Wall clock time and date at job start Sat Mar 6 2021 21:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86297 * 109.47028 * 2 1 4 4 C 1.50706 * 109.46649 * 239.99974 * 2 1 3 5 5 C 1.35451 * 126.06512 * 119.97427 * 4 2 1 6 6 N 1.35530 * 108.86841 * 180.22399 * 5 4 2 7 7 C 1.37649 * 108.64748 * 359.63172 * 6 5 4 8 8 C 1.46671 * 126.23511 * 180.17165 * 7 6 5 9 9 O 1.21692 * 120.00282 * 180.22132 * 8 7 6 10 10 N 1.34780 * 119.99932 * 0.22868 * 8 7 6 11 11 C 1.46507 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.84854 * 336.19851 * 11 10 8 13 13 C 1.53779 * 113.61235 * 107.49949 * 11 10 8 14 14 C 1.53777 * 87.07973 * 139.98111 * 13 11 10 15 15 C 1.53001 * 113.69075 * 89.12754 * 14 13 11 16 16 O 1.42896 * 109.46896 * 82.46979 * 15 14 13 17 17 C 1.50700 * 113.61707 * 220.02313 * 14 13 11 18 18 C 1.38233 * 119.99710 * 331.52015 * 17 14 13 19 19 C 1.38238 * 120.00166 * 179.74473 * 18 17 14 20 20 C 1.38244 * 119.99586 * 0.55411 * 19 18 17 21 21 C 1.38226 * 119.99946 * 359.70242 * 20 19 18 22 22 C 1.38237 * 120.00254 * 151.79790 * 17 14 13 23 23 C 1.53776 * 87.08382 * 334.56737 * 14 13 11 24 24 C 1.37868 * 107.52996 * 0.36605 * 7 6 5 25 25 H 0.96699 * 113.99479 * 299.99526 * 1 2 3 26 26 H 1.08998 * 109.47068 * 120.00244 * 2 1 3 27 27 H 1.48501 * 109.99954 * 178.68658 * 3 2 1 28 28 H 1.48505 * 109.99887 * 299.99957 * 3 2 1 29 29 H 1.07996 * 125.56282 * 359.96183 * 5 4 2 30 30 H 0.97004 * 125.67282 * 179.76532 * 6 5 4 31 31 H 0.97001 * 120.00159 * 359.97438 * 10 8 7 32 32 H 1.09001 * 113.61692 * 254.52997 * 13 11 10 33 33 H 1.09006 * 113.61158 * 25.43956 * 13 11 10 34 34 H 1.09005 * 109.47158 * 202.46310 * 15 14 13 35 35 H 1.08999 * 109.47145 * 322.46443 * 15 14 13 36 36 H 0.96702 * 113.99852 * 180.02562 * 16 15 14 37 37 H 1.08004 * 120.00415 * 0.02562 * 18 17 14 38 38 H 1.07995 * 120.00424 * 180.27983 * 19 18 17 39 39 H 1.07997 * 119.99839 * 179.72348 * 20 19 18 40 40 H 1.08006 * 119.99962 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.99886 * 0.02562 * 22 17 14 42 42 H 1.09005 * 113.61622 * 270.88540 * 23 14 13 43 43 H 1.09003 * 113.61883 * 139.97917 * 23 14 13 44 44 H 1.08003 * 126.45862 * 179.79944 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7128 -0.1738 -2.1980 6 7 2.9514 -1.1167 -3.1419 7 6 2.3190 -2.2815 -2.7702 8 6 2.3269 -3.5469 -3.5117 9 8 1.7224 -4.5100 -3.0782 10 7 3.0037 -3.6431 -4.6733 11 6 3.0120 -4.9073 -5.4137 12 1 2.8157 -5.7711 -4.7785 13 6 2.1619 -4.8765 -6.6947 14 6 3.2824 -5.6898 -7.3639 15 6 3.1111 -7.2036 -7.2235 16 8 2.2098 -7.6760 -8.2268 17 6 3.5758 -5.2627 -8.7790 18 6 2.5768 -4.7027 -9.5531 19 6 2.8472 -4.3061 -10.8495 20 6 4.1138 -4.4801 -11.3756 21 6 5.1113 -5.0451 -10.6032 22 6 4.8424 -5.4364 -9.3049 23 6 4.2383 -5.0791 -6.3256 24 6 1.6733 -2.0406 -1.5762 25 1 -0.3932 0.4417 0.7651 26 1 1.7924 -0.5139 0.8899 27 1 3.5346 1.7703 0.0320 28 1 1.5615 2.4679 -1.2085 29 1 3.0817 0.8410 -2.2165 30 1 3.4815 -0.9920 -3.9447 31 1 3.4854 -2.8754 -5.0191 32 1 1.2207 -5.4193 -6.6074 33 1 2.0383 -3.8774 -7.1128 34 1 4.0782 -7.6916 -7.3451 35 1 2.7095 -7.4339 -6.2367 36 1 2.0535 -8.6299 -8.1974 37 1 1.5862 -4.5707 -9.1436 38 1 2.0680 -3.8644 -11.4528 39 1 4.3239 -4.1744 -12.3898 40 1 6.1007 -5.1814 -11.0144 41 1 5.6215 -5.8784 -8.7018 42 1 4.6823 -4.1354 -6.6426 43 1 4.9735 -5.7856 -5.9402 44 1 1.0802 -2.7464 -1.0135 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_10543058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:31:30 Heat of formation + Delta-G solvation = -14.417153 kcal Electronic energy + Delta-G solvation = -27291.687480 eV Core-core repulsion = 23370.083351 eV Total energy + Delta-G solvation = -3921.604130 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.64429 -41.78946 -40.17947 -38.96757 -37.58699 -37.22728 -35.01237 -32.82139 -31.88709 -31.80914 -30.80279 -28.34367 -27.03452 -26.54817 -25.12609 -24.08823 -23.20337 -22.27507 -21.43078 -20.84206 -20.06468 -19.40866 -18.50212 -18.26739 -18.03003 -17.44192 -17.02924 -16.44771 -16.21693 -16.09067 -15.80156 -15.57800 -15.39887 -15.12544 -15.05644 -14.84575 -14.45863 -14.36321 -14.30552 -14.10580 -13.77736 -13.50866 -13.44865 -13.39805 -13.16467 -12.53554 -12.48054 -12.33269 -12.14247 -11.94344 -11.57160 -11.41152 -11.37713 -10.86254 -10.34932 -10.32230 -9.94842 -9.82040 -9.60635 -9.43542 -4.86987 0.20439 0.45073 0.49844 1.29439 1.45097 1.76339 1.81591 1.98072 2.05502 2.13315 2.85638 2.99228 3.23267 3.54205 3.59596 3.62848 3.69973 3.83307 3.87434 3.99208 4.03346 4.13239 4.14451 4.22631 4.27217 4.35685 4.45180 4.49800 4.59507 4.62451 4.62949 4.71330 4.72506 4.77112 4.86063 4.91543 4.92046 4.97828 5.13387 5.14872 5.32792 5.44792 5.58290 5.60197 5.62794 5.69398 6.11060 6.19346 6.37105 6.84330 6.94053 7.01406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.572 6.572 2 C -0.057 4.057 3 Si 0.787 3.213 4 C -0.189 4.189 5 C 0.033 3.967 6 N -0.515 5.515 7 C -0.064 4.064 8 C 0.592 3.408 9 O -0.569 6.569 10 N -0.703 5.703 11 C 0.122 3.878 12 H 0.106 0.894 13 C -0.137 4.137 14 C -0.038 4.038 15 C 0.098 3.902 16 O -0.586 6.586 17 C -0.056 4.056 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.101 4.101 25 H 0.400 0.600 26 H 0.079 0.921 27 H -0.280 1.280 28 H -0.292 1.292 29 H 0.189 0.811 30 H 0.436 0.564 31 H 0.411 0.589 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.395 0.605 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 4.074 0.814 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.381 6.381 2 C -0.167 4.167 3 Si 0.691 3.309 4 C -0.195 4.195 5 C -0.105 4.105 6 N -0.113 5.113 7 C -0.178 4.178 8 C 0.381 3.619 9 O -0.448 6.448 10 N -0.354 5.354 11 C 0.017 3.983 12 H 0.124 0.876 13 C -0.175 4.175 14 C -0.039 4.039 15 C 0.020 3.980 16 O -0.394 6.394 17 C -0.056 4.056 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.128 4.128 25 H 0.250 0.750 26 H 0.097 0.903 27 H -0.206 1.206 28 H -0.219 1.219 29 H 0.206 0.794 30 H 0.278 0.722 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.245 0.755 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.492 4.238 -0.180 6.939 hybrid contribution 0.077 -0.947 -0.654 1.154 sum 5.569 3.291 -0.835 6.522 Atomic orbital electron populations 1.86463 1.18142 1.82490 1.51002 1.24398 0.85105 1.11378 0.95775 0.93839 0.77525 0.74211 0.85356 1.19247 1.05771 0.94771 0.99709 1.21995 1.02975 0.95325 0.90215 1.41777 1.40348 1.08446 1.20695 1.20265 1.09142 0.87992 1.00363 1.17163 0.78433 0.85807 0.80538 1.90842 1.45634 1.38821 1.69500 1.45698 1.52384 1.15240 1.22054 1.22576 0.97805 0.86940 0.90976 0.87580 1.23538 0.97804 1.00885 0.95314 1.20531 0.97824 0.94269 0.91255 1.21993 0.93481 0.91596 0.90932 1.86472 1.67197 1.29812 1.55920 1.19455 0.93569 0.97837 0.94715 1.21095 0.98952 0.99243 0.94511 1.21372 0.97585 1.00357 0.95741 1.21409 0.93450 0.99893 1.00665 1.21409 1.00015 0.98694 0.94446 1.21160 0.96554 1.00392 0.95932 1.23397 0.95796 1.02822 0.93054 1.21269 1.00004 0.96428 0.95074 0.74973 0.90274 1.20605 1.21882 0.79419 0.72243 0.75263 0.91874 0.89043 0.91759 0.92473 0.75517 0.86659 0.85378 0.84939 0.84559 0.84746 0.87431 0.88409 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.50 12.86 -148.98 -1.92 -3.42 16 2 C -0.06 -0.05 3.01 71.24 0.21 0.16 16 3 Si 0.79 -3.16 30.59 68.60 2.10 -1.07 16 4 C -0.19 -1.08 5.47 -20.12 -0.11 -1.19 16 5 C 0.03 0.04 10.45 83.48 0.87 0.91 16 6 N -0.52 0.62 5.99 -183.64 -1.10 -0.48 16 7 C -0.06 -0.39 7.06 40.35 0.28 -0.11 16 8 C 0.59 4.55 7.79 86.44 0.67 5.23 16 9 O -0.57 -9.36 16.48 -4.32 -0.07 -9.43 16 10 N -0.70 0.32 5.35 -443.99 -2.38 -2.06 16 11 C 0.12 -0.03 3.89 45.52 0.18 0.15 16 12 H 0.11 0.36 6.98 -2.39 -0.02 0.34 16 13 C -0.14 -0.14 5.98 31.12 0.19 0.04 16 14 C -0.04 0.03 0.89 -52.40 -0.05 -0.01 16 15 C 0.10 -0.10 6.39 71.98 0.46 0.36 16 16 O -0.59 -1.29 13.13 -148.98 -1.96 -3.25 16 17 C -0.06 -0.12 4.32 -19.87 -0.09 -0.20 16 18 C -0.12 -0.52 9.02 22.27 0.20 -0.32 16 19 C -0.13 -0.48 10.05 22.27 0.22 -0.25 16 20 C -0.14 -0.31 10.05 22.27 0.22 -0.09 16 21 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 22 C -0.12 -0.10 9.39 22.27 0.21 0.11 16 23 C -0.11 0.55 6.63 31.12 0.21 0.76 16 24 C -0.10 -0.98 10.59 22.57 0.24 -0.74 16 25 H 0.40 -3.31 8.74 -74.06 -0.65 -3.96 16 26 H 0.08 -0.12 7.96 -2.39 -0.02 -0.14 16 27 H -0.28 0.10 7.11 99.48 0.71 0.80 16 28 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 29 H 0.19 -0.69 6.19 -2.91 -0.02 -0.71 16 30 H 0.44 -4.06 8.19 -92.71 -0.76 -4.82 16 31 H 0.41 -2.92 7.86 -92.71 -0.73 -3.65 16 32 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 33 H 0.09 0.05 7.45 -2.38 -0.02 0.04 16 34 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 35 H 0.06 -0.11 7.35 -2.39 -0.02 -0.13 16 36 H 0.40 -2.23 9.12 -74.06 -0.68 -2.90 16 37 H 0.12 0.50 7.03 -2.91 -0.02 0.48 16 38 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 39 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 40 H 0.14 -0.36 8.06 -2.91 -0.02 -0.39 16 41 H 0.13 -0.43 8.03 -2.91 -0.02 -0.45 16 42 H 0.11 -0.77 8.07 -2.38 -0.02 -0.79 16 43 H 0.10 -0.70 8.10 -2.39 -0.02 -0.72 16 44 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 Total: 0.00 -27.39 369.16 -2.87 -30.26 By element: Atomic # 1 Polarization: -13.72 SS G_CDS: -1.70 Total: -15.42 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.15 Total: 4.87 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -3.48 Total: -2.54 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -3.94 Total: -16.10 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.10 Total: -1.07 kcal Total: -27.39 -2.87 -30.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_10543058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.846 kcal (2) G-P(sol) polarization free energy of solvation -27.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds