Wall clock time and date at job start Sat Mar 6 2021 21:30:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42895 * 1
3 3 Si 1.86300 * 109.47190 * 2 1
4 4 C 1.50697 * 109.47590 * 239.99812 * 2 1 3
5 5 C 1.38271 * 119.94391 * 119.72423 * 4 2 1
6 6 C 1.38148 * 120.05274 * 179.72564 * 5 4 2
7 7 C 1.38730 * 119.94378 * 0.57432 * 6 5 4
8 8 O 1.35900 * 120.05580 * 179.67764 * 7 6 5
9 9 C 1.42902 * 117.00003 * 0.02570 * 8 7 6
10 10 C 1.50696 * 109.47499 * 179.97438 * 9 8 7
11 11 C 1.36417 * 125.80333 * 89.70842 * 10 9 8
12 12 C 1.47383 * 127.19154 * 359.97209 * 11 10 9
13 13 O 1.21612 * 119.99744 * 359.97438 * 12 11 10
14 14 N 1.34769 * 119.99910 * 179.97438 * 12 11 10
15 15 C 1.46504 * 120.00212 * 179.97438 * 14 12 11
16 16 H 1.09007 * 112.84265 * 336.19588 * 15 14 12
17 17 C 1.53780 * 113.61791 * 107.49841 * 15 14 12
18 18 C 1.53783 * 87.07775 * 89.11806 * 17 15 14
19 19 H 1.08998 * 113.61905 * 270.88618 * 18 17 15
20 20 C 1.53007 * 113.68806 * 139.98949 * 18 17 15
21 21 O 1.42903 * 109.46513 * 87.46659 * 20 18 17
22 22 C 1.53776 * 113.61698 * 205.00208 * 15 14 12
23 23 C 1.47016 * 105.61620 * 179.87256 * 11 10 9
24 24 C 1.34182 * 105.95468 * 0.39325 * 23 11 10
25 25 O 1.33647 * 125.80297 * 270.02717 * 10 9 8
26 26 C 1.38736 * 119.88967 * 359.70253 * 7 6 5
27 27 C 1.38141 * 119.94155 * 359.97438 * 26 7 6
28 28 H 0.96695 * 114.00385 * 300.00492 * 1 2 3
29 29 H 1.09001 * 109.47255 * 120.00067 * 2 1 3
30 30 H 1.48506 * 110.00048 * 300.00131 * 3 2 1
31 31 H 1.48502 * 109.99996 * 61.31456 * 3 2 1
32 32 H 1.07996 * 119.97091 * 359.97438 * 5 4 2
33 33 H 1.07997 * 120.02591 * 180.24693 * 6 5 4
34 34 H 1.08999 * 109.46924 * 299.99564 * 9 8 7
35 35 H 1.08995 * 109.47129 * 59.99295 * 9 8 7
36 36 H 0.97002 * 120.00103 * 359.97438 * 14 12 11
37 37 H 1.08994 * 113.61602 * 203.66719 * 17 15 14
38 38 H 1.08995 * 113.61206 * 334.57528 * 17 15 14
39 39 H 1.08997 * 109.47251 * 207.46129 * 20 18 17
40 40 H 1.08992 * 109.47032 * 327.47152 * 20 18 17
41 41 H 0.96702 * 113.99806 * 179.97438 * 21 20 18
42 42 H 1.09001 * 113.61319 * 25.42978 * 22 15 14
43 43 H 1.08997 * 113.61377 * 156.33127 * 22 15 14
44 44 H 1.08002 * 127.02219 * 180.13323 * 23 11 10
45 45 H 1.08000 * 125.43945 * 179.79394 * 24 23 11
46 46 H 1.07995 * 120.02461 * 179.97438 * 26 7 6
47 47 H 1.07999 * 119.96989 * 180.02562 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7564 0.0000
4 6 1.9314 -0.7104 -1.2304
5 6 2.7216 -0.0357 -2.1426
6 6 3.1881 -0.6863 -3.2684
7 6 2.8533 -2.0144 -3.4893
8 8 3.3056 -2.6548 -4.5994
9 6 4.1221 -1.8996 -5.4966
10 6 4.5267 -2.7682 -6.6597
11 6 3.8348 -2.9128 -7.8264
12 6 2.5644 -2.2630 -8.1952
13 8 2.0218 -1.5028 -7.4163
14 7 2.0041 -2.5112 -9.3955
15 6 0.7410 -1.8657 -9.7619
16 1 0.1546 -1.5608 -8.8951
17 6 0.8978 -0.7620 -10.8212
18 6 0.7053 -1.8603 -11.8803
19 1 1.6352 -2.3391 -12.1868
20 6 -0.1586 -1.4261 -13.0661
21 8 0.6668 -0.8082 -14.0556
22 6 -0.0690 -2.6473 -10.8097
23 6 4.6224 -3.8504 -8.6401
24 6 5.6882 -4.1804 -7.8946
25 8 5.6214 -3.5325 -6.7211
26 6 2.0556 -2.6875 -2.5754
27 6 1.5971 -2.0343 -1.4478
28 1 -0.3934 0.4417 0.7649
29 1 1.7923 -0.5138 0.8900
30 1 1.5614 2.4679 -1.2085
31 1 1.5878 2.4586 1.2242
32 1 2.9776 0.9997 -1.9728
33 1 3.8085 -0.1600 -3.9787
34 1 3.5607 -1.0400 -5.8627
35 1 5.0140 -1.5549 -4.9734
36 1 2.4372 -3.1173 -10.0169
37 1 0.0951 -0.0249 -10.8058
38 1 1.8892 -0.3095 -10.8368
39 1 -0.6501 -2.2987 -13.4964
40 1 -0.9118 -0.7156 -12.7260
41 1 0.1847 -0.5077 -14.8381
42 1 0.1420 -3.7167 -10.8159
43 1 -1.1360 -2.4255 -10.7911
44 1 4.3886 -4.2047 -9.6331
45 1 6.4744 -4.8586 -8.1916
46 1 1.7932 -3.7212 -2.7454
47 1 0.9764 -2.5580 -0.7358
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_13270474_4549634.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 21:30:27
Heat of formation + Delta-G solvation = -77.468569 kcal
Electronic energy + Delta-G solvation = -31328.383157 eV
Core-core repulsion = 26832.106439 eV
Total energy + Delta-G solvation = -4496.276717 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 360.150 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-43.74352 -41.33337 -41.25819 -39.57672 -39.15722 -37.40320 -37.26428 -34.75609
-33.77273 -32.87946 -32.00990 -31.49961 -29.07161 -27.83745 -26.75042 -26.16890
-25.02138 -23.84177 -23.38902 -22.39978 -22.16079 -21.07244 -20.24638 -19.51268
-19.22560 -18.55106 -18.23470 -17.70268 -17.34291 -17.14889 -16.99554 -16.78325
-16.65332 -16.24668 -15.99082 -15.77985 -15.72370 -15.61471 -15.36606 -14.87060
-14.59776 -14.52005 -14.27587 -14.11261 -13.89116 -13.84896 -13.56532 -13.47410
-13.41579 -13.19448 -13.06418 -12.53895 -12.17839 -11.95587 -11.82973 -11.77570
-11.68854 -11.44338 -11.22327 -10.99860 -10.80981 -10.49344 -10.19406 -10.06898
-9.85228 -9.24477 -4.93990 -0.07286 0.24259 0.27917 1.00788 1.30372
1.48583 1.58964 1.94841 1.97563 2.07726 2.43622 2.59100 3.19713
3.31996 3.40444 3.42584 3.55734 3.64840 3.66881 3.71805 3.79963
3.80545 3.91196 3.94828 4.08437 4.10140 4.26577 4.37127 4.39919
4.43249 4.44256 4.51504 4.55600 4.62052 4.65652 4.70816 4.73225
4.78234 4.80623 4.93258 4.98162 5.07406 5.12700 5.15023 5.22553
5.24969 5.46405 5.52079 5.65943 5.86208 6.23438 6.38329 6.60521
6.87489 7.05006
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.560 6.560
2 C -0.080 4.080
3 Si 0.761 3.239
4 C -0.124 4.124
5 C -0.078 4.078
6 C -0.205 4.205
7 C 0.123 3.877
8 O -0.321 6.321
9 C 0.134 3.866
10 C 0.043 3.957
11 C -0.226 4.226
12 C 0.585 3.415
13 O -0.572 6.572
14 N -0.691 5.691
15 C 0.111 3.889
16 H 0.086 0.914
17 C -0.144 4.144
18 C -0.107 4.107
19 H 0.094 0.906
20 C 0.081 3.919
21 O -0.598 6.598
22 C -0.122 4.122
23 C -0.199 4.199
24 C -0.009 4.009
25 O -0.175 6.175
26 C -0.162 4.162
27 C -0.058 4.058
28 H 0.394 0.606
29 H 0.098 0.902
30 H -0.302 1.302
31 H -0.283 1.283
32 H 0.148 0.852
33 H 0.149 0.851
34 H 0.104 0.896
35 H 0.105 0.895
36 H 0.415 0.585
37 H 0.095 0.905
38 H 0.057 0.943
39 H 0.060 0.940
40 H 0.055 0.945
41 H 0.396 0.604
42 H 0.089 0.911
43 H 0.111 0.889
44 H 0.190 0.810
45 H 0.254 0.746
46 H 0.136 0.864
47 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.870 -2.503 -3.176 4.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.370 6.370
2 C -0.189 4.189
3 Si 0.667 3.333
4 C -0.124 4.124
5 C -0.096 4.096
6 C -0.223 4.223
7 C 0.079 3.921
8 O -0.236 6.236
9 C 0.060 3.940
10 C -0.010 4.010
11 C -0.231 4.231
12 C 0.374 3.626
13 O -0.453 6.453
14 N -0.342 5.342
15 C 0.006 3.994
16 H 0.104 0.896
17 C -0.183 4.183
18 C -0.126 4.126
19 H 0.112 0.888
20 C 0.003 3.997
21 O -0.407 6.407
22 C -0.160 4.160
23 C -0.217 4.217
24 C -0.075 4.075
25 O -0.070 6.070
26 C -0.181 4.181
27 C -0.076 4.076
28 H 0.245 0.755
29 H 0.116 0.884
30 H -0.230 1.230
31 H -0.210 1.210
32 H 0.165 0.835
33 H 0.167 0.833
34 H 0.122 0.878
35 H 0.123 0.877
36 H 0.252 0.748
37 H 0.114 0.886
38 H 0.075 0.925
39 H 0.079 0.921
40 H 0.073 0.927
41 H 0.245 0.755
42 H 0.108 0.892
43 H 0.129 0.871
44 H 0.207 0.793
45 H 0.270 0.730
46 H 0.154 0.846
47 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 3.004 -1.820 -2.593 4.366
hybrid contribution -1.525 -0.064 -0.512 1.610
sum 1.479 -1.884 -3.105 3.921
Atomic orbital electron populations
1.86551 1.18711 1.80636 1.51062 1.24944 0.83897 1.11656 0.98370
0.94254 0.90400 0.72304 0.76359 1.19443 1.00905 0.94740 0.97297
1.20970 0.96219 0.99765 0.92617 1.21390 1.06190 0.93824 1.00945
1.19163 0.94764 0.91863 0.86353 1.86043 1.65329 1.40545 1.31650
1.21142 0.95516 0.91175 0.86168 1.22032 0.87028 0.95872 0.96051
1.21355 0.98309 1.05971 0.97420 1.17474 0.83413 0.80156 0.81595
1.90779 1.64301 1.38461 1.51713 1.45328 1.24092 1.47886 1.16865
1.21900 0.85161 0.95006 0.97350 0.89582 1.23481 1.02499 0.96983
0.95288 1.22570 0.99890 0.97181 0.92913 0.88754 1.22276 0.92219
0.96695 0.88477 1.86441 1.40089 1.80986 1.33171 1.23283 1.00377
1.00128 0.92240 1.23241 0.95398 1.00337 1.02747 1.24927 1.01997
0.98411 0.82128 1.83793 1.38767 1.46707 1.37745 1.20631 1.01120
1.01535 0.94794 1.20954 0.96703 0.93960 0.96022 0.75519 0.88443
1.23012 1.21049 0.83524 0.83340 0.87808 0.87732 0.74822 0.88636
0.92461 0.92142 0.92658 0.75452 0.89225 0.87073 0.79252 0.73003
0.84645 0.84086
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.56 -2.52 12.74 -148.98 -1.90 -4.41 16
2 C -0.08 -0.14 2.81 71.23 0.20 0.06 16
3 Si 0.76 -0.05 29.78 68.60 2.04 1.99 16
4 C -0.12 -0.71 5.42 -19.85 -0.11 -0.82 16
5 C -0.08 -0.37 8.66 22.26 0.19 -0.18 16
6 C -0.21 -1.25 9.04 22.37 0.20 -1.05 16
7 C 0.12 1.18 6.69 22.51 0.15 1.33 16
8 O -0.32 -3.50 10.12 -92.42 -0.94 -4.43 16
9 C 0.13 0.86 4.73 71.23 0.34 1.20 16
10 C 0.04 0.28 7.00 25.26 0.18 0.46 16
11 C -0.23 -1.23 6.31 -18.99 -0.12 -1.35 16
12 C 0.58 4.96 7.81 86.65 0.68 5.64 16
13 O -0.57 -9.04 14.45 -4.07 -0.06 -9.10 16
14 N -0.69 -1.33 5.26 -443.34 -2.33 -3.66 16
15 C 0.11 0.19 4.32 45.52 0.20 0.39 16
16 H 0.09 0.54 7.46 -2.38 -0.02 0.52 16
17 C -0.14 -0.18 7.43 31.12 0.23 0.05 16
18 C -0.11 0.22 3.88 -10.26 -0.04 0.18 16
19 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16
20 C 0.08 -0.22 6.89 71.98 0.50 0.28 16
21 O -0.60 -0.48 13.66 -148.98 -2.04 -2.51 16
22 C -0.12 0.50 7.39 31.12 0.23 0.73 16
23 C -0.20 0.46 10.60 23.65 0.25 0.71 16
24 C -0.01 0.03 12.03 66.89 0.80 0.84 16
25 O -0.17 -0.59 10.52 4.56 0.05 -0.54 16
26 C -0.16 -1.39 9.99 22.37 0.22 -1.17 16
27 C -0.06 -0.39 9.60 22.25 0.21 -0.18 16
28 H 0.39 -1.55 8.74 -74.06 -0.65 -2.20 16
29 H 0.10 -0.27 7.96 -2.39 -0.02 -0.29 16
30 H -0.30 -2.37 7.11 99.48 0.71 -1.66 16
31 H -0.28 -0.98 7.11 99.48 0.71 -0.28 16
32 H 0.15 0.02 4.87 -2.91 -0.01 0.00 16
33 H 0.15 0.26 6.30 -2.91 -0.02 0.24 16
34 H 0.10 0.85 6.02 -2.39 -0.01 0.83 16
35 H 0.10 0.11 7.66 -2.39 -0.02 0.09 16
36 H 0.41 -1.57 7.87 -92.71 -0.73 -2.30 16
37 H 0.10 0.04 7.90 -2.39 -0.02 0.02 16
38 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16
39 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16
40 H 0.06 -0.23 7.85 -2.39 -0.02 -0.25 16
41 H 0.40 -2.94 9.12 -74.06 -0.68 -3.62 16
42 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16
43 H 0.11 -0.68 8.10 -2.39 -0.02 -0.70 16
44 H 0.19 -1.75 7.74 -2.91 -0.02 -1.77 16
45 H 0.25 -3.27 8.06 -2.91 -0.02 -3.29 16
46 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16
47 H 0.14 0.55 8.06 -2.91 -0.02 0.52 16
Total: 0.00 -27.76 395.72 -1.82 -29.58
By element:
Atomic # 1 Polarization: -13.07 SS G_CDS: -0.97 Total: -14.04 kcal
Atomic # 6 Polarization: 2.80 SS G_CDS: 4.32 Total: 7.12 kcal
Atomic # 7 Polarization: -1.33 SS G_CDS: -2.33 Total: -3.66 kcal
Atomic # 8 Polarization: -16.12 SS G_CDS: -4.88 Total: -21.00 kcal
Atomic # 14 Polarization: -0.05 SS G_CDS: 2.04 Total: 1.99 kcal
Total: -27.76 -1.82 -29.58 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_13270474_4549634.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.885 kcal
(2) G-P(sol) polarization free energy of solvation -27.763 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds