Wall clock time and date at job start Sat Mar 6 2021 21:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36766 * 125.80613 * 2 1 4 4 C 1.47268 * 126.94269 * 359.97438 * 3 2 1 5 5 O 1.21627 * 119.99377 * 0.02562 * 4 3 2 6 6 N 1.34767 * 120.00052 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00219 * 180.02562 * 6 4 3 8 8 H 1.09005 * 112.84793 * 25.32998 * 7 6 4 9 9 C 1.53779 * 113.61801 * 156.53209 * 7 6 4 10 10 C 1.53777 * 87.08101 * 89.11442 * 9 7 6 11 11 H 1.08995 * 113.61612 * 270.88234 * 10 9 7 12 12 C 1.53005 * 113.61205 * 139.98087 * 10 9 7 13 13 O 1.42902 * 109.47047 * 174.99840 * 12 10 9 14 14 C 1.53785 * 113.61385 * 254.13959 * 7 6 4 15 15 C 1.46692 * 106.11671 * 180.02562 * 3 2 1 16 16 C 1.34482 * 106.33230 * 0.24101 * 15 3 2 17 17 C 1.50702 * 125.57246 * 179.76004 * 16 15 3 18 18 O 1.42900 * 109.46883 * 299.99709 * 17 16 15 19 19 Si 1.86301 * 109.46986 * 180.02562 * 17 16 15 20 20 N 1.34662 * 125.79586 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47104 * 89.99796 * 1 2 3 22 22 H 1.08998 * 109.47468 * 210.00123 * 1 2 3 23 23 H 1.08997 * 109.46759 * 330.00172 * 1 2 3 24 24 H 0.97004 * 120.00268 * 0.02562 * 6 4 3 25 25 H 1.09003 * 113.60864 * 203.66337 * 9 7 6 26 26 H 1.08998 * 113.61453 * 334.56574 * 9 7 6 27 27 H 1.09000 * 109.47035 * 294.99709 * 12 10 9 28 28 H 1.08998 * 109.47407 * 54.99848 * 12 10 9 29 29 H 0.96699 * 113.99590 * 180.02562 * 13 12 10 30 30 H 1.08999 * 113.61211 * 25.43153 * 14 7 6 31 31 H 1.09003 * 113.61431 * 156.33032 * 14 7 6 32 32 H 1.08002 * 126.83095 * 179.97438 * 15 3 2 33 33 H 1.09002 * 109.46802 * 59.99997 * 17 16 15 34 34 H 0.96693 * 114.00412 * 299.99812 * 18 17 16 35 35 H 1.48503 * 110.00167 * 58.68139 * 19 17 16 36 36 H 1.48506 * 109.99666 * 180.02562 * 19 17 16 37 37 H 0.96996 * 124.85569 * 359.97095 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8704 2.5156 -0.0005 5 8 0.6841 2.7839 -0.0006 6 7 2.7852 3.5052 -0.0010 7 6 2.3508 4.9044 -0.0009 8 1 1.3583 5.0394 0.4292 9 6 3.4026 5.8760 0.5597 10 6 3.9473 5.9896 -0.8739 11 1 4.7070 5.2454 -1.1126 12 6 4.3630 7.4103 -1.2608 13 8 4.9605 7.3950 -2.5589 14 6 2.5353 5.6067 -1.3565 15 6 3.6883 0.6149 -0.0006 16 6 3.6096 -0.7276 -0.0064 17 6 4.7819 -1.6745 -0.0143 18 8 5.5720 -1.4446 -1.1826 19 14 4.1612 -3.4311 -0.0210 20 7 2.2947 -1.0923 -0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.7313 3.2912 -0.0013 25 1 2.9792 6.8054 0.9408 26 1 4.0999 5.4104 1.2561 27 1 3.4845 8.0554 -1.2728 28 1 5.0820 7.7891 -0.5344 29 1 5.2492 8.2641 -2.8691 30 1 2.5329 4.9238 -2.2060 31 1 1.8753 6.4626 -1.4983 32 1 4.5891 1.2107 -0.0012 33 1 5.3902 -1.5070 0.8746 34 1 5.0939 -1.5755 -2.0128 35 1 3.3047 -3.6626 -1.2118 36 1 5.3079 -4.3748 -0.0282 37 1 1.9733 -2.0074 -0.0005 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270474_9865296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:31:23 Heat of formation + Delta-G solvation = -53.672082 kcal Electronic energy + Delta-G solvation = -20313.629890 eV Core-core repulsion = 17058.765720 eV Total energy + Delta-G solvation = -3254.864170 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.51586 -41.03837 -39.29438 -37.91500 -37.22255 -34.37671 -32.82725 -32.05440 -29.09374 -28.67670 -26.69748 -25.73080 -24.04411 -22.93546 -21.58905 -20.75972 -20.18017 -18.77085 -18.22800 -17.87180 -17.03539 -16.94061 -16.66458 -16.17979 -15.91534 -15.59858 -15.43485 -15.02756 -14.81739 -14.53930 -14.37270 -13.98182 -13.85699 -13.47338 -13.40959 -13.37083 -13.01461 -12.77003 -12.62854 -12.15725 -11.79388 -11.63167 -11.38232 -11.04496 -10.78143 -10.65243 -10.13819 -9.82450 -9.17961 -5.07152 0.66912 1.09392 1.27755 1.45875 1.80817 2.01909 2.36981 2.48446 3.23729 3.30892 3.48879 3.64692 3.70534 3.84202 3.87339 4.06759 4.13800 4.21922 4.41186 4.49130 4.53977 4.56231 4.65363 4.70544 4.73413 4.75705 4.77339 4.85622 5.01415 5.03797 5.13684 5.19651 5.29499 5.63874 5.67381 5.83426 6.38276 6.43474 6.61908 6.89479 7.31412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.121 3.879 3 C -0.267 4.267 4 C 0.589 3.411 5 O -0.585 6.585 6 N -0.701 5.701 7 C 0.115 3.885 8 H 0.088 0.912 9 C -0.121 4.121 10 C -0.109 4.109 11 H 0.088 0.912 12 C 0.081 3.919 13 O -0.599 6.599 14 C -0.146 4.146 15 C -0.139 4.139 16 C -0.020 4.020 17 C -0.049 4.049 18 O -0.540 6.540 19 Si 0.758 3.242 20 N -0.533 5.533 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.082 0.918 24 H 0.410 0.590 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.395 0.605 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.387 0.613 35 H -0.276 1.276 36 H -0.293 1.293 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 -1.089 3.047 3.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.001 3.999 3 C -0.277 4.277 4 C 0.379 3.621 5 O -0.467 6.467 6 N -0.351 5.351 7 C 0.009 3.991 8 H 0.106 0.894 9 C -0.159 4.159 10 C -0.128 4.128 11 H 0.106 0.894 12 C 0.004 3.996 13 O -0.408 6.408 14 C -0.184 4.184 15 C -0.163 4.163 16 C -0.128 4.128 17 C -0.158 4.158 18 O -0.348 6.348 19 Si 0.661 3.339 20 N -0.134 5.134 21 H 0.099 0.901 22 H 0.114 0.886 23 H 0.101 0.899 24 H 0.246 0.754 25 H 0.131 0.869 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.245 0.755 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.236 0.764 35 H -0.202 1.202 36 H -0.220 1.220 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.544 -2.301 3.123 3.917 hybrid contribution 0.720 0.664 -1.400 1.708 sum 1.264 -1.637 1.723 2.692 Atomic orbital electron populations 1.20627 0.85963 1.04901 1.03938 1.20564 0.94334 0.85526 0.99488 1.20182 0.94257 0.91646 1.21625 1.17632 0.84984 0.84973 0.74481 1.90719 1.18021 1.84973 1.52989 1.45379 1.09955 1.04856 1.74936 1.21834 0.99383 0.80429 0.97437 0.89354 1.23265 0.97294 0.99852 0.95496 1.22607 0.96437 0.97075 0.96635 0.89371 1.22290 0.97025 0.96234 0.84085 1.86451 1.82023 1.37277 1.35017 1.23537 0.97338 1.00560 0.97005 1.21946 0.95319 0.93303 1.05727 1.20625 0.84760 0.95467 1.11993 1.24665 0.92107 1.07268 0.91780 1.86626 1.40474 1.91170 1.16513 0.94615 0.80945 0.71750 0.86549 1.41683 1.05169 1.08785 1.57751 0.90070 0.88637 0.89916 0.75409 0.86897 0.89430 0.92450 0.92165 0.75496 0.93017 0.88564 0.82764 0.84243 0.76373 1.20214 1.21974 0.73134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.05 9.88 71.24 0.70 0.65 16 2 C 0.12 0.30 7.17 41.78 0.30 0.60 16 3 C -0.27 -1.53 6.29 -19.04 -0.12 -1.65 16 4 C 0.59 5.47 7.81 86.62 0.68 6.14 16 5 O -0.58 -9.12 14.43 -4.12 -0.06 -9.18 16 6 N -0.70 -2.73 5.26 -443.45 -2.33 -5.06 16 7 C 0.11 0.33 4.30 45.52 0.20 0.52 16 8 H 0.09 0.55 7.50 -2.38 -0.02 0.53 16 9 C -0.12 0.35 7.38 31.12 0.23 0.58 16 10 C -0.11 0.01 3.90 -10.18 -0.04 -0.02 16 11 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 12 C 0.08 -0.11 6.89 71.98 0.50 0.39 16 13 O -0.60 -1.41 13.66 -148.98 -2.04 -3.45 16 14 C -0.15 -0.43 7.45 31.21 0.23 -0.20 16 15 C -0.14 -0.25 10.43 23.62 0.25 -0.01 16 16 C -0.02 0.03 6.11 40.98 0.25 0.28 16 17 C -0.05 0.18 2.98 71.24 0.21 0.39 16 18 O -0.54 0.03 12.87 -148.98 -1.92 -1.88 16 19 Si 0.76 -4.40 30.94 68.60 2.12 -2.27 16 20 N -0.53 1.40 5.41 -171.06 -0.93 0.48 16 21 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 22 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 23 H 0.08 0.47 6.47 -2.39 -0.02 0.45 16 24 H 0.41 -0.09 7.83 -92.70 -0.73 -0.82 16 25 H 0.11 -0.64 8.10 -2.39 -0.02 -0.66 16 26 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.06 -0.19 7.85 -2.39 -0.02 -0.21 16 28 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.40 -2.44 9.12 -74.06 -0.68 -3.12 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.14 7.90 -2.39 -0.02 0.12 16 32 H 0.15 -0.12 7.70 -2.91 -0.02 -0.15 16 33 H 0.14 -0.81 7.96 -2.39 -0.02 -0.82 16 34 H 0.39 -1.92 8.70 -74.06 -0.64 -2.56 16 35 H -0.28 0.63 7.11 99.48 0.71 1.34 16 36 H -0.29 -0.68 7.11 99.48 0.71 0.02 16 37 H 0.43 -3.58 6.70 -92.71 -0.62 -4.20 16 Total: 0.00 -21.23 312.04 -3.26 -24.49 By element: Atomic # 1 Polarization: -9.30 SS G_CDS: -1.50 Total: -10.80 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 3.38 Total: 7.68 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -3.26 Total: -4.58 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -4.01 Total: -14.51 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: 2.12 Total: -2.27 kcal Total: -21.23 -3.26 -24.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270474_9865296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.181 kcal (2) G-P(sol) polarization free energy of solvation -21.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds