Wall clock time and date at job start Sat Mar 6 2021 21:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47225 * 2 1 4 4 C 1.50705 * 109.47046 * 120.00122 * 2 1 3 5 5 C 1.34828 * 125.65419 * 65.02512 * 4 2 1 6 6 C 1.40797 * 107.05339 * 179.97438 * 5 4 2 7 7 C 1.36115 * 106.72767 * 0.02562 * 6 5 4 8 8 C 1.47570 * 125.94235 * 179.97438 * 7 6 5 9 9 C 1.39933 * 119.95316 * 0.02562 * 8 7 6 10 10 C 1.36422 * 120.27439 * 180.02562 * 9 8 7 11 11 C 1.39884 * 120.18640 * 359.97438 * 10 9 8 12 12 C 1.47292 * 120.04116 * 180.02562 * 11 10 9 13 13 O 1.21627 * 119.99567 * 180.02562 * 12 11 10 14 14 N 1.34779 * 120.00679 * 359.97438 * 12 11 10 15 15 C 1.46496 * 120.00153 * 180.02562 * 14 12 11 16 16 H 1.08997 * 112.85063 * 336.19741 * 15 14 12 17 17 C 1.53785 * 113.61328 * 107.50383 * 15 14 12 18 18 C 1.53781 * 87.08074 * 89.11403 * 17 15 14 19 19 H 1.09003 * 113.61643 * 270.88491 * 18 17 15 20 20 C 1.52997 * 113.69218 * 139.99271 * 18 17 15 21 21 O 1.42899 * 109.47232 * 87.46073 * 20 18 17 22 22 C 1.53784 * 113.61027 * 205.00061 * 15 14 12 23 23 C 1.40400 * 119.90640 * 359.97438 * 11 10 9 24 24 O 1.35679 * 120.13383 * 180.02562 * 23 11 10 25 25 C 1.38277 * 119.72822 * 359.75046 * 23 11 10 26 26 O 1.34228 * 125.65111 * 244.97509 * 4 2 1 27 27 H 0.96702 * 113.99822 * 60.00418 * 1 2 3 28 28 H 1.09000 * 109.46997 * 239.99780 * 2 1 3 29 29 H 1.48502 * 110.00060 * 59.99963 * 3 2 1 30 30 H 1.48505 * 109.99625 * 181.32032 * 3 2 1 31 31 H 1.08000 * 126.47921 * 359.95956 * 5 4 2 32 32 H 1.07994 * 126.63968 * 180.26218 * 6 5 4 33 33 H 1.07994 * 119.86060 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.90783 * 179.97438 * 10 9 8 35 35 H 0.96999 * 119.99458 * 0.02562 * 14 12 11 36 36 H 1.08998 * 113.61539 * 203.65886 * 17 15 14 37 37 H 1.08998 * 113.61363 * 334.56832 * 17 15 14 38 38 H 1.09007 * 109.47479 * 207.46693 * 20 18 17 39 39 H 1.09005 * 109.47184 * 327.45976 * 20 18 17 40 40 H 0.96703 * 113.99652 * 179.97438 * 21 20 18 41 41 H 1.08994 * 113.61883 * 25.43431 * 22 15 14 42 42 H 1.08999 * 113.60912 * 156.25640 * 22 15 14 43 43 H 0.96696 * 114.00151 * 89.99932 * 24 23 11 44 44 H 1.07999 * 120.09311 * 180.27102 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7571 -2.0181 1.5091 6 6 2.3812 -2.2631 2.7472 7 6 2.9077 -1.0784 3.1618 8 6 3.6564 -0.8540 4.4136 9 6 3.8780 -1.9177 5.2954 10 6 4.5688 -1.7175 6.4546 11 6 5.0612 -0.4466 6.7695 12 6 5.8071 -0.2342 8.0217 13 8 6.2344 0.8713 8.2949 14 7 6.0153 -1.2645 8.8653 15 6 6.7567 -1.0530 10.1109 16 1 7.4221 -0.1909 10.0663 17 6 5.8713 -1.0858 11.3679 18 6 6.1255 -2.6018 11.4116 19 1 5.4013 -3.1826 10.8403 20 6 6.3437 -3.1482 12.8239 21 8 5.0819 -3.4816 13.4059 22 6 7.4322 -2.3254 10.6493 23 6 4.8442 0.6259 5.8898 24 8 5.3201 1.8604 6.1903 25 6 4.1484 0.4176 4.7131 26 8 2.6271 -0.1465 2.2303 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5139 -0.8900 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7701 -0.0322 31 1 1.2370 -2.7410 0.8982 32 1 2.4354 -3.2090 3.2656 33 1 3.4999 -2.9009 5.0576 34 1 4.7361 -2.5426 7.1311 35 1 5.6742 -2.1461 8.6475 36 1 6.2959 -0.5474 12.2152 37 1 4.8311 -0.8228 11.1762 38 1 6.9688 -4.0399 12.7761 39 1 6.8366 -2.3913 13.4342 40 1 5.1441 -3.8355 14.3037 41 1 7.6520 -3.0630 9.8776 42 1 8.2843 -2.1257 11.2990 43 1 6.2132 2.0288 5.8602 44 1 3.9820 1.2374 4.0300 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_12807986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:00 Heat of formation + Delta-G solvation = -84.145686 kcal Electronic energy + Delta-G solvation = -29140.977480 eV Core-core repulsion = 24799.948840 eV Total energy + Delta-G solvation = -4341.028640 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.89299 -41.84715 -40.66370 -39.21139 -38.12981 -37.84512 -37.23789 -34.79999 -34.32035 -33.28032 -31.47162 -30.67369 -28.86112 -27.07643 -26.72796 -24.73951 -24.18533 -23.47235 -22.59813 -22.14726 -21.46457 -20.37340 -19.75464 -18.92166 -18.70198 -18.22781 -18.13219 -17.43562 -17.20647 -16.81190 -16.62369 -16.32119 -16.09269 -15.95898 -15.89133 -15.65892 -15.41033 -15.00710 -14.62590 -14.48211 -14.34922 -14.22199 -14.01768 -13.75763 -13.64156 -13.50237 -13.44457 -13.09653 -12.84935 -12.74594 -12.27623 -12.05239 -11.80769 -11.66991 -11.42624 -11.26971 -11.05656 -10.82084 -10.79638 -10.46889 -10.17940 -10.08773 -9.13986 -5.15614 -0.93142 0.00272 0.49726 1.11167 1.28235 1.47931 1.57909 1.79267 1.92444 1.95727 2.51180 2.87577 3.16980 3.21077 3.42238 3.46396 3.53382 3.66470 3.68452 3.69602 3.81184 3.86729 3.87975 4.06145 4.11674 4.23908 4.32968 4.38925 4.50118 4.55125 4.56578 4.63116 4.65782 4.70497 4.74009 4.77288 4.81387 4.92910 4.97177 5.00022 5.07591 5.09781 5.15880 5.32800 5.40686 5.53515 5.83877 6.37545 6.56587 6.80480 6.88103 7.06636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.035 4.035 3 Si 0.800 3.200 4 C -0.030 4.030 5 C -0.175 4.175 6 C -0.166 4.166 7 C -0.006 4.006 8 C 0.024 3.976 9 C -0.106 4.106 10 C -0.047 4.047 11 C -0.178 4.178 12 C 0.559 3.441 13 O -0.562 6.562 14 N -0.695 5.695 15 C 0.112 3.888 16 H 0.088 0.912 17 C -0.148 4.148 18 C -0.108 4.108 19 H 0.096 0.904 20 C 0.080 3.920 21 O -0.599 6.599 22 C -0.119 4.119 23 C 0.163 3.837 24 O -0.495 6.495 25 C -0.161 4.161 26 O -0.197 6.197 27 H 0.414 0.586 28 H 0.131 0.869 29 H -0.313 1.313 30 H -0.295 1.295 31 H 0.178 0.822 32 H 0.191 0.809 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.414 0.586 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.396 0.604 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.409 0.591 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -7.835 -4.020 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.145 4.145 3 Si 0.707 3.293 4 C -0.080 4.080 5 C -0.194 4.194 6 C -0.184 4.184 7 C -0.055 4.055 8 C 0.024 3.976 9 C -0.124 4.124 10 C -0.066 4.066 11 C -0.181 4.181 12 C 0.347 3.653 13 O -0.441 6.441 14 N -0.347 5.347 15 C 0.006 3.994 16 H 0.106 0.894 17 C -0.187 4.187 18 C -0.127 4.127 19 H 0.114 0.886 20 C 0.003 3.997 21 O -0.408 6.408 22 C -0.157 4.157 23 C 0.116 3.884 24 O -0.308 6.308 25 C -0.179 4.179 26 O -0.096 6.096 27 H 0.267 0.733 28 H 0.148 0.852 29 H -0.242 1.242 30 H -0.222 1.222 31 H 0.195 0.805 32 H 0.208 0.792 33 H 0.192 0.808 34 H 0.193 0.807 35 H 0.253 0.747 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.245 0.755 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.269 0.731 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.400 -6.181 -3.155 7.079 hybrid contribution 0.419 -0.478 0.566 0.851 sum 1.818 -6.659 -2.589 7.372 Atomic orbital electron populations 1.86414 1.16043 1.82513 1.52176 1.23912 0.86520 1.11226 0.92817 0.94470 0.76973 0.74240 0.83635 1.22236 1.00347 0.93775 0.91594 1.21915 1.03440 0.95598 0.98404 1.22333 1.00259 0.98804 0.97021 1.20730 1.05339 0.88171 0.91212 1.18008 0.95247 0.94018 0.90369 1.21080 0.99175 0.99325 0.92825 1.21212 0.93632 0.95132 0.96598 1.20515 1.05523 0.95268 0.96834 1.18181 0.79211 0.84342 0.83548 1.90819 1.51755 1.25155 1.76393 1.45449 1.56668 1.12194 1.20419 1.21897 0.94320 1.00210 0.82957 0.89424 1.23509 1.00000 0.97058 0.98122 1.22592 0.98739 0.95400 0.95932 0.88614 1.22290 0.85030 0.99177 0.93226 1.86445 1.31565 1.86912 1.35850 1.23273 0.96864 0.95822 0.99767 1.18444 0.94573 0.84279 0.91070 1.84729 1.37344 1.28506 1.80254 1.21498 1.01793 0.97575 0.97057 1.83953 1.58854 1.39416 1.27419 0.73280 0.85184 1.24174 1.22225 0.80485 0.79201 0.80776 0.80684 0.74733 0.88750 0.92840 0.92001 0.92754 0.75477 0.88823 0.87036 0.73086 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.82 12.86 -148.98 -1.92 -1.09 16 2 C -0.04 0.03 2.97 71.24 0.21 0.25 16 3 Si 0.80 0.07 32.11 68.60 2.20 2.27 16 4 C -0.03 -0.19 6.24 24.90 0.16 -0.03 16 5 C -0.17 -0.54 10.78 22.11 0.24 -0.30 16 6 C -0.17 -0.32 10.26 22.40 0.23 -0.09 16 7 C -0.01 -0.04 7.02 24.24 0.17 0.13 16 8 C 0.02 0.12 5.87 -20.08 -0.12 0.00 16 9 C -0.11 0.22 9.49 22.26 0.21 0.43 16 10 C -0.05 0.12 9.47 22.24 0.21 0.34 16 11 C -0.18 -0.91 5.89 -19.97 -0.12 -1.03 16 12 C 0.56 4.34 7.75 86.62 0.67 5.01 16 13 O -0.56 -9.17 14.74 16.87 0.25 -8.93 16 14 N -0.69 -0.25 5.21 -443.41 -2.31 -2.56 16 15 C 0.11 0.07 4.32 45.52 0.20 0.26 16 16 H 0.09 0.42 7.46 -2.39 -0.02 0.41 16 17 C -0.15 -0.18 7.43 31.12 0.23 0.05 16 18 C -0.11 0.31 3.88 -10.27 -0.04 0.27 16 19 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 20 C 0.08 -0.26 6.89 71.98 0.50 0.24 16 21 O -0.60 -0.43 13.66 -148.98 -2.04 -2.46 16 22 C -0.12 0.67 7.39 31.12 0.23 0.90 16 23 C 0.16 1.47 6.71 22.81 0.15 1.62 16 24 O -0.50 -5.59 11.56 -68.98 -0.80 -6.38 16 25 C -0.16 -1.36 9.65 22.61 0.22 -1.14 16 26 O -0.20 -2.12 8.79 -5.92 -0.05 -2.17 16 27 H 0.41 -5.41 8.74 -74.06 -0.65 -6.06 16 28 H 0.13 -1.01 7.96 -2.39 -0.02 -1.03 16 29 H -0.31 -3.36 7.11 99.48 0.71 -2.66 16 30 H -0.29 -2.00 7.11 99.48 0.71 -1.29 16 31 H 0.18 -0.30 8.06 -2.91 -0.02 -0.33 16 32 H 0.19 -1.09 7.24 -2.91 -0.02 -1.11 16 33 H 0.17 -1.60 6.95 -2.91 -0.02 -1.62 16 34 H 0.18 -1.92 6.38 -2.91 -0.02 -1.94 16 35 H 0.41 -2.61 6.71 -92.71 -0.62 -3.23 16 36 H 0.09 0.05 7.90 -2.39 -0.02 0.03 16 37 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.06 -0.37 8.14 -2.38 -0.02 -0.39 16 39 H 0.05 -0.24 7.85 -2.38 -0.02 -0.26 16 40 H 0.40 -2.95 9.12 -74.05 -0.68 -3.63 16 41 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.11 -0.85 8.10 -2.39 -0.02 -0.87 16 43 H 0.41 1.49 9.06 -74.06 -0.67 0.82 16 44 H 0.12 1.28 7.90 -2.91 -0.02 1.25 16 Total: 0.00 -34.34 377.14 -2.79 -37.13 By element: Atomic # 1 Polarization: -21.23 SS G_CDS: -1.48 Total: -22.71 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 3.35 Total: 6.90 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -2.31 Total: -2.56 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -4.55 Total: -21.03 kcal Atomic # 14 Polarization: 0.07 SS G_CDS: 2.20 Total: 2.27 kcal Total: -34.34 -2.79 -37.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_12807986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.011 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds