Wall clock time and date at job start Sat Mar 6 2021 21:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34655 * 124.84945 * 2 1 4 4 C 1.36775 * 108.39467 * 179.97438 * 3 2 1 5 5 C 1.47264 * 126.94216 * 180.02562 * 4 3 2 6 6 O 1.21622 * 119.99731 * 179.97438 * 5 4 3 7 7 N 1.34781 * 119.99628 * 359.97438 * 5 4 3 8 8 C 1.46508 * 119.99487 * 179.97438 * 7 5 4 9 9 H 1.08996 * 112.84986 * 336.19879 * 8 7 5 10 10 C 1.53781 * 113.60990 * 107.50643 * 8 7 5 11 11 C 1.53774 * 87.08083 * 89.11626 * 10 8 7 12 12 H 1.09001 * 113.68947 * 270.87065 * 11 10 8 13 13 C 1.52998 * 113.61517 * 139.97746 * 11 10 8 14 14 O 1.42905 * 109.47048 * 87.50484 * 13 11 10 15 15 C 1.53774 * 87.08574 * 25.42870 * 11 10 8 16 16 C 1.46690 * 106.11279 * 359.97438 * 4 3 2 17 17 C 1.34485 * 106.33274 * 359.97438 * 16 4 3 18 18 C 1.50696 * 125.56785 * 179.97438 * 17 16 4 19 19 O 1.42902 * 109.47256 * 150.02585 * 18 17 16 20 20 Si 1.86305 * 109.47183 * 30.02907 * 18 17 16 21 21 H 1.08994 * 109.47738 * 270.03428 * 1 2 3 22 22 H 1.09004 * 109.46511 * 30.03297 * 1 2 3 23 23 H 1.08997 * 109.46809 * 150.02875 * 1 2 3 24 24 H 1.08005 * 125.80320 * 0.02562 * 3 2 1 25 25 H 0.96997 * 120.00150 * 0.02562 * 7 5 4 26 26 H 1.09004 * 113.60965 * 203.66338 * 10 8 7 27 27 H 1.08992 * 113.61429 * 334.55926 * 10 8 7 28 28 H 1.09004 * 109.47364 * 207.49931 * 13 11 10 29 29 H 1.08996 * 109.47599 * 327.50182 * 13 11 10 30 30 H 0.96701 * 114.00459 * 180.02562 * 14 13 11 31 31 H 1.09005 * 113.62071 * 220.02141 * 15 11 10 32 32 H 1.09002 * 113.69407 * 89.12877 * 15 11 10 33 33 H 1.08004 * 126.82773 * 180.26241 * 16 4 3 34 34 H 1.08995 * 109.47390 * 270.02687 * 18 17 16 35 35 H 0.96706 * 113.99852 * 300.00224 * 19 18 17 36 36 H 1.48499 * 109.99986 * 58.67523 * 20 18 17 37 37 H 1.48498 * 109.99919 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7176 0.0006 5 6 4.7284 1.5957 0.0013 6 8 5.8446 1.1127 0.0023 7 7 4.5734 2.9346 0.0009 8 6 5.7495 3.8081 0.0022 9 1 6.6368 3.3228 0.4087 10 6 5.9929 4.5155 -1.3414 11 6 5.0876 5.6445 -0.8213 12 1 4.0313 5.4980 -1.0469 13 6 5.5842 7.0451 -1.1854 14 8 5.0733 7.4131 -2.4683 15 6 5.4818 5.2007 0.5972 16 6 3.5375 -0.7493 0.0016 17 6 2.2447 -1.1197 0.0021 18 6 1.7397 -2.5396 0.0026 19 8 0.4807 -2.5972 0.6762 20 14 2.9647 -3.6340 0.8815 21 1 -0.3634 0.0006 1.0276 22 1 -0.3632 0.8898 -0.5144 23 1 -0.3633 -0.8902 -0.5134 24 1 1.8767 2.1241 0.0004 25 1 3.6831 3.3197 0.0006 26 1 7.0283 4.8207 -1.4928 27 1 5.5783 3.9823 -2.1968 28 1 5.2380 7.7591 -0.4381 29 1 6.6738 7.0484 -1.2137 30 1 5.3487 8.2915 -2.7642 31 1 4.6546 5.2207 1.3068 32 1 6.3773 5.6926 0.9772 33 1 4.3981 -1.4018 0.0062 34 1 1.6181 -2.8824 -1.0248 35 1 0.5139 -2.3058 1.5977 36 1 3.1635 -3.1580 2.2740 37 1 2.4780 -5.0370 0.8894 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_13287730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:24 Heat of formation + Delta-G solvation = -42.640760 kcal Electronic energy + Delta-G solvation = -20216.890488 eV Core-core repulsion = 16962.504672 eV Total energy + Delta-G solvation = -3254.385816 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47725 -41.06506 -39.30365 -37.88351 -37.20390 -34.40345 -33.65845 -31.40791 -28.91957 -27.47178 -26.67655 -26.26547 -24.17448 -23.07406 -21.08781 -20.71003 -20.15643 -19.10318 -18.19672 -17.46109 -17.25641 -16.80752 -16.76273 -16.10506 -15.89433 -15.63571 -15.48718 -15.35127 -15.00155 -14.61738 -14.42580 -14.08819 -13.50724 -13.48717 -13.36819 -13.20496 -13.17041 -12.96155 -12.41836 -12.01650 -11.77873 -11.60669 -11.37158 -11.03975 -10.95378 -10.76228 -10.09086 -9.58171 -9.22221 -4.89617 0.71555 1.02924 1.44351 1.62467 1.79842 2.04112 2.24465 2.52964 3.20411 3.25109 3.51073 3.56093 3.71678 3.84167 3.88715 3.94792 4.15597 4.27203 4.39578 4.43480 4.45799 4.52616 4.58469 4.66858 4.73161 4.77693 4.79346 4.84364 4.94357 4.98594 5.05594 5.15528 5.25542 5.60711 5.68040 5.95378 6.21138 6.34704 6.62518 6.90684 7.32848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.427 5.427 3 C 0.071 3.929 4 C -0.262 4.262 5 C 0.590 3.410 6 O -0.592 6.592 7 N -0.700 5.700 8 C 0.113 3.887 9 H 0.084 0.916 10 C -0.146 4.146 11 C -0.107 4.107 12 H 0.094 0.906 13 C 0.080 3.920 14 O -0.599 6.599 15 C -0.121 4.121 16 C -0.155 4.155 17 C -0.022 4.022 18 C -0.043 4.043 19 O -0.540 6.540 20 Si 0.772 3.228 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.206 0.794 25 H 0.411 0.589 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.395 0.605 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.386 0.614 36 H -0.295 1.295 37 H -0.288 1.288 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 4.875 0.804 6.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.101 5.101 3 C -0.067 4.067 4 C -0.272 4.272 5 C 0.380 3.620 6 O -0.473 6.473 7 N -0.351 5.351 8 C 0.007 3.993 9 H 0.103 0.897 10 C -0.185 4.185 11 C -0.125 4.125 12 H 0.112 0.888 13 C 0.003 3.997 14 O -0.407 6.407 15 C -0.159 4.159 16 C -0.179 4.179 17 C -0.132 4.132 18 C -0.153 4.153 19 O -0.348 6.348 20 Si 0.676 3.324 21 H 0.106 0.894 22 H 0.121 0.879 23 H 0.112 0.888 24 H 0.222 0.778 25 H 0.248 0.752 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.245 0.755 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.173 0.827 34 H 0.150 0.850 35 H 0.235 0.765 36 H -0.221 1.221 37 H -0.215 1.215 Dipole moment (debyes) X Y Z Total from point charges -4.183 3.157 0.942 5.325 hybrid contribution -0.732 1.126 0.561 1.455 sum -4.915 4.284 1.503 6.691 Atomic orbital electron populations 1.22453 0.74503 1.05926 1.04911 1.43724 1.08074 1.04623 1.53656 1.22379 0.89089 0.93161 1.02058 1.20322 0.92121 0.94040 1.20708 1.17701 0.87891 0.82056 0.74346 1.90744 1.27699 1.76081 1.52796 1.45365 1.09830 1.04748 1.75182 1.21839 0.89265 0.90601 0.97595 0.89747 1.23490 1.00842 0.97119 0.97041 1.22558 1.00252 0.93243 0.96450 0.88774 1.22292 0.97480 0.95424 0.84522 1.86443 1.76989 1.40711 1.36557 1.23271 1.03819 0.93136 0.95716 1.21818 0.95649 0.93453 1.07007 1.20865 0.90426 0.89805 1.12062 1.24723 0.92622 0.93931 1.04043 1.86560 1.29378 1.88979 1.29862 0.93338 0.84559 0.74646 0.79862 0.89388 0.87885 0.88771 0.77760 0.75166 0.88821 0.92675 0.92173 0.92703 0.75504 0.89196 0.87222 0.82749 0.84965 0.76463 1.22134 1.21474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.49 9.81 127.77 1.25 0.76 16 2 N -0.43 0.88 3.09 -533.24 -1.65 -0.77 16 3 C 0.07 -0.14 10.83 83.92 0.91 0.77 16 4 C -0.26 -1.37 6.29 -19.04 -0.12 -1.49 16 5 C 0.59 5.33 7.81 86.62 0.68 6.00 16 6 O -0.59 -10.75 16.57 -4.10 -0.07 -10.82 16 7 N -0.70 -1.14 5.25 -443.44 -2.33 -3.47 16 8 C 0.11 0.19 4.33 45.52 0.20 0.39 16 9 H 0.08 0.53 7.46 -2.39 -0.02 0.52 16 10 C -0.15 -0.23 7.43 31.12 0.23 0.00 16 11 C -0.11 0.24 3.89 -10.27 -0.04 0.20 16 12 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 13 C 0.08 -0.23 6.89 71.98 0.50 0.27 16 14 O -0.60 -0.43 13.66 -148.98 -2.04 -2.47 16 15 C -0.12 0.54 7.39 31.12 0.23 0.77 16 16 C -0.16 -0.80 9.50 23.62 0.22 -0.58 16 17 C -0.02 -0.02 6.14 40.98 0.25 0.23 16 18 C -0.04 0.07 2.87 71.23 0.20 0.27 16 19 O -0.54 0.99 10.32 -148.98 -1.54 -0.55 16 20 Si 0.77 -0.26 31.12 68.60 2.13 1.87 16 21 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 22 H 0.10 -1.20 8.13 -2.38 -0.02 -1.22 16 23 H 0.09 -0.58 6.73 -2.39 -0.02 -0.59 16 24 H 0.21 -2.12 7.45 -2.91 -0.02 -2.14 16 25 H 0.41 -2.02 7.64 -92.71 -0.71 -2.73 16 26 H 0.09 0.07 7.90 -2.39 -0.02 0.05 16 27 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.05 -0.23 7.84 -2.39 -0.02 -0.25 16 30 H 0.40 -2.97 9.12 -74.06 -0.68 -3.64 16 31 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 32 H 0.11 -0.71 8.10 -2.39 -0.02 -0.73 16 33 H 0.16 0.67 6.89 -2.91 -0.02 0.65 16 34 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 35 H 0.39 -2.42 8.70 -74.05 -0.64 -3.07 16 36 H -0.29 -1.74 7.11 99.48 0.71 -1.04 16 37 H -0.29 -1.54 7.11 99.48 0.71 -0.84 16 Total: 0.00 -24.05 312.00 -1.85 -25.90 By element: Atomic # 1 Polarization: -16.41 SS G_CDS: -0.88 Total: -17.30 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 4.51 Total: 7.60 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -3.97 Total: -4.24 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -3.64 Total: -13.83 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.13 Total: 1.87 kcal Total: -24.05 -1.85 -25.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_13287730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.745 kcal (2) G-P(sol) polarization free energy of solvation -24.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds