Wall clock time and date at job start Sat Mar 6 2021 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.47206 * 2 1 4 4 C 1.50696 * 109.47540 * 239.99376 * 2 1 3 5 5 C 1.38317 * 119.88017 * 300.00030 * 4 2 1 6 6 C 1.38021 * 120.12251 * 179.97438 * 5 4 2 7 7 C 1.39335 * 119.87887 * 0.02562 * 6 5 4 8 8 C 1.48386 * 120.12466 * 180.02562 * 7 6 5 9 9 C 1.39312 * 120.11994 * 56.51783 * 8 7 6 10 10 C 1.50701 * 120.06446 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.46985 * 80.09870 * 10 9 8 12 12 O 1.21285 * 119.99906 * 5.82197 * 11 10 9 13 13 N 1.34775 * 120.00145 * 185.82965 * 11 10 9 14 14 C 1.46494 * 120.00172 * 180.02562 * 13 11 10 15 15 H 1.08990 * 112.85172 * 23.79893 * 14 13 11 16 16 C 1.53784 * 113.61705 * 154.99894 * 14 13 11 17 17 C 1.53780 * 87.17369 * 89.07018 * 16 14 13 18 18 H 1.09001 * 113.61382 * 270.92408 * 17 16 14 19 19 C 1.53002 * 113.61290 * 140.02492 * 17 16 14 20 20 O 1.42896 * 109.47197 * 174.99701 * 19 17 16 21 21 C 1.53786 * 113.61358 * 252.49383 * 14 13 11 22 22 C 1.38042 * 119.87665 * 179.72890 * 9 8 7 23 23 C 1.38297 * 120.12072 * 0.27429 * 22 9 8 24 24 C 1.38334 * 120.24514 * 359.96164 * 23 22 9 25 25 C 1.38000 * 120.12049 * 0.03790 * 24 23 22 26 26 C 1.39345 * 119.75559 * 0.27104 * 7 6 5 27 27 C 1.38019 * 119.87561 * 359.47253 * 26 7 6 28 28 H 0.96706 * 113.99578 * 60.00734 * 1 2 3 29 29 H 1.09007 * 109.47115 * 119.99329 * 2 1 3 30 30 H 1.48508 * 109.99500 * 298.67573 * 3 2 1 31 31 H 1.48496 * 109.99902 * 59.99281 * 3 2 1 32 32 H 1.07998 * 119.93754 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.06047 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46656 * 320.10037 * 10 9 8 35 35 H 1.09000 * 109.47559 * 200.09689 * 10 9 8 36 36 H 0.97002 * 119.99773 * 359.97438 * 13 11 10 37 37 H 1.08999 * 113.61505 * 203.66826 * 16 14 13 38 38 H 1.09005 * 113.60997 * 334.48023 * 16 14 13 39 39 H 1.08998 * 109.47368 * 295.00079 * 19 17 16 40 40 H 1.09007 * 109.46882 * 55.00297 * 19 17 16 41 41 H 0.96698 * 114.00078 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.61060 * 25.42964 * 21 14 13 43 43 H 1.08998 * 113.61624 * 156.25224 * 21 14 13 44 44 H 1.07998 * 119.94148 * 180.25625 * 22 9 8 45 45 H 1.08001 * 119.87536 * 179.97438 * 23 22 9 46 46 H 1.07998 * 119.94124 * 180.02562 * 24 23 22 47 47 H 1.08005 * 120.06025 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.05837 * 179.72268 * 26 7 6 49 49 H 1.08005 * 119.93450 * 180.22598 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.5958 -2.0348 -1.4466 6 6 2.0528 -2.6902 -2.5720 7 6 2.8540 -2.0156 -3.4909 8 6 3.3478 -2.7148 -4.7029 9 6 2.4463 -3.3073 -5.5843 10 6 0.9661 -3.2392 -5.3093 11 6 0.4372 -1.8941 -5.7361 12 8 1.1635 -1.1119 -6.3120 13 7 -0.8427 -1.5604 -5.4777 14 6 -1.3570 -0.2531 -5.8931 15 1 -0.7970 0.1778 -6.7230 16 6 -2.8807 -0.2275 -6.0991 17 6 -2.9992 0.1393 -4.6104 18 1 -3.0649 -0.7264 -3.9513 19 6 -4.0731 1.1902 -4.3217 20 8 -4.1880 1.3785 -2.9099 21 6 -1.5777 0.7218 -4.7244 22 6 2.9108 -3.9517 -6.7133 23 6 4.2689 -4.0145 -6.9671 24 6 5.1689 -3.4321 -6.0928 25 6 4.7154 -2.7854 -4.9612 26 6 3.1941 -0.6833 -3.2648 27 6 2.7272 -0.0361 -2.1387 28 1 -0.3933 0.4416 -0.7652 29 1 1.7923 -0.5138 0.8901 30 1 1.5879 2.4585 -1.2244 31 1 1.5614 2.4679 1.2084 32 1 0.9750 -2.5569 -0.7336 33 1 1.7905 -3.7244 -2.7397 34 1 0.7880 -3.3780 -4.2430 35 1 0.4562 -4.0240 -5.8680 36 1 -1.4236 -2.1861 -5.0174 37 1 -3.2173 0.5616 -6.7714 38 1 -3.3046 -1.2015 -6.3439 39 1 -3.7946 2.1330 -4.7925 40 1 -5.0290 0.8524 -4.7222 41 1 -4.8518 2.0331 -2.6531 42 1 -0.9498 0.5139 -3.8580 43 1 -1.5566 1.7705 -5.0206 44 1 2.2126 -4.4078 -7.3994 45 1 4.6280 -4.5200 -7.8514 46 1 6.2283 -3.4838 -6.2961 47 1 5.4190 -2.3314 -4.2790 48 1 3.8186 -0.1570 -3.9715 49 1 2.9873 0.9975 -1.9644 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_13158394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:12 Heat of formation + Delta-G solvation = -37.799966 kcal Electronic energy + Delta-G solvation = -32119.845008 eV Core-core repulsion = 27978.889075 eV Total energy + Delta-G solvation = -4140.955933 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.66144 -40.91476 -39.92555 -39.20806 -37.69857 -37.26859 -34.52172 -34.13528 -33.36830 -31.99600 -30.74266 -29.43217 -28.18278 -26.74675 -26.59082 -24.11696 -23.76378 -23.35912 -22.77681 -21.89724 -21.32425 -20.29795 -18.66339 -18.32448 -18.17601 -17.91966 -17.18864 -17.07646 -16.63988 -16.46860 -16.27181 -16.00743 -15.94468 -15.79695 -15.54997 -15.36918 -15.04395 -14.85286 -14.63280 -14.44144 -14.12889 -14.04952 -13.70565 -13.59363 -13.46875 -13.32366 -13.27200 -13.12679 -12.92638 -12.40906 -12.34786 -12.05714 -11.84084 -11.78744 -11.68327 -11.65911 -11.44111 -11.01908 -10.82302 -10.67152 -10.16476 -10.08123 -9.95483 -9.74171 -9.23117 -4.99112 -0.10449 0.37167 0.40784 0.60802 1.26004 1.54124 1.59939 1.88744 2.12073 2.60774 2.87415 3.18451 3.34900 3.43973 3.51572 3.64065 3.65445 3.74041 3.77475 3.89994 3.93364 3.96087 4.01729 4.08320 4.18477 4.29933 4.36094 4.36480 4.48998 4.51310 4.52067 4.55454 4.60450 4.61185 4.68284 4.69185 4.71685 4.79973 4.86119 4.96344 4.97765 5.01128 5.07253 5.10504 5.19548 5.33357 5.40651 5.45928 5.52858 5.57727 5.58813 5.65384 5.92228 6.05484 6.39372 6.50222 6.84135 7.23136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.076 4.076 3 Si 0.752 3.248 4 C -0.118 4.118 5 C -0.092 4.092 6 C -0.114 4.114 7 C -0.041 4.041 8 C -0.051 4.051 9 C -0.065 4.065 10 C -0.109 4.109 11 C 0.519 3.481 12 O -0.572 6.572 13 N -0.703 5.703 14 C 0.116 3.884 15 H 0.082 0.918 16 C -0.123 4.123 17 C -0.105 4.105 18 H 0.094 0.906 19 C 0.080 3.920 20 O -0.597 6.597 21 C -0.145 4.145 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.118 4.118 26 C -0.108 4.108 27 C -0.117 4.117 28 H 0.382 0.618 29 H 0.131 0.869 30 H -0.292 1.292 31 H -0.298 1.298 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.414 0.586 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.395 0.605 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.131 0.869 48 H 0.121 0.879 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 -2.670 -0.837 3.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.185 4.185 3 Si 0.659 3.341 4 C -0.119 4.119 5 C -0.110 4.110 6 C -0.132 4.132 7 C -0.041 4.041 8 C -0.051 4.051 9 C -0.065 4.065 10 C -0.148 4.148 11 C 0.307 3.693 12 O -0.450 6.450 13 N -0.356 5.356 14 C 0.010 3.990 15 H 0.100 0.900 16 C -0.161 4.161 17 C -0.123 4.123 18 H 0.112 0.888 19 C 0.003 3.997 20 O -0.405 6.405 21 C -0.184 4.184 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.126 4.126 27 C -0.135 4.135 28 H 0.231 0.769 29 H 0.148 0.852 30 H -0.219 1.219 31 H -0.226 1.226 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.251 0.749 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.244 0.756 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.149 0.851 48 H 0.139 0.861 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.471 -2.045 -0.701 2.615 hybrid contribution -1.589 0.392 -0.413 1.688 sum -3.061 -1.654 -1.114 3.653 Atomic orbital electron populations 1.86571 1.18319 1.80154 1.49956 1.25115 0.83477 1.11043 0.98905 0.94246 0.90651 0.73013 0.76186 1.20342 0.99204 0.95415 0.96907 1.21061 0.98881 0.93742 0.97306 1.21382 0.97537 1.00493 0.93758 1.18866 0.97790 0.93575 0.93850 1.18731 0.93511 0.98310 0.94508 1.19437 0.93894 0.98067 0.95130 1.20925 0.92872 0.95247 1.05774 1.20876 0.81562 0.89058 0.77818 1.90718 1.57880 1.53513 1.42894 1.45576 1.11924 1.17733 1.60318 1.21764 0.95753 0.84163 0.97318 0.90025 1.23266 0.93209 1.04030 0.95558 1.22586 0.93737 0.98711 0.97275 0.88759 1.22277 0.98322 0.97840 0.81267 1.86442 1.64483 1.65929 1.23637 1.23501 0.96964 0.99505 0.98413 1.21228 0.96484 0.99462 0.96424 1.21483 0.93231 0.99529 1.00035 1.21381 1.00913 0.97752 0.94298 1.21380 0.94426 0.99671 0.98132 1.21227 1.00074 0.94074 0.97266 1.21053 0.98223 0.99956 0.94230 0.76895 0.85178 1.21930 1.22606 0.84536 0.83968 0.86084 0.85124 0.74934 0.87484 0.89093 0.92942 0.92211 0.75576 0.92804 0.89385 0.84402 0.84157 0.84159 0.85123 0.86071 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.23 12.77 -148.98 -1.90 -4.13 16 2 C -0.08 -0.08 2.82 71.23 0.20 0.12 16 3 Si 0.75 0.73 29.78 68.60 2.04 2.77 16 4 C -0.12 -0.22 5.39 -19.83 -0.11 -0.33 16 5 C -0.09 -0.11 9.59 22.24 0.21 0.11 16 6 C -0.11 -0.13 7.83 22.48 0.18 0.05 16 7 C -0.04 -0.18 4.74 -20.04 -0.09 -0.27 16 8 C -0.05 -0.27 5.38 -20.05 -0.11 -0.38 16 9 C -0.06 -0.25 4.39 -19.65 -0.09 -0.34 16 10 C -0.11 0.09 5.31 29.10 0.15 0.25 16 11 C 0.52 2.35 7.60 87.66 0.67 3.02 16 12 O -0.57 -7.98 15.64 -3.05 -0.05 -8.03 16 13 N -0.70 0.43 5.26 -440.04 -2.32 -1.89 16 14 C 0.12 0.09 4.32 45.52 0.20 0.28 16 15 H 0.08 0.45 7.46 -2.39 -0.02 0.44 16 16 C -0.12 0.57 7.38 31.12 0.23 0.80 16 17 C -0.10 0.23 3.90 -10.17 -0.04 0.19 16 18 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 19 C 0.08 -0.20 6.89 71.98 0.50 0.30 16 20 O -0.60 -0.61 13.66 -148.98 -2.03 -2.64 16 21 C -0.15 -0.19 7.44 31.21 0.23 0.04 16 22 C -0.12 -0.34 9.66 22.24 0.21 -0.13 16 23 C -0.12 -0.31 10.04 22.31 0.22 -0.09 16 24 C -0.13 -0.36 10.03 22.24 0.22 -0.14 16 25 C -0.12 -0.54 9.62 22.48 0.22 -0.32 16 26 C -0.11 -0.56 9.63 22.48 0.22 -0.34 16 27 C -0.12 -0.34 8.65 22.24 0.19 -0.14 16 28 H 0.38 0.23 8.70 -74.05 -0.64 -0.41 16 29 H 0.13 -0.17 7.96 -2.38 -0.02 -0.19 16 30 H -0.29 -1.82 7.11 99.48 0.71 -1.11 16 31 H -0.30 -2.37 7.11 99.48 0.71 -1.66 16 32 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 33 H 0.14 -0.38 7.08 -2.91 -0.02 -0.40 16 34 H 0.12 -0.46 4.85 -2.39 -0.01 -0.47 16 35 H 0.13 -0.85 8.01 -2.39 -0.02 -0.87 16 36 H 0.41 -2.57 8.70 -92.71 -0.81 -3.38 16 37 H 0.11 -0.67 8.10 -2.39 -0.02 -0.69 16 38 H 0.09 -0.62 8.14 -2.38 -0.02 -0.63 16 39 H 0.05 -0.19 7.85 -2.39 -0.02 -0.21 16 40 H 0.06 -0.29 8.14 -2.38 -0.02 -0.31 16 41 H 0.39 -2.69 9.12 -74.06 -0.68 -3.37 16 42 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.09 0.12 7.91 -2.39 -0.02 0.10 16 44 H 0.14 -0.17 8.04 -2.91 -0.02 -0.19 16 45 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 46 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 47 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 48 H 0.12 0.66 8.06 -2.91 -0.02 0.64 16 49 H 0.14 0.01 4.86 -2.91 -0.01 0.00 16 Total: 0.00 -22.32 403.45 -1.93 -24.25 By element: Atomic # 1 Polarization: -11.92 SS G_CDS: -1.09 Total: -13.01 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 3.42 Total: 2.68 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -2.32 Total: -1.89 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -3.98 Total: -14.80 kcal Atomic # 14 Polarization: 0.73 SS G_CDS: 2.04 Total: 2.77 kcal Total: -22.32 -1.93 -24.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_13158394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.548 kcal (2) G-P(sol) polarization free energy of solvation -22.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds