Wall clock time and date at job start Sat Mar 6 2021 21:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35460 * 125.56199 * 2 1 4 4 C 1.50701 * 126.06490 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.46695 * 234.46425 * 4 3 2 6 6 Si 1.86302 * 109.47249 * 114.46685 * 4 3 2 7 7 C 1.39831 * 107.86714 * 179.73835 * 3 2 1 8 8 C 1.50701 * 126.45905 * 180.24289 * 7 3 2 9 9 C 1.37877 * 107.08435 * 0.26169 * 7 3 2 10 10 C 1.46676 * 126.23580 * 179.97438 * 9 7 3 11 11 O 1.21694 * 119.99757 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00393 * 179.97438 * 10 9 7 13 13 C 1.46495 * 120.00204 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.84800 * 23.81116 * 13 12 10 15 15 C 1.53787 * 113.61400 * 155.00551 * 13 12 10 16 16 C 1.53778 * 87.08244 * 139.98315 * 15 13 12 17 17 C 1.52999 * 113.61236 * 89.19805 * 16 15 13 18 18 O 1.42904 * 109.47345 * 179.97438 * 17 16 15 19 19 C 1.50691 * 113.61471 * 220.01960 * 16 15 13 20 20 C 1.38236 * 120.00100 * 359.72859 * 19 16 15 21 21 C 1.38233 * 119.99991 * 179.76755 * 20 19 16 22 22 C 1.38235 * 120.00213 * 0.50561 * 21 20 19 23 23 C 1.38234 * 119.99839 * 359.74513 * 22 21 20 24 24 C 1.38235 * 120.00240 * 180.02562 * 19 16 15 25 25 C 1.53779 * 113.61743 * 252.50036 * 13 12 10 26 26 N 1.35532 * 125.56818 * 180.19863 * 2 1 3 27 27 H 1.08997 * 109.47322 * 84.66177 * 1 2 3 28 28 H 1.09005 * 109.46836 * 204.66071 * 1 2 3 29 29 H 1.08998 * 109.47146 * 324.65585 * 1 2 3 30 30 H 1.08996 * 109.47094 * 354.46383 * 4 3 2 31 31 H 0.96707 * 113.99448 * 179.97438 * 5 4 3 32 32 H 1.48504 * 109.99880 * 59.99621 * 6 4 3 33 33 H 1.48501 * 109.99994 * 181.31588 * 6 4 3 34 34 H 1.09001 * 109.46926 * 90.00243 * 8 7 3 35 35 H 1.09000 * 109.46956 * 209.99562 * 8 7 3 36 36 H 1.08993 * 109.47074 * 330.00334 * 8 7 3 37 37 H 0.97002 * 119.99483 * 0.02562 * 12 10 9 38 38 H 1.09000 * 113.61414 * 254.53563 * 15 13 12 39 39 H 1.09003 * 113.61131 * 25.43265 * 15 13 12 40 40 H 1.08998 * 109.47519 * 300.00384 * 17 16 15 41 41 H 1.09001 * 109.47002 * 60.00176 * 17 16 15 42 42 H 0.96700 * 114.00391 * 180.02562 * 18 17 16 43 43 H 1.07997 * 120.00169 * 359.97438 * 20 19 16 44 44 H 1.08003 * 120.00141 * 180.22239 * 21 20 19 45 45 H 1.08006 * 120.00538 * 179.72250 * 22 21 20 46 46 H 1.08004 * 120.00593 * 179.97438 * 23 22 21 47 47 H 1.08005 * 119.99682 * 0.02562 * 24 19 16 48 48 H 1.08996 * 113.61656 * 334.56943 * 25 13 12 49 49 H 1.09000 * 113.61050 * 105.47265 * 25 13 12 50 50 H 0.97003 * 125.67816 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1020 0.0000 4 6 1.8198 2.5321 0.0005 5 8 2.4125 3.2312 -1.0959 6 14 2.3150 3.3504 1.5993 7 6 3.6270 0.6769 0.0061 8 6 4.8485 1.5595 0.0134 9 6 3.6123 -0.7017 0.0037 10 6 4.7861 -1.5813 0.0076 11 8 5.9049 -1.1028 0.0141 12 7 4.6255 -2.9194 0.0051 13 6 5.7979 -3.7979 0.0085 14 1 6.6860 -3.3168 0.4183 15 6 5.5227 -5.1902 0.6009 16 6 6.4093 -5.7562 -0.5208 17 6 7.8915 -5.8351 -0.1496 18 8 8.6301 -6.3711 -1.2493 19 6 5.8858 -7.0381 -1.1153 20 6 4.7136 -7.5935 -0.6375 21 6 4.2308 -8.7669 -1.1860 22 6 4.9258 -9.3906 -2.2053 23 6 6.1008 -8.8381 -2.6795 24 6 6.5811 -7.6621 -2.1341 25 6 6.0421 -4.5045 -1.3353 26 7 2.2954 -1.1024 -0.0038 27 1 -0.3634 0.0956 -1.0232 28 1 -0.3633 -0.9340 0.4288 29 1 -0.3633 0.8382 0.5945 30 1 0.7346 2.5546 -0.0982 31 1 2.1504 4.1600 -1.1579 32 1 3.7926 3.3263 1.7458 33 1 1.8248 4.7519 1.6257 34 1 5.1379 1.7708 1.0428 35 1 5.6668 1.0515 -0.4970 36 1 4.6244 2.4943 -0.5002 37 1 3.7336 -3.3008 0.0003 38 1 5.9384 -5.3301 1.5987 39 1 4.4791 -5.4966 0.5293 40 1 8.2611 -4.8368 0.0847 41 1 8.0145 -6.4813 0.7195 42 1 9.5796 -6.4501 -1.0842 43 1 4.1731 -7.1088 0.1621 44 1 3.3130 -9.1989 -0.8152 45 1 4.5511 -10.3098 -2.6308 46 1 6.6442 -9.3255 -3.4756 47 1 7.4998 -7.2310 -2.5039 48 1 5.1406 -4.6236 -1.9362 49 1 6.8773 -4.0909 -1.9005 50 1 1.9835 -2.0210 -0.0074 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_12297754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:31:43 Heat of formation + Delta-G solvation = -18.192563 kcal Electronic energy + Delta-G solvation = -31865.769869 eV Core-core repulsion = 27632.926787 eV Total energy + Delta-G solvation = -4232.843082 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.65709 -41.79691 -40.11390 -38.87896 -37.78185 -37.26477 -35.01777 -33.78096 -32.96357 -31.75703 -31.64528 -29.23130 -28.56043 -27.33639 -26.97752 -26.36308 -24.63892 -23.27366 -22.87248 -22.02018 -20.81838 -20.08227 -19.78385 -19.09766 -18.63926 -18.39062 -17.79064 -17.13583 -16.78047 -16.47107 -16.22919 -16.04908 -15.82061 -15.51815 -15.49099 -15.29230 -15.15854 -14.66160 -14.48156 -14.31115 -14.20399 -14.11056 -13.84497 -13.61474 -13.53253 -13.49985 -13.37021 -13.23796 -13.15209 -13.03154 -12.53775 -12.48363 -12.41297 -12.26085 -11.86890 -11.83616 -11.56451 -11.37037 -11.07202 -10.78884 -10.67157 -10.22751 -9.76052 -9.54217 -9.47707 -8.93335 -4.88130 0.35577 0.46897 0.56738 1.24627 1.56871 1.70556 1.95695 2.11535 2.14416 2.26643 2.82954 3.09120 3.39323 3.50142 3.52391 3.68037 3.79691 3.84797 3.93098 3.98447 4.07267 4.14883 4.20219 4.22046 4.33958 4.38688 4.44755 4.48318 4.49740 4.56839 4.64315 4.64563 4.71231 4.72388 4.77913 4.82807 4.87081 4.93259 4.95667 4.98336 5.03186 5.08704 5.18867 5.22806 5.29679 5.30838 5.42844 5.63243 5.70686 5.73034 5.79174 5.86761 6.18224 6.38592 6.56360 6.74044 6.86308 7.08200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.100 3.900 3 C -0.194 4.194 4 C -0.032 4.032 5 O -0.556 6.556 6 Si 0.737 3.263 7 C -0.074 4.074 8 C -0.088 4.088 9 C -0.081 4.081 10 C 0.589 3.411 11 O -0.569 6.569 12 N -0.705 5.705 13 C 0.125 3.875 14 H 0.103 0.897 15 C -0.121 4.121 16 C -0.037 4.037 17 C 0.097 3.903 18 O -0.579 6.579 19 C -0.074 4.074 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.114 4.114 25 C -0.132 4.132 26 N -0.519 5.519 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.391 0.609 32 H -0.300 1.300 33 H -0.284 1.284 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.392 0.608 43 H 0.145 0.855 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.139 0.861 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.260 -3.843 3.857 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.020 4.020 3 C -0.200 4.200 4 C -0.143 4.143 5 O -0.366 6.366 6 Si 0.643 3.357 7 C -0.083 4.083 8 C -0.145 4.145 9 C -0.193 4.193 10 C 0.379 3.621 11 O -0.448 6.448 12 N -0.356 5.356 13 C 0.020 3.980 14 H 0.121 0.879 15 C -0.158 4.158 16 C -0.038 4.038 17 C 0.020 3.980 18 O -0.388 6.388 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.131 4.131 25 C -0.170 4.170 26 N -0.117 5.117 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.240 0.760 32 H -0.228 1.228 33 H -0.210 1.210 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.243 0.757 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.156 0.844 48 H 0.105 0.895 49 H 0.079 0.921 50 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -7.330 -3.663 3.884 9.069 hybrid contribution 0.789 0.270 -1.018 1.316 sum -6.541 -3.393 2.866 7.907 Atomic orbital electron populations 1.20699 0.84192 1.05918 1.04534 1.20705 0.95009 0.84512 1.01782 1.18578 0.91785 0.94021 1.15598 1.24010 1.00406 0.91637 0.98209 1.86599 1.73320 1.28258 1.48401 0.94455 0.80026 0.79300 0.81934 1.19859 0.95393 0.91661 1.01345 1.20319 0.94855 0.98205 1.01143 1.19835 0.83923 0.93459 1.22065 1.17226 0.87170 0.82258 0.75488 1.90808 1.25905 1.75869 1.52223 1.45664 1.10330 1.04600 1.74965 1.22504 0.89451 0.89053 0.97007 0.87880 1.23518 1.01714 0.91997 0.98602 1.20514 0.94424 0.91586 0.97243 1.21950 0.89249 0.97947 0.88896 1.86428 1.25001 1.86591 1.40766 1.19574 0.95339 0.95806 0.96676 1.21400 0.96080 0.96344 1.00653 1.21409 1.00644 0.96071 0.96965 1.21446 0.95644 1.00595 0.97691 1.21444 0.97088 0.96752 1.00737 1.21636 1.00072 0.95217 0.96194 1.23486 1.01951 0.94608 0.96994 1.41700 1.03946 1.09313 1.56771 0.89589 0.88867 0.87619 0.88204 0.75975 1.22768 1.21036 0.92520 0.92138 0.91716 0.75303 0.88666 0.86548 0.92539 0.92153 0.75703 0.83766 0.84410 0.85152 0.85731 0.84354 0.89501 0.92147 0.72573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.03 9.89 71.24 0.70 1.74 16 2 C 0.10 -0.26 7.13 41.35 0.29 0.04 16 3 C -0.19 -0.71 4.49 -20.12 -0.09 -0.80 16 4 C -0.03 -0.02 2.76 71.24 0.20 0.18 16 5 O -0.56 -2.27 11.55 -148.98 -1.72 -3.99 16 6 Si 0.74 0.72 31.74 68.60 2.18 2.89 16 7 C -0.07 -0.70 5.87 -19.56 -0.11 -0.81 16 8 C -0.09 -1.16 8.19 71.24 0.58 -0.57 16 9 C -0.08 -0.46 7.06 40.35 0.28 -0.18 16 10 C 0.59 4.51 7.79 86.45 0.67 5.18 16 11 O -0.57 -9.22 14.40 -4.33 -0.06 -9.28 16 12 N -0.70 0.53 5.35 -444.00 -2.38 -1.85 16 13 C 0.12 -0.04 3.89 45.52 0.18 0.14 16 14 H 0.10 0.38 6.98 -2.39 -0.02 0.37 16 15 C -0.12 0.63 6.44 31.12 0.20 0.83 16 16 C -0.04 0.03 1.06 -52.41 -0.06 -0.03 16 17 C 0.10 -0.12 6.38 71.98 0.46 0.34 16 18 O -0.58 -0.13 10.04 -148.98 -1.50 -1.63 16 19 C -0.07 -0.16 5.03 -19.87 -0.10 -0.26 16 20 C -0.13 0.03 9.20 22.27 0.20 0.23 16 21 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 22 C -0.14 -0.35 10.05 22.27 0.22 -0.12 16 23 C -0.14 -0.62 10.05 22.27 0.22 -0.40 16 24 C -0.11 -0.59 8.84 22.27 0.20 -0.39 16 25 C -0.13 -0.18 6.99 31.12 0.22 0.03 16 26 N -0.52 1.63 5.99 -171.92 -1.03 0.60 16 27 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.09 -1.35 8.14 -2.38 -0.02 -1.37 16 29 H 0.11 -1.41 7.44 -2.39 -0.02 -1.43 16 30 H 0.10 -0.60 6.78 -2.39 -0.02 -0.61 16 31 H 0.39 -1.61 8.74 -74.05 -0.65 -2.25 16 32 H -0.30 -3.05 6.04 99.48 0.60 -2.45 16 33 H -0.28 -1.16 7.11 99.48 0.71 -0.45 16 34 H 0.06 0.78 7.50 -2.39 -0.02 0.76 16 35 H 0.06 1.00 6.48 -2.39 -0.02 0.98 16 36 H 0.06 0.86 6.67 -2.39 -0.02 0.84 16 37 H 0.41 -3.21 7.86 -92.71 -0.73 -3.94 16 38 H 0.09 -0.65 8.10 -2.39 -0.02 -0.67 16 39 H 0.12 -1.05 5.93 -2.39 -0.01 -1.06 16 40 H 0.06 -0.10 7.35 -2.39 -0.02 -0.12 16 41 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.39 -2.84 9.12 -74.06 -0.68 -3.52 16 43 H 0.14 -0.83 5.76 -2.91 -0.02 -0.85 16 44 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 45 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 46 H 0.12 0.25 8.06 -2.91 -0.02 0.23 16 47 H 0.14 0.87 5.43 -2.91 -0.02 0.85 16 48 H 0.09 0.13 8.09 -2.39 -0.02 0.11 16 49 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 50 H 0.43 -4.75 8.19 -92.71 -0.76 -5.51 16 Total: 0.00 -27.68 396.50 -1.86 -29.54 By element: Atomic # 1 Polarization: -19.73 SS G_CDS: -1.85 Total: -21.58 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 4.50 Total: 5.29 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -3.41 Total: -1.24 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -3.28 Total: -14.90 kcal Atomic # 14 Polarization: 0.72 SS G_CDS: 2.18 Total: 2.89 kcal Total: -27.68 -1.86 -29.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_12297754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.347 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds