Wall clock time and date at job start Sat Mar 6 2021 21:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86296 * 109.46993 * 2 1 4 4 C 1.50693 * 109.47290 * 120.00246 * 2 1 3 5 5 C 1.38233 * 120.00207 * 64.99292 * 4 2 1 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 2 7 7 C 1.38235 * 120.00220 * 0.28719 * 6 5 4 8 8 C 1.50700 * 120.00255 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47288 * 89.99435 * 8 7 6 10 10 O 1.21279 * 119.99935 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99582 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99337 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.85065 * 23.80727 * 12 11 9 14 14 C 1.53787 * 113.60805 * 155.00283 * 12 11 9 15 15 C 1.53784 * 87.07706 * 139.98285 * 14 12 11 16 16 C 1.52996 * 113.61786 * 89.19942 * 15 14 12 17 17 O 1.42901 * 109.47296 * 179.97438 * 16 15 14 18 18 C 1.50708 * 113.60977 * 220.01904 * 15 14 12 19 19 C 1.38235 * 120.00164 * 359.72658 * 18 15 14 20 20 C 1.38229 * 119.99903 * 179.74751 * 19 18 15 21 21 C 1.38235 * 120.00250 * 0.54714 * 20 19 18 22 22 C 1.38246 * 119.99799 * 359.70401 * 21 20 19 23 23 C 1.38236 * 119.99470 * 180.02562 * 18 15 14 24 24 C 1.53778 * 113.61209 * 252.49848 * 12 11 9 25 25 C 1.38237 * 119.99712 * 359.94731 * 7 6 5 26 26 C 1.38234 * 120.00048 * 0.02876 * 25 7 6 27 27 H 0.96705 * 113.99376 * 300.00310 * 1 2 3 28 28 H 1.09002 * 109.46817 * 240.00358 * 2 1 3 29 29 H 1.48500 * 110.00245 * 299.99940 * 3 2 1 30 30 H 1.48496 * 110.00414 * 61.32391 * 3 2 1 31 31 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.00009 * 180.25939 * 6 5 4 33 33 H 1.09005 * 109.47111 * 209.99797 * 8 7 6 34 34 H 1.09002 * 109.46493 * 329.99148 * 8 7 6 35 35 H 0.96996 * 120.00088 * 0.02562 * 11 9 8 36 36 H 1.08995 * 113.61313 * 254.52724 * 14 12 11 37 37 H 1.08997 * 113.61477 * 25.43228 * 14 12 11 38 38 H 1.08995 * 109.47049 * 299.99807 * 16 15 14 39 39 H 1.09007 * 109.47035 * 59.99609 * 16 15 14 40 40 H 0.96693 * 113.99840 * 179.97438 * 17 16 15 41 41 H 1.08000 * 119.99855 * 0.02562 * 19 18 15 42 42 H 1.08000 * 120.00052 * 180.27033 * 20 19 18 43 43 H 1.07998 * 120.00583 * 179.72742 * 21 20 19 44 44 H 1.07998 * 120.00143 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.00321 * 359.97438 * 23 18 15 46 46 H 1.09001 * 113.61919 * 334.57033 * 24 12 11 47 47 H 1.09000 * 113.61373 * 105.47481 * 24 12 11 48 48 H 1.08001 * 119.99657 * 180.02562 * 25 7 6 49 49 H 1.08004 * 119.99526 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6847 -2.0602 1.3983 6 6 2.1505 -2.7130 2.5242 7 6 2.8578 -2.0150 3.4851 8 6 3.3650 -2.7266 4.7128 9 6 4.7476 -3.2640 4.4467 10 8 5.2698 -3.0862 3.3667 11 7 5.4041 -3.9413 5.4095 12 6 6.7479 -4.4643 5.1506 13 1 7.2668 -3.9244 4.3585 14 6 7.5912 -4.6523 6.4227 15 6 8.1022 -5.9603 5.7958 16 6 9.3523 -5.7788 4.9325 17 8 9.7491 -7.0429 4.3971 18 6 8.2316 -7.0923 6.7823 19 6 7.9070 -6.8918 8.1109 20 6 8.0206 -7.9315 9.0147 21 6 8.4696 -9.1687 8.5921 22 6 8.7991 -9.3679 7.2643 23 6 8.6806 -8.3295 6.3595 24 6 6.7934 -5.9928 4.9890 25 6 3.1003 -0.6641 3.3194 26 6 2.6350 -0.0114 2.1933 27 1 -0.3932 0.4418 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5615 2.4679 -1.2085 30 1 1.5880 2.4585 1.2242 31 1 1.1323 -2.6057 0.6476 32 1 1.9613 -3.7685 2.6534 33 1 3.4014 -2.0279 5.5488 34 1 2.6954 -3.5512 4.9574 35 1 4.9865 -4.0832 6.2734 36 1 8.3664 -3.8965 6.5484 37 1 6.9957 -4.8032 7.3231 38 1 9.1332 -5.0907 4.1161 39 1 10.1595 -5.3734 5.5427 40 1 10.5369 -7.0033 3.8378 41 1 7.5604 -5.9240 8.4420 42 1 7.7629 -7.7761 10.0519 43 1 8.5626 -9.9799 9.2990 44 1 9.1503 -10.3343 6.9342 45 1 8.9384 -8.4849 5.3223 46 1 5.9798 -6.5102 5.4974 47 1 6.9245 -6.3191 3.9572 48 1 3.6533 -0.1188 4.0700 49 1 2.8241 1.0441 2.0642 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13270510_12335836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:31:57 Heat of formation + Delta-G solvation = -30.986338 kcal Electronic energy + Delta-G solvation = -30232.985589 eV Core-core repulsion = 26092.325117 eV Total energy + Delta-G solvation = -4140.660472 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92299 -40.92742 -39.97292 -38.87855 -37.70186 -37.27907 -34.71172 -33.99597 -31.90802 -31.74001 -31.67381 -29.82385 -28.20830 -27.01081 -25.87636 -24.61109 -23.78588 -23.22013 -22.70463 -21.89688 -21.34583 -19.75489 -18.70614 -18.48867 -18.06873 -17.86890 -17.19009 -16.90735 -16.69749 -16.28607 -16.18465 -16.08221 -15.87665 -15.76239 -15.46059 -15.41218 -14.90258 -14.74396 -14.49074 -14.42395 -14.13408 -13.90062 -13.64498 -13.50133 -13.38167 -13.32496 -13.21126 -12.91522 -12.87667 -12.40888 -12.28005 -12.22018 -11.95536 -11.82623 -11.55699 -11.52864 -11.39938 -10.86645 -10.82623 -10.53076 -10.06481 -9.82210 -9.69541 -9.59605 -9.47314 -4.90992 0.27819 0.50868 0.52546 0.63701 1.33095 1.62285 1.64034 1.98826 2.12604 2.80172 2.82084 3.05387 3.37195 3.42345 3.46297 3.58491 3.65783 3.77681 3.82584 3.86268 3.89232 3.98462 4.05678 4.14226 4.21944 4.24285 4.34007 4.36947 4.38914 4.43886 4.49985 4.51275 4.60104 4.61580 4.69019 4.72386 4.73429 4.87751 4.94143 4.99080 5.01923 5.09139 5.10937 5.21114 5.34722 5.41463 5.48194 5.58603 5.62009 5.68210 5.79987 5.84953 6.03917 6.22801 6.44307 6.45626 6.61811 7.22810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.075 4.075 3 Si 0.686 3.314 4 C -0.117 4.117 5 C -0.090 4.090 6 C -0.104 4.104 7 C -0.062 4.062 8 C -0.105 4.105 9 C 0.516 3.484 10 O -0.526 6.526 11 N -0.723 5.723 12 C 0.123 3.877 13 H 0.117 0.883 14 C -0.137 4.137 15 C -0.039 4.039 16 C 0.100 3.900 17 O -0.563 6.563 18 C -0.068 4.068 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.132 4.132 25 C -0.100 4.100 26 C -0.117 4.117 27 H 0.375 0.625 28 H 0.118 0.882 29 H -0.258 1.258 30 H -0.261 1.261 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.402 0.598 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.379 0.621 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.147 0.853 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.124 0.876 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 0.312 4.367 4.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.185 4.185 3 Si 0.588 3.412 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.063 4.063 8 C -0.145 4.145 9 C 0.302 3.698 10 O -0.401 6.401 11 N -0.374 5.374 12 C 0.018 3.982 13 H 0.135 0.865 14 C -0.175 4.175 15 C -0.039 4.039 16 C 0.023 3.977 17 O -0.370 6.370 18 C -0.068 4.068 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.171 4.171 25 C -0.118 4.118 26 C -0.134 4.134 27 H 0.223 0.777 28 H 0.135 0.865 29 H -0.183 1.183 30 H -0.186 1.186 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.236 0.764 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.227 0.773 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.164 0.836 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.142 0.858 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.949 0.795 3.344 3.951 hybrid contribution -0.699 -0.213 0.877 1.142 sum 1.250 0.582 4.221 4.441 Atomic orbital electron populations 1.86605 1.17757 1.79992 1.49259 1.25028 0.83889 1.11034 0.98586 0.94847 0.91797 0.74521 0.80028 1.20247 0.99860 0.94990 0.96592 1.20966 0.98670 0.93752 0.97453 1.21018 0.97782 0.99610 0.93763 1.19271 0.97930 0.93741 0.95350 1.20708 0.94220 1.01661 0.97865 1.20595 0.87390 0.77554 0.84282 1.90753 1.68424 1.57014 1.23901 1.45990 1.17543 1.57119 1.16782 1.22532 0.82960 0.94169 0.98500 0.86518 1.23547 0.99685 0.96416 0.97860 1.20516 0.94638 0.93752 0.95028 1.21890 0.94637 0.85609 0.95613 1.86462 1.50515 1.30322 1.69653 1.19403 0.99905 0.94299 0.93163 1.21116 1.01012 0.99071 0.92938 1.21097 1.00444 0.93356 0.99472 1.21203 0.99426 0.97317 0.96165 1.21263 1.00455 0.99234 0.93547 1.21552 0.96784 0.91872 1.01142 1.23523 0.96340 0.96025 1.01183 1.20899 0.99196 0.93909 0.97803 1.20987 0.98695 0.99538 0.94207 0.77742 0.86454 1.18265 1.18566 0.85664 0.86006 0.87691 0.87734 0.76393 0.90025 0.88296 0.92762 0.92979 0.77309 0.86083 0.86273 0.86353 0.86254 0.83560 0.89349 0.90290 0.85833 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.08 12.83 -35.23 -0.45 -1.53 16 2 C -0.08 -0.06 2.80 36.00 0.10 0.04 16 3 Si 0.69 -0.03 29.89 -169.99 -5.08 -5.11 16 4 C -0.12 -0.17 5.35 -104.63 -0.56 -0.73 16 5 C -0.09 -0.16 9.69 -39.58 -0.38 -0.55 16 6 C -0.10 -0.14 9.70 -39.58 -0.38 -0.53 16 7 C -0.06 -0.05 4.37 -104.62 -0.46 -0.51 16 8 C -0.10 0.19 5.83 -29.04 -0.17 0.02 16 9 C 0.52 0.27 7.82 -10.98 -0.09 0.19 16 10 O -0.53 -2.59 15.63 5.56 0.09 -2.51 16 11 N -0.72 1.34 5.35 -53.01 -0.28 1.06 16 12 C 0.12 -0.14 3.89 -67.11 -0.26 -0.40 16 13 H 0.12 0.06 6.98 -51.93 -0.36 -0.31 16 14 C -0.14 0.33 6.44 -25.91 -0.17 0.16 16 15 C -0.04 0.03 1.06 -154.84 -0.16 -0.13 16 16 C 0.10 -0.12 6.38 37.16 0.24 0.12 16 17 O -0.56 0.43 10.04 -35.23 -0.35 0.07 16 18 C -0.07 -0.06 5.04 -104.62 -0.53 -0.59 16 19 C -0.12 -0.06 9.20 -39.59 -0.36 -0.42 16 20 C -0.13 -0.10 10.05 -39.59 -0.40 -0.50 16 21 C -0.12 -0.16 10.05 -39.58 -0.40 -0.55 16 22 C -0.13 -0.21 10.05 -39.58 -0.40 -0.61 16 23 C -0.10 -0.18 8.84 -39.58 -0.35 -0.53 16 24 C -0.13 0.05 6.99 -25.92 -0.18 -0.14 16 25 C -0.10 -0.08 9.70 -39.58 -0.38 -0.47 16 26 C -0.12 -0.11 8.67 -39.58 -0.34 -0.45 16 27 H 0.38 -0.33 8.70 45.56 0.40 0.07 16 28 H 0.12 0.04 7.96 -51.93 -0.41 -0.37 16 29 H -0.26 -0.80 7.11 56.52 0.40 -0.40 16 30 H -0.26 -0.41 7.00 56.52 0.40 -0.01 16 31 H 0.13 0.15 8.06 -52.49 -0.42 -0.27 16 32 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 33 H 0.10 -0.42 8.09 -51.93 -0.42 -0.84 16 34 H 0.10 -0.38 8.09 -51.93 -0.42 -0.80 16 35 H 0.40 -1.82 8.73 -40.82 -0.36 -2.18 16 36 H 0.08 -0.23 8.10 -51.93 -0.42 -0.65 16 37 H 0.10 -0.34 5.93 -51.93 -0.31 -0.64 16 38 H 0.05 -0.10 7.35 -51.93 -0.38 -0.48 16 39 H 0.05 -0.09 8.14 -51.92 -0.42 -0.51 16 40 H 0.38 -1.69 9.12 45.56 0.42 -1.27 16 41 H 0.12 -0.19 5.76 -52.49 -0.30 -0.50 16 42 H 0.12 -0.10 8.06 -52.49 -0.42 -0.53 16 43 H 0.12 -0.03 8.06 -52.49 -0.42 -0.46 16 44 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 45 H 0.15 0.29 5.43 -52.49 -0.29 0.01 16 46 H 0.09 -0.01 8.09 -51.93 -0.42 -0.43 16 47 H 0.08 0.08 8.10 -51.93 -0.42 -0.34 16 48 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 49 H 0.13 -0.09 4.84 -52.48 -0.25 -0.34 16 LS Contribution 397.53 15.07 5.99 5.99 Total: 0.00 -9.37 397.53 -11.85 -21.22 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: -6.12 Total: -12.62 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -5.64 Total: -6.57 kcal Atomic # 7 Polarization: 1.34 SS G_CDS: -0.28 Total: 1.06 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.72 Total: -3.97 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: -5.08 Total: -5.11 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -9.37 -11.85 -21.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_12335836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.771 kcal (2) G-P(sol) polarization free energy of solvation -9.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds