 0.00 16 5 C -0.11 -0.10 9.66 22.23 0.21 0.11 16 6 C -0.10 -0.09 9.80 22.57 0.22 0.13 16 7 C -0.08 0.00 5.87 -20.15 -0.12 -0.11 16 8 C -0.02 -0.03 9.46 23.84 0.23 0.20 16 9 C -0.21 0.18 9.41 23.62 0.22 0.40 16 10 C 0.54 2.71 7.74 86.38 0.67 3.38 16 11 O -0.59 -8.63 15.83 -4.33 -0.07 -8.70 16 12 N -0.70 0.56 5.26 -443.82 -2.33 -1.78 16 13 C 0.11 0.03 4.33 45.61 0.20 0.22 16 14 H 0.08 0.41 7.46 -2.39 -0.02 0.39 16 15 C -0.12 0.65 7.39 31.12 0.23 0.88 16 16 C -0.11 0.32 3.88 -10.26 -0.04 0.28 16 17 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 18 C 0.08 -0.27 6.87 71.98 0.49 0.23 16 19 O -0.60 -0.19 13.66 -148.98 -2.03 -2.22 16 20 C -0.15 -0.07 7.45 31.21 0.23 0.16 16 21 C -0.09 0.35 9.41 22.58 0.21 0.56 16 22 C -0.12 0.46 8.65 22.23 0.19 0.65 16 23 H 0.40 -3.26 8.70 -74.06 -0.64 -3.91 16 24 H 0.10 0.04 7.96 -2.39 -0.02 0.02 16 25 H -0.28 -0.23 7.11 99.48 0.71 0.47 16 26 H -0.30 -1.43 7.11 99.48 0.71 -0.73 16 27 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 28 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 29 H 0.12 0.53 7.52 -2.91 -0.02 0.51 16 30 H 0.17 -1.41 6.07 -2.91 -0.02 -1.43 16 31 H 0.42 -3.01 8.68 -92.71 -0.80 -3.82 16 32 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.11 -0.78 8.10 -2.38 -0.02 -0.80 16 34 H 0.05 -0.25 7.88 -2.39 -0.02 -0.27 16 35 H 0.06 -0.35 8.14 -2.38 -0.02 -0.37 16 36 H 0.40 -3.11 9.12 -74.06 -0.68 -3.79 16 37 H 0.09 0.00 7.92 -2.39 -0.02 -0.02 16 38 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.16 -1.53 6.17 -2.91 -0.02 -1.54 16 40 H 0.15 -1.33 4.88 -2.91 -0.01 -1.35 16 Total: 0.00 -23.10 338.80 -2.26 -25.36 By element: Atomic # 1 Polarization: -16.53 SS G_CDS: -1.00 Total: -17.53 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 3.05 Total: 7.40 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -2.33 Total: -1.78 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -4.02 Total: -12.80 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.04 Total: -0.66 kcal Total: -23.10 -2.26 -25.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_12360594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.887 kcal (2) G-P(sol) polarization free energy of solvation -23.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds