Wall clock time and date at job start Sat Mar 6 2021 21:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.34494 * 125.49221 * 150.02218 * 4 2 1 6 6 C 1.46756 * 106.36100 * 179.97438 * 5 4 2 7 7 C 1.47269 * 126.96495 * 180.02562 * 6 5 4 8 8 O 1.21630 * 119.99903 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99829 * 359.97149 * 7 6 5 10 10 C 1.46506 * 119.99535 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.85098 * 336.20589 * 10 9 7 12 12 C 1.53783 * 113.61011 * 107.50862 * 10 9 7 13 13 C 1.53781 * 87.08281 * 89.11669 * 12 10 9 14 14 H 1.09000 * 113.61130 * 270.88021 * 13 12 10 15 15 C 1.53001 * 113.69224 * 139.99139 * 13 12 10 16 16 O 1.42898 * 109.47177 * 87.46484 * 15 13 12 17 17 C 1.53780 * 87.08114 * 25.42909 * 13 12 10 18 18 C 1.36328 * 106.06483 * 359.97438 * 6 5 4 19 19 C 1.50996 * 126.79505 * 180.02562 * 18 6 5 20 20 C 1.53388 * 108.25769 * 164.35642 * 19 18 6 21 21 C 1.53161 * 109.04278 * 48.46318 * 20 19 18 22 22 C 1.53129 * 109.52223 * 290.42550 * 21 20 19 23 23 N 1.35217 * 108.66241 * 359.76194 * 18 6 5 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 26 26 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 27 27 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 28 28 H 1.07997 * 126.81927 * 359.96455 * 5 4 2 29 29 H 0.96994 * 120.00452 * 0.02562 * 9 7 6 30 30 H 1.09005 * 113.61314 * 203.66044 * 12 10 9 31 31 H 1.09001 * 113.61964 * 334.56573 * 12 10 9 32 32 H 1.09004 * 109.46886 * 207.46248 * 15 13 12 33 33 H 1.09001 * 109.46831 * 327.46059 * 15 13 12 34 34 H 0.96699 * 114.00262 * 180.02562 * 16 15 13 35 35 H 1.09002 * 113.61555 * 220.01880 * 17 13 12 36 36 H 1.08999 * 113.68850 * 89.12764 * 17 13 12 37 37 H 1.08998 * 109.70926 * 284.05823 * 19 18 6 38 38 H 1.09007 * 109.70474 * 44.63325 * 19 18 6 39 39 H 1.09001 * 109.54491 * 168.32798 * 20 19 18 40 40 H 1.08999 * 109.54892 * 288.59492 * 20 19 18 41 41 H 1.09005 * 109.46224 * 50.43939 * 21 20 19 42 42 H 1.09002 * 109.46687 * 170.40766 * 21 20 19 43 43 H 1.09004 * 109.56239 * 170.83595 * 22 21 20 44 44 H 1.08997 * 109.56704 * 291.05919 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 3.0859 -0.4465 -1.8678 6 6 3.1556 -1.3780 -2.9996 7 6 4.2343 -1.4806 -3.9970 8 8 4.1619 -2.3049 -4.8885 9 7 5.3016 -0.6611 -3.9220 10 6 6.3749 -0.7636 -4.9139 11 1 6.4241 -1.7456 -5.3844 12 6 6.4017 0.4033 -5.9151 13 6 7.3190 1.1331 -4.9197 14 1 6.7785 1.7279 -4.1833 15 6 8.4587 1.9058 -5.5867 16 8 8.0097 3.2196 -5.9248 17 6 7.7342 -0.2553 -4.4053 18 6 2.0200 -2.1299 -2.9399 19 6 1.6166 -3.2357 -3.8857 20 6 0.4945 -4.0470 -3.2258 21 6 -0.5703 -3.0844 -2.6915 22 6 -0.0063 -2.3089 -1.4976 23 7 1.2914 -1.7293 -1.8735 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5877 2.4585 -1.2243 27 1 1.5613 2.4680 1.2084 28 1 3.8166 0.3023 -1.5999 29 1 5.3595 -0.0040 -3.2109 30 1 6.8891 0.1579 -6.8587 31 1 5.4333 0.8850 -6.0505 32 1 9.3015 1.9757 -4.8989 33 1 8.7705 1.3842 -6.4916 34 1 8.6821 3.7671 -6.3528 35 1 7.8416 -0.3054 -3.3217 36 1 8.5859 -0.6819 -4.9352 37 1 1.2587 -2.8066 -4.8215 38 1 2.4721 -3.8822 -4.0813 39 1 0.0461 -4.7147 -3.9615 40 1 0.9034 -4.6320 -2.4020 41 1 -0.8546 -2.3847 -3.4775 42 1 -1.4463 -3.6509 -2.3755 43 1 -0.6979 -1.5136 -1.2193 44 1 0.1300 -2.9857 -0.6541 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_16915396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:30:03 Heat of formation + Delta-G solvation = -53.640408 kcal Electronic energy + Delta-G solvation = -25969.140654 eV Core-core repulsion = 22274.976479 eV Total energy + Delta-G solvation = -3694.164175 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.81338 -41.05351 -39.30694 -38.10153 -37.17699 -36.91987 -34.22646 -33.45173 -31.18439 -29.76707 -28.55012 -26.65271 -26.56039 -24.69231 -24.41567 -23.06404 -21.78149 -21.27882 -20.22245 -19.54665 -18.95173 -18.16358 -17.55175 -17.08619 -16.70600 -16.55802 -16.17623 -16.11797 -15.75487 -15.58256 -15.36076 -15.19069 -15.10456 -14.88573 -14.61715 -14.38078 -14.28994 -13.87984 -13.43722 -13.37404 -13.22400 -12.99115 -12.81066 -12.40634 -12.19135 -12.02018 -11.84568 -11.77927 -11.72720 -11.56761 -11.33916 -10.92862 -10.86457 -10.73022 -10.04905 -9.56813 -9.06650 -4.91549 0.69714 1.04062 1.43020 1.66669 1.77128 2.01697 2.38533 2.51677 3.17154 3.28665 3.45325 3.54863 3.55409 3.66699 3.75348 3.76567 3.79767 3.91061 4.14222 4.18837 4.29571 4.34363 4.37986 4.47130 4.51019 4.61102 4.61891 4.70374 4.72484 4.75585 4.78188 4.80590 4.82821 4.89482 4.95385 4.98890 5.08145 5.14380 5.17947 5.19919 5.30998 5.68318 5.72378 6.00631 6.19991 6.32283 6.67654 6.93479 7.35701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.054 4.054 3 Si 0.799 3.201 4 C -0.017 4.017 5 C -0.161 4.161 6 C -0.258 4.258 7 C 0.591 3.409 8 O -0.590 6.590 9 N -0.698 5.698 10 C 0.114 3.886 11 H 0.085 0.915 12 C -0.147 4.147 13 C -0.107 4.107 14 H 0.095 0.905 15 C 0.081 3.919 16 O -0.598 6.598 17 C -0.121 4.121 18 C 0.103 3.897 19 C -0.054 4.054 20 C -0.124 4.124 21 C -0.134 4.134 22 C 0.095 3.905 23 N -0.428 5.428 24 H 0.385 0.615 25 H 0.132 0.868 26 H -0.293 1.293 27 H -0.294 1.294 28 H 0.183 0.817 29 H 0.413 0.587 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 1.378 3.035 4.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.162 4.162 3 Si 0.702 3.298 4 C -0.126 4.126 5 C -0.184 4.184 6 C -0.267 4.267 7 C 0.381 3.619 8 O -0.472 6.472 9 N -0.348 5.348 10 C 0.008 3.992 11 H 0.103 0.897 12 C -0.186 4.186 13 C -0.126 4.126 14 H 0.113 0.887 15 C 0.003 3.997 16 O -0.407 6.407 17 C -0.159 4.159 18 C -0.015 4.015 19 C -0.092 4.092 20 C -0.162 4.162 21 C -0.171 4.171 22 C -0.025 4.025 23 N -0.105 5.105 24 H 0.235 0.765 25 H 0.149 0.851 26 H -0.220 1.220 27 H -0.221 1.221 28 H 0.200 0.800 29 H 0.250 0.750 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.292 0.972 3.384 3.750 hybrid contribution -0.608 0.250 -0.723 0.977 sum 0.685 1.222 2.661 3.007 Atomic orbital electron populations 1.86565 1.18359 1.79828 1.50403 1.25026 0.83271 1.11662 0.96230 0.93478 0.90020 0.69990 0.76296 1.20966 0.96418 0.95269 0.99952 1.22001 0.98474 1.02517 0.95438 1.19970 0.98052 1.06291 1.02435 1.17580 0.81449 0.79648 0.83200 1.90733 1.79942 1.38811 1.37690 1.45315 1.19906 1.38225 1.31396 1.21830 0.87776 0.99109 0.90463 0.89727 1.23495 1.00047 0.96764 0.98265 1.22570 0.96644 0.95072 0.98275 0.88663 1.22289 0.95956 0.82819 0.98608 1.86447 1.44720 1.26517 1.83000 1.23267 0.95918 0.93822 1.02888 1.20563 0.91828 0.98139 0.91000 1.20433 0.99521 0.93498 0.95708 1.21698 0.95363 0.97905 1.01201 1.21931 0.99420 0.98763 0.97031 1.22442 0.81962 0.99412 0.98654 1.44053 1.17913 1.27132 1.21363 0.76505 0.85065 1.22006 1.22137 0.80021 0.74976 0.88898 0.92898 0.92062 0.92798 0.75559 0.89017 0.87241 0.90303 0.90062 0.89230 0.91444 0.91111 0.87395 0.86926 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.86 10.28 -148.98 -1.53 -0.68 16 2 C -0.05 0.16 3.00 71.23 0.21 0.37 16 3 Si 0.80 -3.22 31.11 68.60 2.13 -1.08 16 4 C -0.02 -0.01 6.15 40.99 0.25 0.24 16 5 C -0.16 -0.09 9.09 23.64 0.21 0.13 16 6 C -0.26 -1.78 6.28 -19.12 -0.12 -1.90 16 7 C 0.59 5.67 7.81 86.62 0.68 6.35 16 8 O -0.59 -9.93 14.94 -4.13 -0.06 -9.99 16 9 N -0.70 -1.97 5.26 -443.43 -2.33 -4.30 16 10 C 0.11 0.25 4.32 45.52 0.20 0.44 16 11 H 0.08 0.54 7.46 -2.39 -0.02 0.52 16 12 C -0.15 -0.31 7.43 31.12 0.23 -0.08 16 13 C -0.11 0.18 3.88 -10.27 -0.04 0.14 16 14 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 15 C 0.08 -0.20 6.89 71.98 0.50 0.29 16 16 O -0.60 -0.67 13.66 -148.98 -2.03 -2.70 16 17 C -0.12 0.49 7.39 31.12 0.23 0.72 16 18 C 0.10 0.67 6.57 41.69 0.27 0.94 16 19 C -0.05 -0.28 5.32 30.07 0.16 -0.12 16 20 C -0.12 0.08 5.98 30.78 0.18 0.26 16 21 C -0.13 0.45 5.92 30.69 0.18 0.63 16 22 C 0.09 -0.19 6.21 86.32 0.54 0.35 16 23 N -0.43 -1.07 3.11 -493.63 -1.54 -2.61 16 24 H 0.39 -2.24 8.26 -74.06 -0.61 -2.86 16 25 H 0.13 -0.63 7.96 -2.39 -0.02 -0.64 16 26 H -0.29 -0.66 7.11 99.48 0.71 0.04 16 27 H -0.29 -0.80 7.11 99.48 0.71 -0.10 16 28 H 0.18 -1.29 6.52 -2.91 -0.02 -1.30 16 29 H 0.41 -1.18 7.83 -92.71 -0.73 -1.91 16 30 H 0.09 0.11 7.90 -2.38 -0.02 0.09 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 -0.33 8.14 -2.38 -0.02 -0.34 16 33 H 0.05 -0.21 7.85 -2.39 -0.02 -0.23 16 34 H 0.39 -2.82 9.12 -74.06 -0.68 -3.49 16 35 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.11 -0.69 8.10 -2.39 -0.02 -0.71 16 37 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.72 7.40 -2.38 -0.02 0.70 16 39 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.07 -0.01 8.12 -2.39 -0.02 -0.03 16 41 H 0.07 -0.16 8.11 -2.38 -0.02 -0.18 16 42 H 0.11 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.11 -0.45 5.68 -2.38 -0.01 -0.46 16 44 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: 0.00 -22.05 350.27 -2.61 -24.66 By element: Atomic # 1 Polarization: -11.14 SS G_CDS: -0.94 Total: -12.08 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 3.69 Total: 8.78 kcal Atomic # 7 Polarization: -3.04 SS G_CDS: -3.87 Total: -6.91 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -3.63 Total: -13.37 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.13 Total: -1.08 kcal Total: -22.05 -2.61 -24.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_16915396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.977 kcal (2) G-P(sol) polarization free energy of solvation -22.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds