Wall clock time and date at job start Sat Mar 6 2021 21:31:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35965 * 116.99638 * 2 1
4 4 C 1.39453 * 120.11561 * 179.97438 * 3 2 1
5 5 O 1.34766 * 133.24576 * 359.95303 * 4 3 2
6 6 C 1.34929 * 110.84468 * 180.02562 * 5 4 3
7 7 C 1.46992 * 125.14126 * 180.02562 * 6 5 4
8 8 O 1.21652 * 119.99806 * 179.97438 * 7 6 5
9 9 N 1.34770 * 120.00279 * 359.97438 * 7 6 5
10 10 C 1.46502 * 120.00411 * 180.02562 * 9 7 6
11 11 H 1.09002 * 112.84401 * 23.80150 * 10 9 7
12 12 C 1.53776 * 113.61667 * 154.99814 * 10 9 7
13 13 C 1.53786 * 87.08024 * 89.11741 * 12 10 9
14 14 H 1.09001 * 113.61530 * 270.79823 * 13 12 10
15 15 C 1.52999 * 113.61606 * 139.98240 * 13 12 10
16 16 O 1.42905 * 109.47121 * 174.99916 * 15 13 12
17 17 C 1.53777 * 87.08061 * 25.43020 * 13 12 10
18 18 C 1.35809 * 109.71736 * 0.02562 * 6 5 4
19 19 C 1.40609 * 119.13030 * 179.97438 * 4 3 2
20 20 C 1.39774 * 120.12668 * 0.02562 * 19 4 3
21 21 C 1.50692 * 120.09964 * 179.97438 * 20 19 4
22 22 O 1.42901 * 109.46894 * 75.00231 * 21 20 19
23 23 Si 1.86295 * 109.47529 * 195.00240 * 21 20 19
24 24 C 1.36635 * 119.80651 * 359.97438 * 20 19 4
25 25 C 1.38260 * 120.12167 * 359.72551 * 3 2 1
26 26 H 1.08996 * 109.47352 * 299.99786 * 1 2 3
27 27 H 1.08996 * 109.47452 * 60.00239 * 1 2 3
28 28 H 1.09005 * 109.47329 * 179.97438 * 1 2 3
29 29 H 0.97006 * 119.99990 * 359.97438 * 9 7 6
30 30 H 1.08998 * 113.61755 * 203.66429 * 12 10 9
31 31 H 1.09003 * 113.61517 * 334.57230 * 12 10 9
32 32 H 1.08999 * 109.46983 * 295.00083 * 15 13 12
33 33 H 1.08996 * 109.47296 * 54.99940 * 15 13 12
34 34 H 0.96698 * 113.99384 * 179.97438 * 16 15 13
35 35 H 1.09007 * 113.61722 * 220.01969 * 17 13 12
36 36 H 1.09004 * 113.61234 * 89.11899 * 17 13 12
37 37 H 1.08003 * 126.95535 * 180.02562 * 18 6 5
38 38 H 1.09008 * 109.47424 * 315.00213 * 21 20 19
39 39 H 0.96696 * 113.99916 * 60.00153 * 22 21 20
40 40 H 1.48505 * 110.00360 * 180.02562 * 23 21 20
41 41 H 1.48504 * 110.00003 * 301.32074 * 23 21 20
42 42 H 1.08003 * 119.74591 * 180.02562 * 24 20 19
43 43 H 1.07999 * 119.66404 * 0.02562 * 25 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2115 0.0000
4 6 3.4387 1.2874 0.0005
5 8 4.4140 0.3574 0.0019
6 6 5.6317 0.9387 0.0024
7 6 6.9131 0.2185 0.0034
8 8 7.9595 0.8389 0.0033
9 7 6.9287 -1.1291 0.0043
10 6 8.2058 -1.8469 0.0058
11 1 9.0247 -1.2528 0.4114
12 6 8.1167 -3.2615 0.6022
13 6 7.7812 -3.7531 -0.8159
14 1 6.7147 -3.7416 -1.0411
15 6 8.4507 -5.0800 -1.1790
16 8 7.9900 -5.5108 -2.4614
17 6 8.5362 -2.5191 -1.3373
18 6 5.4944 2.2899 0.0020
19 6 4.0553 2.5510 0.0000
20 6 3.2765 3.7117 -0.0006
21 6 3.9380 5.0657 -0.0006
22 8 4.4608 5.3403 -1.3018
23 14 2.6861 6.3685 0.4533
24 6 1.9136 3.6151 -0.0011
25 6 1.2956 2.3726 -0.0057
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3634 -1.0277 -0.0005
29 1 6.0943 -1.6238 0.0047
30 1 9.0675 -3.6366 0.9807
31 1 7.2988 -3.3854 1.3121
32 1 9.5320 -4.9455 -1.2078
33 1 8.1978 -5.8313 -0.4309
34 1 8.3743 -6.3476 -2.7565
35 1 8.0571 -2.0434 -2.1932
36 1 9.6018 -2.6911 -1.4891
37 1 6.2874 3.0231 0.0018
38 1 4.7502 5.0733 0.7264
39 1 3.7923 5.3493 -2.0004
40 1 3.3260 7.7087 0.4562
41 1 1.5579 6.3470 -0.5120
42 1 1.3127 4.5125 -0.0019
43 1 0.2173 2.3120 -0.0098
There are 61 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 61
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_13270474_6672420.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 21:31:07
Heat of formation + Delta-G solvation = -84.232428 kcal
Electronic energy + Delta-G solvation = -28498.850358 eV
Core-core repulsion = 24286.044097 eV
Total energy + Delta-G solvation = -4212.806261 eV
No. of doubly occupied orbitals = 61
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 334.134 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-43.65448 -41.35166 -40.64289 -39.49482 -39.11406 -37.29832 -37.08319 -34.45711
-33.55108 -31.91590 -31.00015 -29.12414 -28.51312 -26.79730 -26.36745 -25.27381
-23.94912 -23.33958 -22.10203 -21.66582 -20.34551 -19.81962 -19.00182 -18.58760
-18.27514 -17.81673 -17.66039 -17.20108 -16.99770 -16.64182 -16.28407 -16.20886
-16.01037 -15.84171 -15.57029 -15.50884 -14.83545 -14.64103 -14.56470 -14.46468
-14.07924 -13.60231 -13.57717 -13.45508 -13.42439 -13.31513 -13.10985 -12.62262
-12.34485 -12.13276 -11.92241 -11.70668 -11.67368 -11.47731 -11.38605 -10.93232
-10.87512 -10.60585 -10.20638 -9.75828 -8.98585 -4.99671 -0.57712 0.12733
0.72477 1.21775 1.30774 1.52594 1.92117 1.93339 2.05776 2.06645
2.41088 3.08534 3.22328 3.37147 3.38646 3.51485 3.57936 3.61320
3.75051 3.84089 3.87887 4.01272 4.02189 4.09374 4.09646 4.19014
4.31072 4.44155 4.45526 4.47858 4.48692 4.51005 4.61636 4.65344
4.72587 4.84572 4.90079 5.00780 5.01731 5.07710 5.09377 5.24162
5.31903 5.46723 5.65350 6.16356 6.35010 6.39848 6.65281 6.95246
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.311 6.311
3 C 0.151 3.849
4 C 0.046 3.954
5 O -0.174 6.174
6 C -0.024 4.024
7 C 0.605 3.395
8 O -0.507 6.507
9 N -0.700 5.700
10 C 0.117 3.883
11 H 0.111 0.889
12 C -0.137 4.137
13 C -0.113 4.113
14 H 0.098 0.902
15 C 0.084 3.916
16 O -0.574 6.574
17 C -0.143 4.143
18 C -0.103 4.103
19 C -0.082 4.082
20 C -0.095 4.095
21 C -0.074 4.074
22 O -0.525 6.525
23 Si 0.692 3.308
24 C -0.096 4.096
25 C -0.178 4.178
26 H 0.061 0.939
27 H 0.060 0.940
28 H 0.105 0.895
29 H 0.409 0.591
30 H 0.101 0.899
31 H 0.079 0.921
32 H 0.049 0.951
33 H 0.047 0.953
34 H 0.380 0.620
35 H 0.075 0.925
36 H 0.095 0.905
37 H 0.175 0.825
38 H 0.119 0.881
39 H 0.375 0.625
40 H -0.255 1.255
41 H -0.258 1.258
42 H 0.140 0.860
43 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.492 -2.919 2.771 6.032
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.224 6.224
3 C 0.105 3.895
4 C -0.002 4.002
5 O -0.075 6.075
6 C -0.074 4.074
7 C 0.391 3.609
8 O -0.384 6.384
9 N -0.350 5.350
10 C 0.012 3.988
11 H 0.129 0.871
12 C -0.175 4.175
13 C -0.132 4.132
14 H 0.116 0.884
15 C 0.007 3.993
16 O -0.379 6.379
17 C -0.181 4.181
18 C -0.123 4.123
19 C -0.083 4.083
20 C -0.095 4.095
21 C -0.183 4.183
22 O -0.331 6.331
23 Si 0.593 3.407
24 C -0.114 4.114
25 C -0.197 4.197
26 H 0.080 0.920
27 H 0.078 0.922
28 H 0.124 0.876
29 H 0.245 0.755
30 H 0.119 0.881
31 H 0.098 0.902
32 H 0.067 0.933
33 H 0.066 0.934
34 H 0.228 0.772
35 H 0.093 0.907
36 H 0.113 0.887
37 H 0.192 0.808
38 H 0.137 0.863
39 H 0.223 0.777
40 H -0.180 1.180
41 H -0.183 1.183
42 H 0.158 0.842
43 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -3.888 -1.667 2.903 5.131
hybrid contribution -0.298 -0.960 -1.248 1.602
sum -4.186 -2.627 1.655 5.212
Atomic orbital electron populations
1.23191 0.77306 1.04771 1.01792 1.86177 1.22170 1.25687 1.88353
1.17749 0.86502 0.85887 0.99378 1.18778 0.87451 0.86975 1.07003
1.84051 1.12660 1.34732 1.76097 1.21939 0.83841 0.92593 1.09036
1.16592 0.85457 0.82042 0.76815 1.90921 1.30312 1.67396 1.49732
1.45563 1.09831 1.05582 1.74056 1.21922 0.86428 0.92685 0.97748
0.87146 1.23340 1.03599 0.94356 0.96238 1.22629 1.01036 0.93469
0.96017 0.88419 1.22187 0.97104 0.95254 0.84801 1.86497 1.71491
1.44206 1.35754 1.23490 1.01350 0.95812 0.97495 1.22752 0.94779
0.94292 1.00504 1.19405 0.92611 0.92049 1.04208 1.19400 0.92812
0.94324 1.03007 1.25033 1.06857 0.97945 0.88495 1.86640 1.37584
1.92648 1.16251 0.94898 0.77531 0.77859 0.90395 1.20587 0.93483
0.97801 0.99515 1.20966 1.00359 0.90529 1.07810 0.92007 0.92160
0.87632 0.75534 0.88070 0.90198 0.93290 0.93439 0.77246 0.90664
0.88685 0.80769 0.86339 0.77709 1.17984 1.18323 0.84240 0.83493
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.06 9.81 101.05 0.99 0.93 16
2 O -0.31 -0.49 10.50 -19.63 -0.21 -0.70 16
3 C 0.15 0.27 6.70 -39.12 -0.26 0.01 16
4 C 0.05 0.15 7.35 -38.24 -0.28 -0.13 16
5 O -0.17 -0.62 10.28 2.68 0.03 -0.60 16
6 C -0.02 -0.08 7.07 -36.91 -0.26 -0.34 16
7 C 0.61 2.17 7.80 -12.72 -0.10 2.07 16
8 O -0.51 -3.21 16.42 5.23 0.09 -3.13 16
9 N -0.70 -0.73 5.26 -54.23 -0.29 -1.02 16
10 C 0.12 0.02 4.32 -67.12 -0.29 -0.27 16
11 H 0.11 0.12 7.46 -51.93 -0.39 -0.27 16
12 C -0.14 0.25 7.39 -25.92 -0.19 0.06 16
13 C -0.11 0.07 3.89 -89.81 -0.35 -0.28 16
14 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16
15 C 0.08 -0.07 6.88 37.16 0.26 0.18 16
16 O -0.57 -0.51 13.66 -35.23 -0.48 -0.99 16
17 C -0.14 -0.03 7.43 -25.92 -0.19 -0.22 16
18 C -0.10 -0.33 10.68 -37.23 -0.40 -0.72 16
19 C -0.08 -0.22 6.16 -105.21 -0.65 -0.87 16
20 C -0.09 -0.08 5.26 -104.63 -0.55 -0.63 16
21 C -0.07 -0.01 2.70 36.00 0.10 0.09 16
22 O -0.53 -0.85 12.88 -35.23 -0.45 -1.30 16
23 Si 0.69 -0.95 30.25 -169.99 -5.14 -6.09 16
24 C -0.10 0.06 8.62 -39.96 -0.34 -0.28 16
25 C -0.18 0.09 9.03 -39.38 -0.36 -0.26 16
26 H 0.06 -0.24 7.67 -51.93 -0.40 -0.64 16
27 H 0.06 -0.22 7.65 -51.93 -0.40 -0.62 16
28 H 0.11 -0.41 8.14 -51.93 -0.42 -0.83 16
29 H 0.41 -0.14 8.42 -40.82 -0.34 -0.48 16
30 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16
31 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16
32 H 0.05 -0.09 7.84 -51.93 -0.41 -0.49 16
33 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16
34 H 0.38 -1.25 9.12 45.56 0.42 -0.84 16
35 H 0.07 0.13 8.14 -51.92 -0.42 -0.29 16
36 H 0.09 -0.05 7.90 -51.93 -0.41 -0.46 16
37 H 0.17 0.44 8.06 -52.48 -0.42 0.01 16
38 H 0.12 -0.04 7.96 -51.92 -0.41 -0.45 16
39 H 0.38 -0.51 8.70 45.56 0.40 -0.11 16
40 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16
41 H -0.26 0.05 6.69 56.52 0.38 0.43 16
42 H 0.14 -0.36 4.81 -52.48 -0.25 -0.61 16
43 H 0.15 -0.48 6.26 -52.49 -0.33 -0.81 16
LS Contribution 364.80 15.07 5.50 5.50
Total: 0.00 -9.27 364.80 -8.54 -17.81
By element:
Atomic # 1 Polarization: -4.11 SS G_CDS: -4.70 Total: -8.82 kcal
Atomic # 6 Polarization: 2.21 SS G_CDS: -2.88 Total: -0.66 kcal
Atomic # 7 Polarization: -0.73 SS G_CDS: -0.29 Total: -1.02 kcal
Atomic # 8 Polarization: -5.69 SS G_CDS: -1.03 Total: -6.72 kcal
Atomic # 14 Polarization: -0.95 SS G_CDS: -5.14 Total: -6.09 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -9.27 -8.54 -17.81 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_13270474_6672420.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.423 kcal
(2) G-P(sol) polarization free energy of solvation -9.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.810 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds