Wall clock time and date at job start Sat Mar 6 2021 21:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47225 * 2 1 4 4 C 1.50705 * 109.47046 * 120.00122 * 2 1 3 5 5 C 1.34828 * 125.65419 * 65.02512 * 4 2 1 6 6 C 1.40797 * 107.05339 * 179.97438 * 5 4 2 7 7 C 1.36115 * 106.72767 * 0.02562 * 6 5 4 8 8 C 1.47570 * 125.94235 * 179.97438 * 7 6 5 9 9 C 1.39933 * 119.95316 * 0.02562 * 8 7 6 10 10 C 1.36422 * 120.27439 * 180.02562 * 9 8 7 11 11 C 1.39884 * 120.18640 * 359.97438 * 10 9 8 12 12 C 1.47292 * 120.04116 * 180.02562 * 11 10 9 13 13 O 1.21627 * 119.99567 * 180.02562 * 12 11 10 14 14 N 1.34779 * 120.00679 * 359.97438 * 12 11 10 15 15 C 1.46496 * 120.00153 * 180.02562 * 14 12 11 16 16 H 1.08997 * 112.85063 * 336.19741 * 15 14 12 17 17 C 1.53785 * 113.61328 * 107.50383 * 15 14 12 18 18 C 1.53781 * 87.08074 * 89.11403 * 17 15 14 19 19 H 1.09003 * 113.61643 * 270.88491 * 18 17 15 20 20 C 1.52997 * 113.69218 * 139.99271 * 18 17 15 21 21 O 1.42899 * 109.47232 * 87.46073 * 20 18 17 22 22 C 1.53784 * 113.61027 * 205.00061 * 15 14 12 23 23 C 1.40400 * 119.90640 * 359.97438 * 11 10 9 24 24 O 1.35679 * 120.13383 * 180.02562 * 23 11 10 25 25 C 1.38277 * 119.72822 * 359.75046 * 23 11 10 26 26 O 1.34228 * 125.65111 * 244.97509 * 4 2 1 27 27 H 0.96702 * 113.99822 * 60.00418 * 1 2 3 28 28 H 1.09000 * 109.46997 * 239.99780 * 2 1 3 29 29 H 1.48502 * 110.00060 * 59.99963 * 3 2 1 30 30 H 1.48505 * 109.99625 * 181.32032 * 3 2 1 31 31 H 1.08000 * 126.47921 * 359.95956 * 5 4 2 32 32 H 1.07994 * 126.63968 * 180.26218 * 6 5 4 33 33 H 1.07994 * 119.86060 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.90783 * 179.97438 * 10 9 8 35 35 H 0.96999 * 119.99458 * 0.02562 * 14 12 11 36 36 H 1.08998 * 113.61539 * 203.65886 * 17 15 14 37 37 H 1.08998 * 113.61363 * 334.56832 * 17 15 14 38 38 H 1.09007 * 109.47479 * 207.46693 * 20 18 17 39 39 H 1.09005 * 109.47184 * 327.45976 * 20 18 17 40 40 H 0.96703 * 113.99652 * 179.97438 * 21 20 18 41 41 H 1.08994 * 113.61883 * 25.43431 * 22 15 14 42 42 H 1.08999 * 113.60912 * 156.25640 * 22 15 14 43 43 H 0.96696 * 114.00151 * 89.99932 * 24 23 11 44 44 H 1.07999 * 120.09311 * 180.27102 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7571 -2.0181 1.5091 6 6 2.3812 -2.2631 2.7472 7 6 2.9077 -1.0784 3.1618 8 6 3.6564 -0.8540 4.4136 9 6 3.8780 -1.9177 5.2954 10 6 4.5688 -1.7175 6.4546 11 6 5.0612 -0.4466 6.7695 12 6 5.8071 -0.2342 8.0217 13 8 6.2344 0.8713 8.2949 14 7 6.0153 -1.2645 8.8653 15 6 6.7567 -1.0530 10.1109 16 1 7.4221 -0.1909 10.0663 17 6 5.8713 -1.0858 11.3679 18 6 6.1255 -2.6018 11.4116 19 1 5.4013 -3.1826 10.8403 20 6 6.3437 -3.1482 12.8239 21 8 5.0819 -3.4816 13.4059 22 6 7.4322 -2.3254 10.6493 23 6 4.8442 0.6259 5.8898 24 8 5.3201 1.8604 6.1903 25 6 4.1484 0.4176 4.7131 26 8 2.6271 -0.1465 2.2303 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5139 -0.8900 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7701 -0.0322 31 1 1.2370 -2.7410 0.8982 32 1 2.4354 -3.2090 3.2656 33 1 3.4999 -2.9009 5.0576 34 1 4.7361 -2.5426 7.1311 35 1 5.6742 -2.1461 8.6475 36 1 6.2959 -0.5474 12.2152 37 1 4.8311 -0.8228 11.1762 38 1 6.9688 -4.0399 12.7761 39 1 6.8366 -2.3913 13.4342 40 1 5.1441 -3.8355 14.3037 41 1 7.6520 -3.0630 9.8776 42 1 8.2843 -2.1257 11.2990 43 1 6.2132 2.0288 5.8602 44 1 3.9820 1.2374 4.0300 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13270474_12807986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:01 Heat of formation + Delta-G solvation = -77.619330 kcal Electronic energy + Delta-G solvation = -29140.694476 eV Core-core repulsion = 24799.948840 eV Total energy + Delta-G solvation = -4340.745636 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.76547 -41.71986 -40.62585 -39.06056 -38.05663 -37.82361 -37.25590 -34.63935 -34.19812 -33.21351 -31.37276 -30.61000 -28.89605 -27.02520 -26.79048 -24.66436 -24.11057 -23.47527 -22.49048 -22.02529 -21.35205 -20.34551 -19.63997 -18.80484 -18.75851 -18.28832 -18.00781 -17.34331 -17.07164 -16.74481 -16.54544 -16.23901 -15.98693 -15.93919 -15.87207 -15.61513 -15.26831 -15.00862 -14.62470 -14.47179 -14.21787 -14.09722 -13.93593 -13.69569 -13.57797 -13.56412 -13.41931 -13.09792 -12.77683 -12.71016 -12.09795 -11.92639 -11.85488 -11.67978 -11.46497 -11.15008 -10.89798 -10.79450 -10.72661 -10.50877 -10.07781 -9.98293 -9.03283 -5.14067 -0.81244 0.08342 0.61825 1.09076 1.35812 1.53728 1.63612 1.95421 1.99018 2.01391 2.61417 2.97362 3.07222 3.19634 3.37497 3.48481 3.56874 3.57379 3.60187 3.74315 3.79013 3.88174 3.91749 4.00377 4.10186 4.19831 4.29234 4.34673 4.42729 4.49167 4.54171 4.60578 4.64174 4.65725 4.71602 4.77087 4.82747 4.96342 5.01253 5.02863 5.07208 5.11968 5.15267 5.36323 5.43193 5.55462 5.95334 6.41638 6.43085 6.63062 6.66655 7.20549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.036 4.036 3 Si 0.706 3.294 4 C -0.002 4.002 5 C -0.168 4.168 6 C -0.175 4.175 7 C 0.021 3.979 8 C 0.031 3.969 9 C -0.115 4.115 10 C -0.063 4.063 11 C -0.165 4.165 12 C 0.562 3.438 13 O -0.515 6.515 14 N -0.711 5.711 15 C 0.120 3.880 16 H 0.107 0.893 17 C -0.144 4.144 18 C -0.112 4.112 19 H 0.096 0.904 20 C 0.084 3.916 21 O -0.574 6.574 22 C -0.138 4.138 23 C 0.180 3.820 24 O -0.474 6.474 25 C -0.142 4.142 26 O -0.169 6.169 27 H 0.391 0.609 28 H 0.096 0.904 29 H -0.248 1.248 30 H -0.252 1.252 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.399 0.601 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.381 0.619 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.399 0.601 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -4.510 -3.653 5.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.145 4.145 3 Si 0.605 3.395 4 C -0.052 4.052 5 C -0.187 4.187 6 C -0.194 4.194 7 C -0.028 4.028 8 C 0.031 3.969 9 C -0.133 4.133 10 C -0.082 4.082 11 C -0.169 4.169 12 C 0.350 3.650 13 O -0.391 6.391 14 N -0.363 5.363 15 C 0.015 3.985 16 H 0.125 0.875 17 C -0.182 4.182 18 C -0.130 4.130 19 H 0.114 0.886 20 C 0.006 3.994 21 O -0.380 6.380 22 C -0.176 4.176 23 C 0.133 3.867 24 O -0.285 6.285 25 C -0.161 4.161 26 O -0.066 6.066 27 H 0.240 0.760 28 H 0.114 0.886 29 H -0.172 1.172 30 H -0.177 1.177 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.235 0.765 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.228 0.772 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.257 0.743 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.660 -2.806 -2.760 4.272 hybrid contribution 0.365 -1.547 0.399 1.639 sum 2.025 -4.353 -2.360 5.350 Atomic orbital electron populations 1.86468 1.16302 1.81993 1.50262 1.23796 0.86212 1.11705 0.92812 0.95279 0.80976 0.76222 0.87037 1.21462 1.00145 0.92645 0.90964 1.21554 1.03556 0.95640 0.97978 1.21914 1.01813 0.98331 0.97306 1.20353 1.04096 0.87572 0.90786 1.17767 0.95394 0.93777 0.89997 1.20702 1.00176 0.98714 0.93729 1.20821 0.95484 0.95494 0.96382 1.20465 1.04735 0.94310 0.97362 1.17949 0.79607 0.84474 0.83016 1.90847 1.49680 1.23285 1.75299 1.45572 1.57556 1.12191 1.21026 1.21822 0.94212 0.99303 0.83156 0.87493 1.23485 1.01308 0.95508 0.97934 1.22612 0.98204 0.96834 0.95397 0.88564 1.22191 0.85361 0.98356 0.93467 1.86493 1.30410 1.86621 1.34439 1.23342 0.97193 0.97309 0.99779 1.18261 0.93856 0.84110 0.90439 1.84779 1.36324 1.27544 1.79860 1.21571 1.00482 0.97069 0.96981 1.83957 1.58056 1.38133 1.26503 0.76002 0.88601 1.17221 1.17662 0.82442 0.82345 0.84213 0.84525 0.76491 0.88907 0.90759 0.93476 0.93317 0.77230 0.90392 0.88261 0.74260 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.17 12.86 -35.23 -0.45 -0.28 16 2 C -0.04 0.01 2.97 36.01 0.11 0.12 16 3 Si 0.71 -0.52 32.11 -169.99 -5.46 -5.97 16 4 C 0.00 -0.01 6.24 -35.51 -0.22 -0.23 16 5 C -0.17 -0.34 10.78 -39.82 -0.43 -0.77 16 6 C -0.17 -0.27 10.26 -39.38 -0.40 -0.68 16 7 C 0.02 0.07 7.02 -36.54 -0.26 -0.19 16 8 C 0.03 0.07 5.87 -104.95 -0.62 -0.55 16 9 C -0.12 0.03 9.49 -39.60 -0.38 -0.34 16 10 C -0.06 0.04 9.47 -39.62 -0.38 -0.34 16 11 C -0.17 -0.35 5.89 -104.79 -0.62 -0.96 16 12 C 0.56 1.82 7.75 -12.58 -0.10 1.72 16 13 O -0.52 -3.51 14.74 -16.70 -0.25 -3.75 16 14 N -0.71 -0.16 5.21 -54.13 -0.28 -0.44 16 15 C 0.12 0.02 4.32 -67.12 -0.29 -0.27 16 16 H 0.11 0.17 7.46 -51.93 -0.39 -0.21 16 17 C -0.14 -0.05 7.43 -25.92 -0.19 -0.24 16 18 C -0.11 0.10 3.88 -89.81 -0.35 -0.25 16 19 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 20 C 0.08 -0.08 6.89 37.16 0.26 0.17 16 21 O -0.57 -0.41 13.66 -35.23 -0.48 -0.89 16 22 C -0.14 0.29 7.39 -25.91 -0.19 0.10 16 23 C 0.18 0.57 6.71 -38.75 -0.26 0.31 16 24 O -0.47 -1.79 11.56 -40.69 -0.47 -2.26 16 25 C -0.14 -0.40 9.65 -39.06 -0.38 -0.77 16 26 O -0.17 -0.74 8.79 4.75 0.04 -0.70 16 27 H 0.39 -2.29 8.74 45.56 0.40 -1.89 16 28 H 0.10 -0.28 7.96 -51.93 -0.41 -0.69 16 29 H -0.25 -0.84 7.11 56.52 0.40 -0.44 16 30 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 31 H 0.16 0.02 8.06 -52.49 -0.42 -0.40 16 32 H 0.16 -0.21 7.24 -52.49 -0.38 -0.59 16 33 H 0.14 -0.39 6.95 -52.49 -0.36 -0.75 16 34 H 0.14 -0.52 6.38 -52.49 -0.33 -0.86 16 35 H 0.40 -0.94 6.71 -40.82 -0.27 -1.21 16 36 H 0.09 -0.01 7.90 -51.93 -0.41 -0.42 16 37 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 38 H 0.05 -0.09 8.14 -51.93 -0.42 -0.52 16 39 H 0.05 -0.08 7.85 -51.93 -0.41 -0.49 16 40 H 0.38 -1.30 9.12 45.56 0.42 -0.88 16 41 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 42 H 0.10 -0.29 8.10 -51.93 -0.42 -0.71 16 43 H 0.40 -0.07 9.06 45.56 0.41 0.34 16 44 H 0.14 0.38 7.90 -52.49 -0.41 -0.03 16 LS Contribution 377.14 15.07 5.68 5.68 Total: 0.00 -12.84 377.14 -10.25 -23.08 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: -3.89 Total: -11.29 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -4.69 Total: -3.18 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -0.28 Total: -0.44 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -1.61 Total: -7.88 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: -5.46 Total: -5.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -12.84 -10.25 -23.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_12807986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.536 kcal (2) G-P(sol) polarization free energy of solvation -12.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds