Wall clock time and date at job start Sat Mar 6 2021 21:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47071 * 2 1 4 4 C 1.50702 * 109.47538 * 120.00278 * 2 1 3 5 5 C 1.38183 * 119.83844 * 14.99896 * 4 2 1 6 6 C 1.38322 * 120.14066 * 180.02562 * 5 4 2 7 7 F 1.35103 * 120.08283 * 180.02562 * 6 5 4 8 8 C 1.39802 * 119.83038 * 359.97438 * 6 5 4 9 9 C 1.47700 * 120.15305 * 180.02562 * 8 6 5 10 10 O 1.21573 * 119.99979 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99974 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99730 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85119 * 23.80344 * 12 11 9 14 14 C 1.53778 * 113.61201 * 154.99771 * 12 11 9 15 15 C 1.53779 * 87.08215 * 140.06465 * 14 12 11 16 16 C 1.53001 * 113.61684 * 89.19966 * 15 14 12 17 17 O 1.42899 * 109.46923 * 181.52907 * 16 15 14 18 18 C 1.50706 * 113.61272 * 220.02115 * 15 14 12 19 19 C 1.38235 * 119.99795 * 125.70658 * 18 15 14 20 20 C 1.38235 * 119.99431 * 179.97438 * 19 18 15 21 21 C 1.38236 * 120.00586 * 359.95531 * 20 19 18 22 22 C 1.38244 * 119.99508 * 0.27564 * 21 20 19 23 23 C 1.38233 * 119.99840 * 359.51050 * 22 21 20 24 24 C 1.53782 * 113.68666 * 252.52979 * 12 11 9 25 25 C 1.39653 * 119.69283 * 0.28081 * 8 6 5 26 26 C 1.38070 * 119.85169 * 359.44288 * 25 8 6 27 27 F 1.35093 * 119.91965 * 180.25771 * 26 25 8 28 28 H 0.96696 * 114.00719 * 60.00130 * 1 2 3 29 29 H 1.09002 * 109.46837 * 240.00377 * 2 1 3 30 30 H 1.48505 * 109.99681 * 60.00254 * 3 2 1 31 31 H 1.48499 * 110.00452 * 181.32316 * 3 2 1 32 32 H 1.07995 * 119.93476 * 0.04514 * 5 4 2 33 33 H 0.96999 * 120.00145 * 359.97438 * 11 9 8 34 34 H 1.09000 * 113.61667 * 25.51501 * 14 12 11 35 35 H 1.09006 * 113.61380 * 254.61306 * 14 12 11 36 36 H 1.09004 * 109.46780 * 301.52728 * 16 15 14 37 37 H 1.09000 * 109.46861 * 61.52885 * 16 15 14 38 38 H 0.96698 * 113.99551 * 179.97438 * 17 16 15 39 39 H 1.07994 * 120.00597 * 359.97438 * 19 18 15 40 40 H 1.08003 * 119.99622 * 179.97438 * 20 19 18 41 41 H 1.08002 * 120.00432 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.99251 * 179.72460 * 22 21 20 43 43 H 1.08003 * 119.99694 * 180.25035 * 23 22 21 44 44 H 1.08997 * 113.61322 * 105.46517 * 24 12 11 45 45 H 1.08996 * 113.61708 * 334.55373 * 24 12 11 46 46 H 1.08005 * 120.07575 * 179.72425 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.0691 -1.4963 1.9709 6 6 1.5235 -2.1507 3.1016 7 9 0.6795 -2.9191 3.8245 8 6 2.8585 -2.0159 3.4939 9 6 3.3514 -2.7120 4.6997 10 8 2.5957 -3.4045 5.3534 11 7 4.6390 -2.5794 5.0753 12 6 5.1280 -3.2704 6.2711 13 1 4.5317 -4.1460 6.5276 14 6 6.6417 -3.5403 6.2507 15 6 6.6478 -3.1731 7.7440 16 6 6.3961 -4.3653 8.6694 17 8 6.3851 -3.9202 10.0272 18 6 7.8415 -2.3520 8.1588 19 6 7.6585 -1.1449 8.8071 20 6 8.7534 -0.3921 9.1881 21 6 10.0314 -0.8467 8.9216 22 6 10.2143 -2.0516 8.2690 23 6 9.1194 -2.8065 7.8920 24 6 5.3907 -2.3335 7.4619 25 6 3.7226 -1.2157 2.7433 26 6 3.2568 -0.5728 1.6137 27 9 4.0928 0.1974 0.8837 28 1 -0.3934 0.4416 -0.7650 29 1 1.7922 -0.5138 -0.8900 30 1 1.5614 2.4678 1.2086 31 1 3.5345 1.7704 -0.0322 32 1 0.0382 -1.5999 1.6661 33 1 5.2420 -2.0272 4.5536 34 1 7.2013 -2.8430 5.6273 35 1 6.8969 -4.5821 6.0562 36 1 5.4339 -4.8164 8.4271 37 1 7.1874 -5.1028 8.5351 38 1 6.2299 -4.6250 10.6708 39 1 6.6601 -0.7900 9.0160 40 1 8.6104 0.5512 9.6942 41 1 10.8869 -0.2587 9.2197 42 1 11.2127 -2.4046 8.0569 43 1 9.2624 -3.7498 7.3858 44 1 4.6358 -2.4009 8.2453 45 1 5.6083 -1.3062 7.1697 46 1 4.7541 -1.1036 3.0433 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_12360598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:32:38 Heat of formation + Delta-G solvation = -105.968327 kcal Electronic energy + Delta-G solvation = -33876.012415 eV Core-core repulsion = 28948.730147 eV Total energy + Delta-G solvation = -4927.282267 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.132 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -50.61516 -50.20411 -42.01891 -41.02397 -39.87451 -38.97717 -37.64594 -37.22045 -35.10720 -33.28902 -31.83985 -31.69034 -31.52199 -28.60049 -27.70976 -26.99601 -24.98924 -24.35778 -23.82234 -23.18771 -22.46664 -21.86112 -20.15219 -19.51622 -19.00215 -18.60162 -18.44608 -18.04131 -17.96321 -17.67006 -17.22182 -17.02746 -16.87333 -16.25708 -16.14456 -16.06668 -15.91012 -15.83772 -15.67568 -15.65850 -15.42268 -15.29310 -14.76961 -14.38222 -14.29371 -14.20055 -13.77584 -13.72506 -13.50358 -13.40120 -13.22210 -13.09991 -13.06352 -12.57936 -12.48768 -12.29435 -12.12634 -11.75215 -11.55522 -11.39018 -11.27901 -11.06547 -10.85249 -10.29230 -10.22563 -9.80593 -9.76603 -9.59122 -4.95130 -0.88791 -0.40942 0.46515 0.51364 1.10315 1.43250 1.66163 1.78609 1.96705 2.17032 2.62539 2.73715 2.87111 2.91616 3.00278 3.10917 3.24378 3.39471 3.58846 3.60710 3.64223 3.83180 3.86405 3.99745 4.09958 4.15478 4.15895 4.23934 4.28701 4.35692 4.39275 4.45800 4.49790 4.54004 4.60419 4.62258 4.65559 4.72920 4.74234 4.74686 4.91890 4.93437 4.98964 5.14667 5.16390 5.28640 5.35777 5.59790 5.64292 5.70821 6.12545 6.23069 6.81086 6.84704 6.90162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.080 4.080 3 Si 0.772 3.228 4 C -0.061 4.061 5 C -0.114 4.114 6 C 0.138 3.862 7 F -0.125 7.125 8 C -0.162 4.162 9 C 0.561 3.439 10 O -0.561 6.561 11 N -0.696 5.696 12 C 0.121 3.879 13 H 0.106 0.894 14 C -0.113 4.113 15 C -0.039 4.039 16 C 0.098 3.902 17 O -0.586 6.586 18 C -0.056 4.056 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.137 4.137 25 C -0.069 4.069 26 C 0.057 3.943 27 F -0.114 7.114 28 H 0.412 0.588 29 H 0.119 0.881 30 H -0.313 1.313 31 H -0.255 1.255 32 H 0.168 0.832 33 H 0.416 0.584 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.395 0.605 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 1.585 -6.802 7.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.189 4.189 3 Si 0.676 3.324 4 C -0.062 4.062 5 C -0.132 4.132 6 C 0.117 3.883 7 F -0.104 7.104 8 C -0.166 4.166 9 C 0.348 3.652 10 O -0.440 6.440 11 N -0.347 5.347 12 C 0.016 3.984 13 H 0.124 0.876 14 C -0.151 4.151 15 C -0.039 4.039 16 C 0.020 3.980 17 O -0.394 6.394 18 C -0.056 4.056 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.140 4.140 24 C -0.176 4.176 25 C -0.088 4.088 26 C 0.038 3.962 27 F -0.093 7.093 28 H 0.265 0.735 29 H 0.136 0.864 30 H -0.242 1.242 31 H -0.181 1.181 32 H 0.186 0.814 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.245 0.755 39 H 0.134 0.866 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.021 1.920 -5.666 7.208 hybrid contribution -0.147 -0.795 0.786 1.128 sum 3.874 1.125 -4.880 6.331 Atomic orbital electron populations 1.86338 1.16148 1.82577 1.51994 1.24800 0.87023 1.10812 0.96222 0.94875 0.78051 0.73103 0.86367 1.19826 0.91560 0.96528 0.98282 1.20876 1.02770 0.96696 0.92900 1.18021 0.87113 0.92012 0.91161 1.91589 1.69891 1.72403 1.76475 1.19826 0.93382 1.04259 0.99124 1.18044 0.82984 0.80497 0.83685 1.90859 1.56643 1.40912 1.55623 1.45728 1.09692 1.50456 1.28859 1.22598 0.95515 0.96140 0.84146 0.87598 1.23406 0.93546 1.04520 0.93597 1.20533 0.93042 0.95366 0.94988 1.21992 1.00575 0.93816 0.81602 1.86470 1.95847 1.40468 1.16636 1.19459 0.93779 0.94368 0.98007 1.21095 0.98875 0.95186 0.98643 1.21367 0.92973 1.00430 1.00303 1.21412 0.97488 0.97120 0.99410 1.21411 0.99644 0.95011 0.98493 1.21164 0.91717 1.00374 1.00761 1.23540 0.96812 0.99453 0.97746 1.21291 1.01658 0.93847 0.91967 1.17304 0.87934 0.97458 0.93503 1.91525 1.70612 1.71436 1.75703 0.73480 0.86360 1.24168 1.18072 0.81425 0.74562 0.87240 0.88330 0.92503 0.91777 0.75540 0.86628 0.85411 0.84970 0.84562 0.84688 0.91894 0.88864 0.79865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.60 11.47 -148.98 -1.71 0.89 16 2 C -0.08 0.33 2.95 71.24 0.21 0.54 16 3 Si 0.77 -3.10 30.73 68.60 2.11 -0.99 16 4 C -0.06 -0.08 5.16 -19.78 -0.10 -0.19 16 5 C -0.11 -0.45 9.33 22.28 0.21 -0.24 16 6 C 0.14 1.05 7.28 22.67 0.17 1.22 16 7 F -0.13 -1.67 15.55 44.97 0.70 -0.97 16 8 C -0.16 -0.72 5.88 -20.06 -0.12 -0.84 16 9 C 0.56 3.85 7.77 86.74 0.67 4.52 16 10 O -0.56 -8.88 14.94 -3.95 -0.06 -8.94 16 11 N -0.70 0.53 5.31 -443.04 -2.35 -1.82 16 12 C 0.12 -0.06 3.89 45.52 0.18 0.12 16 13 H 0.11 0.33 6.96 -2.39 -0.02 0.31 16 14 C -0.11 0.58 6.63 31.12 0.21 0.78 16 15 C -0.04 0.04 0.88 -52.40 -0.05 -0.01 16 16 C 0.10 -0.11 6.37 71.98 0.46 0.35 16 17 O -0.59 -1.30 13.17 -148.98 -1.96 -3.26 16 18 C -0.06 -0.11 4.36 -19.86 -0.09 -0.20 16 19 C -0.12 -0.52 9.02 22.27 0.20 -0.31 16 20 C -0.13 -0.48 10.05 22.27 0.22 -0.26 16 21 C -0.14 -0.32 10.05 22.27 0.22 -0.10 16 22 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 23 C -0.12 -0.09 9.39 22.27 0.21 0.12 16 24 C -0.14 -0.11 5.99 31.12 0.19 0.07 16 25 C -0.07 0.09 9.51 22.57 0.21 0.31 16 26 C 0.06 0.04 6.65 22.33 0.15 0.19 16 27 F -0.11 -0.11 12.84 44.97 0.58 0.47 16 28 H 0.41 -6.16 8.74 -74.06 -0.65 -6.80 16 29 H 0.12 -1.05 7.96 -2.39 -0.02 -1.07 16 30 H -0.31 -1.77 7.11 99.48 0.71 -1.06 16 31 H -0.25 -0.10 5.39 99.48 0.54 0.44 16 32 H 0.17 0.48 7.12 -2.91 -0.02 0.46 16 33 H 0.42 -3.03 6.76 -92.71 -0.63 -3.65 16 34 H 0.11 -0.80 8.07 -2.39 -0.02 -0.82 16 35 H 0.10 -0.73 8.10 -2.38 -0.02 -0.75 16 36 H 0.06 -0.11 7.34 -2.39 -0.02 -0.13 16 37 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.40 -2.20 9.12 -74.06 -0.68 -2.88 16 39 H 0.12 0.49 7.01 -2.91 -0.02 0.47 16 40 H 0.13 0.12 8.06 -2.91 -0.02 0.09 16 41 H 0.13 -0.13 8.06 -2.91 -0.02 -0.16 16 42 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 43 H 0.14 -0.44 8.03 -2.91 -0.02 -0.47 16 44 H 0.06 0.29 8.10 -2.39 -0.02 0.28 16 45 H 0.09 0.02 7.43 -2.39 -0.02 0.01 16 46 H 0.18 -1.62 6.41 -2.91 -0.02 -1.64 16 Total: 0.00 -26.18 387.17 -0.33 -26.51 By element: Atomic # 1 Polarization: -17.02 SS G_CDS: -1.01 Total: -18.02 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 3.38 Total: 6.13 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -2.35 Total: -1.82 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -3.73 Total: -11.31 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 1.28 Total: -0.50 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.11 Total: -0.99 kcal Total: -26.18 -0.33 -26.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_12360598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.461 kcal (2) G-P(sol) polarization free energy of solvation -26.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds