Wall clock time and date at job start Sat Mar 6 2021 21:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47309 * 2 1 4 4 C 1.50703 * 109.47464 * 120.00035 * 2 1 3 5 5 C 1.38341 * 119.87144 * 245.29997 * 4 2 1 6 6 C 1.37999 * 120.12317 * 180.25838 * 5 4 2 7 7 C 1.39407 * 119.87420 * 359.43918 * 6 5 4 8 8 C 1.48276 * 120.12874 * 180.25876 * 7 6 5 9 9 C 1.39499 * 119.97378 * 359.72581 * 8 7 6 10 10 C 1.37670 * 120.02485 * 179.76270 * 9 8 7 11 11 C 1.39708 * 119.97332 * 0.51097 * 10 9 8 12 12 C 1.47716 * 120.02511 * 179.71650 * 11 10 9 13 13 O 1.21574 * 120.00020 * 180.02562 * 12 11 10 14 14 N 1.34771 * 120.00142 * 0.02562 * 12 11 10 15 15 C 1.46503 * 120.00085 * 179.97438 * 14 12 11 16 16 H 1.08993 * 112.85148 * 334.66734 * 15 14 12 17 17 C 1.53784 * 113.61285 * 105.86732 * 15 14 12 18 18 C 1.54055 * 86.98653 * 89.15938 * 17 15 14 19 19 H 1.08993 * 113.60860 * 270.88340 * 18 17 15 20 20 C 1.53000 * 113.69042 * 139.99270 * 18 17 15 21 21 O 1.42900 * 109.47336 * 87.46744 * 20 18 17 22 22 C 1.53772 * 87.07589 * 25.43206 * 18 17 15 23 23 C 1.39713 * 119.95030 * 359.74425 * 11 10 9 24 24 C 1.37666 * 119.97554 * 359.97438 * 23 11 10 25 25 C 1.39408 * 119.74207 * 0.28182 * 7 6 5 26 26 C 1.37996 * 119.87250 * 359.97438 * 25 7 6 27 27 H 0.96704 * 113.99667 * 300.00145 * 1 2 3 28 28 H 1.09001 * 109.47138 * 239.99780 * 2 1 3 29 29 H 1.48498 * 109.99902 * 300.00243 * 3 2 1 30 30 H 1.48498 * 110.00154 * 61.31756 * 3 2 1 31 31 H 1.07998 * 119.93656 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.06557 * 179.72188 * 6 5 4 33 33 H 1.07999 * 119.99042 * 359.97438 * 9 8 7 34 34 H 1.07996 * 120.01717 * 180.25376 * 10 9 8 35 35 H 0.97003 * 120.00105 * 0.02562 * 14 12 11 36 36 H 1.08996 * 113.61537 * 203.66794 * 17 15 14 37 37 H 1.09007 * 113.61183 * 334.56760 * 17 15 14 38 38 H 1.09004 * 109.46413 * 207.46886 * 20 18 17 39 39 H 1.09004 * 109.47424 * 327.46237 * 20 18 17 40 40 H 0.96700 * 113.99683 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.61697 * 220.01897 * 22 18 17 42 42 H 1.09006 * 113.69335 * 89.12886 * 22 18 17 43 43 H 1.07993 * 120.01120 * 180.02562 * 23 11 10 44 44 H 1.07998 * 119.98598 * 179.97438 * 24 23 11 45 45 H 1.08002 * 120.05783 * 180.02562 * 25 7 6 46 46 H 1.08004 * 119.93677 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6337 -0.0078 2.1932 6 6 3.1008 -0.6543 3.3194 7 6 2.8536 -2.0154 3.4915 8 6 3.3478 -2.7144 4.7021 9 6 4.0666 -2.0106 5.6686 10 6 4.5218 -2.6575 6.7954 11 6 4.2729 -4.0216 6.9657 12 6 4.7662 -4.7181 8.1713 13 8 4.5497 -5.9053 8.3187 14 7 5.4563 -4.0376 9.1077 15 6 5.9450 -4.7284 10.3037 16 1 5.3572 -5.6119 10.5521 17 6 7.4620 -4.9807 10.2926 18 6 7.6142 -3.6015 10.9619 19 1 7.7068 -2.7796 10.2520 20 6 8.6821 -3.5640 12.0569 21 8 9.9525 -3.2681 11.4734 22 6 6.1864 -3.7927 11.5000 23 6 3.5575 -4.7266 5.9945 24 6 3.0982 -4.0764 4.8713 25 6 2.1403 -2.7169 2.5207 26 6 1.6827 -2.0611 1.3960 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5139 -0.8900 29 1 1.5615 2.4679 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 2.8207 1.0476 2.0610 32 1 3.6528 -0.1058 4.0683 33 1 4.2632 -0.9571 5.5345 34 1 5.0748 -2.1116 7.5455 35 1 5.6287 -3.0903 8.9903 36 1 7.7712 -5.8107 10.9277 37 1 7.8889 -5.0309 9.2909 38 1 8.4285 -2.7938 12.7854 39 1 8.7272 -4.5332 12.5538 40 1 10.6784 -3.2281 12.1111 41 1 5.5842 -2.8846 11.4726 42 1 6.1461 -4.2983 12.4649 43 1 3.3641 -5.7810 6.1253 44 1 2.5456 -4.6213 4.1203 45 1 1.9455 -3.7714 2.6490 46 1 1.1296 -2.6035 0.6434 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_13158362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:06 Heat of formation + Delta-G solvation = -35.543571 kcal Electronic energy + Delta-G solvation = -27500.627881 eV Core-core repulsion = 23515.307411 eV Total energy + Delta-G solvation = -3985.320470 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68027 -40.92472 -39.99996 -39.03125 -37.64914 -37.24429 -34.74923 -33.81809 -32.57300 -31.58920 -30.87516 -28.83340 -26.99053 -26.71783 -24.75702 -24.63526 -23.42582 -22.56181 -22.44667 -21.39763 -20.32273 -19.28564 -18.59073 -18.20948 -17.77473 -17.32814 -16.85163 -16.56056 -16.27979 -16.18851 -15.99359 -15.83287 -15.61626 -15.41340 -15.23117 -14.95532 -14.88900 -14.57537 -14.35628 -14.26856 -13.97491 -13.60143 -13.52923 -13.43007 -13.21303 -13.04635 -12.79289 -12.60609 -12.06425 -11.94840 -11.81172 -11.67279 -11.52550 -11.41073 -11.16431 -10.78971 -10.78041 -10.58894 -10.16433 -10.08099 -9.95730 -9.09086 -4.92022 -0.70898 0.33308 0.40279 0.48667 1.30669 1.59127 1.74385 1.96119 1.98628 2.58481 2.99173 3.22292 3.36851 3.43462 3.46268 3.60009 3.66324 3.67831 3.75740 3.82623 3.87147 4.00373 4.05005 4.11718 4.23993 4.28402 4.36592 4.40287 4.53573 4.55355 4.63643 4.64076 4.67355 4.71036 4.75226 4.80769 4.89280 4.90968 5.00705 5.08113 5.09569 5.11675 5.17381 5.19769 5.26321 5.39977 5.49714 5.54661 5.64798 5.78148 5.92900 6.40319 6.46791 6.89567 7.07816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.086 4.086 3 Si 0.769 3.231 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.101 4.101 7 C -0.060 4.060 8 C -0.021 4.021 9 C -0.117 4.117 10 C -0.074 4.074 11 C -0.153 4.153 12 C 0.558 3.442 13 O -0.581 6.581 14 N -0.695 5.695 15 C 0.110 3.890 16 H 0.086 0.914 17 C -0.146 4.146 18 C -0.108 4.108 19 H 0.095 0.905 20 C 0.080 3.920 21 O -0.599 6.599 22 C -0.121 4.121 23 C -0.070 4.070 24 C -0.124 4.124 25 C -0.113 4.113 26 C -0.103 4.103 27 H 0.386 0.614 28 H 0.123 0.877 29 H -0.307 1.307 30 H -0.278 1.278 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.414 0.586 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.396 0.604 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 5.722 3.389 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.195 4.195 3 Si 0.675 3.325 4 C -0.115 4.115 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.135 4.135 10 C -0.092 4.092 11 C -0.156 4.156 12 C 0.347 3.653 13 O -0.462 6.462 14 N -0.347 5.347 15 C 0.004 3.996 16 H 0.105 0.895 17 C -0.185 4.185 18 C -0.126 4.126 19 H 0.113 0.887 20 C 0.003 3.997 21 O -0.407 6.407 22 C -0.158 4.158 23 C -0.089 4.089 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.121 4.121 27 H 0.235 0.765 28 H 0.141 0.859 29 H -0.235 1.235 30 H -0.204 1.204 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.253 0.747 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.245 0.755 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.144 0.856 44 H 0.162 0.838 45 H 0.155 0.845 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.866 5.413 2.444 6.594 hybrid contribution -0.827 -0.313 0.765 1.169 sum 2.038 5.099 3.209 6.361 Atomic orbital electron populations 1.86582 1.18591 1.80410 1.50178 1.25288 0.83402 1.12061 0.98758 0.94027 0.90259 0.71874 0.76344 1.20459 0.99362 0.94853 0.96858 1.21211 0.98208 1.00521 0.93828 1.21496 0.99059 0.93213 0.98093 1.18935 0.99165 0.94100 0.93782 1.19153 0.96153 0.93195 0.93655 1.21497 0.97493 1.01634 0.92864 1.21479 0.97502 0.92119 0.98130 1.19971 1.04368 0.95439 0.95816 1.18590 0.77213 0.86175 0.83334 1.90769 1.59399 1.17070 1.78942 1.45483 1.55165 1.13636 1.20372 1.21912 0.95101 0.96967 0.85595 0.89543 1.23545 0.95416 0.98270 1.01280 1.22630 0.94242 0.97784 0.97991 0.88692 1.22284 0.82848 0.99902 0.94670 1.86442 1.19100 1.94469 1.40714 1.23268 0.94709 1.00222 0.97638 1.21240 0.94671 1.00396 0.92641 1.21367 1.00754 0.94167 0.97921 1.21506 0.97290 1.00786 0.93504 1.21083 0.99023 0.94180 0.97799 0.76485 0.85908 1.23547 1.20444 0.83602 0.82770 0.82078 0.82522 0.74722 0.88679 0.92639 0.92085 0.92693 0.75471 0.88987 0.87014 0.85577 0.83823 0.84523 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.20 12.83 -148.98 -1.91 -3.11 16 2 C -0.09 0.12 2.80 71.24 0.20 0.32 16 3 Si 0.77 -2.41 29.88 68.60 2.05 -0.36 16 4 C -0.11 0.13 5.36 -19.82 -0.11 0.02 16 5 C -0.12 0.40 8.65 22.24 0.19 0.59 16 6 C -0.10 0.35 9.43 22.49 0.21 0.56 16 7 C -0.06 0.04 5.88 -20.04 -0.12 -0.08 16 8 C -0.02 0.01 5.88 -20.00 -0.12 -0.11 16 9 C -0.12 0.42 9.41 22.44 0.21 0.63 16 10 C -0.07 0.22 9.52 22.49 0.21 0.43 16 11 C -0.15 -0.53 5.88 -20.06 -0.12 -0.65 16 12 C 0.56 3.93 7.77 86.75 0.67 4.61 16 13 O -0.58 -9.19 15.95 -3.95 -0.06 -9.25 16 14 N -0.69 -0.19 5.21 -443.02 -2.31 -2.50 16 15 C 0.11 0.05 4.30 45.52 0.20 0.24 16 16 H 0.09 0.40 7.50 -2.39 -0.02 0.39 16 17 C -0.15 -0.08 7.45 31.22 0.23 0.15 16 18 C -0.11 0.33 3.90 -10.18 -0.04 0.29 16 19 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 20 C 0.08 -0.29 6.89 71.98 0.50 0.21 16 21 O -0.60 -0.12 13.66 -148.98 -2.04 -2.15 16 22 C -0.12 0.67 7.38 31.12 0.23 0.90 16 23 C -0.07 -0.33 9.58 22.49 0.22 -0.11 16 24 C -0.12 -0.18 9.41 22.44 0.21 0.04 16 25 C -0.11 0.01 9.43 22.49 0.21 0.23 16 26 C -0.10 -0.03 9.67 22.23 0.21 0.19 16 27 H 0.39 -1.33 8.70 -74.05 -0.64 -1.97 16 28 H 0.12 -0.31 7.96 -2.39 -0.02 -0.33 16 29 H -0.31 -1.62 7.11 99.48 0.71 -0.91 16 30 H -0.28 0.05 7.00 99.48 0.70 0.75 16 31 H 0.15 -1.04 4.82 -2.91 -0.01 -1.05 16 32 H 0.15 -1.37 6.19 -2.91 -0.02 -1.39 16 33 H 0.16 -1.53 6.19 -2.91 -0.02 -1.55 16 34 H 0.16 -1.52 6.39 -2.91 -0.02 -1.53 16 35 H 0.41 -2.47 6.72 -92.71 -0.62 -3.10 16 36 H 0.09 -0.02 7.91 -2.39 -0.02 -0.04 16 37 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.05 -0.27 7.85 -2.38 -0.02 -0.29 16 40 H 0.40 -3.15 9.12 -74.06 -0.68 -3.83 16 41 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H 0.11 -0.85 8.10 -2.38 -0.02 -0.87 16 43 H 0.13 0.82 7.64 -2.91 -0.02 0.79 16 44 H 0.14 -0.25 6.19 -2.91 -0.02 -0.27 16 45 H 0.14 -0.36 6.19 -2.91 -0.02 -0.38 16 46 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 Total: 0.00 -23.84 378.29 -1.92 -25.76 By element: Atomic # 1 Polarization: -15.98 SS G_CDS: -0.86 Total: -16.84 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 3.21 Total: 8.46 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -2.31 Total: -2.50 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -4.01 Total: -14.52 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: 2.05 Total: -0.36 kcal Total: -23.84 -1.92 -25.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_13158362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.784 kcal (2) G-P(sol) polarization free energy of solvation -23.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds