Wall clock time and date at job start Sat Mar 6 2021 21:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86305 * 109.47051 * 2 1 4 4 C 1.50702 * 109.47323 * 119.99725 * 2 1 3 5 5 C 1.34186 * 126.54257 * 255.00162 * 4 2 1 6 6 N 1.36872 * 109.96749 * 180.02562 * 5 4 2 7 7 C 1.37396 * 109.97926 * 359.97438 * 6 5 4 8 8 C 1.39334 * 133.25021 * 180.02562 * 7 6 5 9 9 C 1.36359 * 120.23594 * 180.02562 * 8 7 6 10 10 C 1.40172 * 120.66682 * 359.97205 * 9 8 7 11 11 C 1.47651 * 119.96772 * 180.02562 * 10 9 8 12 12 O 1.21579 * 119.99905 * 180.02562 * 11 10 9 13 13 N 1.34774 * 120.00315 * 0.02562 * 11 10 9 14 14 C 1.46505 * 119.99910 * 179.97438 * 13 11 10 15 15 H 1.08992 * 112.85024 * 23.81048 * 14 13 11 16 16 C 1.53782 * 113.61095 * 155.00280 * 14 13 11 17 17 C 1.53779 * 87.08094 * 139.98238 * 16 14 13 18 18 C 1.53005 * 113.61466 * 89.11356 * 17 16 14 19 19 O 1.42901 * 109.47123 * 179.97438 * 18 17 16 20 20 C 1.50706 * 113.61698 * 219.93540 * 17 16 14 21 21 C 1.38235 * 119.99660 * 359.72619 * 20 17 16 22 22 C 1.38236 * 119.99605 * 179.79261 * 21 20 17 23 23 C 1.38233 * 120.00087 * 0.45977 * 22 21 20 24 24 C 1.38239 * 119.99848 * 359.76980 * 23 22 21 25 25 C 1.38230 * 119.99993 * 179.97438 * 20 17 16 26 26 C 1.53776 * 87.08165 * 334.56736 * 17 16 14 27 27 C 1.39185 * 120.05635 * 0.24411 * 10 9 8 28 28 C 1.39235 * 119.39332 * 359.54661 * 27 10 9 29 29 H 0.96692 * 114.00149 * 59.99738 * 1 2 3 30 30 H 1.08999 * 109.47164 * 239.99932 * 2 1 3 31 31 H 1.48492 * 110.00021 * 60.00327 * 3 2 1 32 32 H 1.48506 * 109.99915 * 181.32235 * 3 2 1 33 33 H 1.08002 * 125.01877 * 359.97438 * 5 4 2 34 34 H 0.96992 * 125.00816 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.88304 * 0.02562 * 8 7 6 36 36 H 1.07996 * 119.66209 * 180.02562 * 9 8 7 37 37 H 0.97001 * 120.00344 * 0.02562 * 13 11 10 38 38 H 1.09000 * 113.61737 * 254.52851 * 16 14 13 39 39 H 1.09000 * 113.61747 * 25.35459 * 16 14 13 40 40 H 1.08994 * 109.46948 * 300.00039 * 18 17 16 41 41 H 1.09003 * 109.46935 * 60.00279 * 18 17 16 42 42 H 0.96694 * 113.99554 * 179.97438 * 19 18 17 43 43 H 1.08002 * 120.00135 * 359.97438 * 21 20 17 44 44 H 1.08000 * 119.99699 * 180.25480 * 22 21 20 45 45 H 1.07998 * 120.00161 * 179.79606 * 23 22 21 46 46 H 1.08000 * 119.99491 * 180.02562 * 24 23 22 47 47 H 1.08000 * 120.00333 * 359.97438 * 25 20 17 48 48 H 1.09004 * 113.61767 * 270.88422 * 26 17 16 49 49 H 1.09002 * 113.61481 * 139.98005 * 26 17 16 50 50 H 1.08001 * 120.30365 * 179.70045 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.4608 -0.1386 2.3229 6 7 2.8033 -1.1005 3.2345 7 6 2.4957 -2.3454 2.7413 8 6 2.6345 -3.6350 3.2503 9 6 2.2309 -4.7104 2.5155 10 6 1.6717 -4.5368 1.2419 11 6 1.2394 -5.7122 0.4598 12 8 0.7548 -5.5623 -0.6451 13 7 1.3819 -6.9512 0.9707 14 6 0.9524 -8.1173 0.1948 15 1 0.9298 -7.9268 -0.8781 16 6 1.6861 -9.4143 0.5749 17 6 0.3337 -10.1306 0.4244 18 6 0.0627 -10.6368 -0.9938 19 8 -1.2102 -11.2850 -1.0330 20 6 0.0857 -11.1796 1.4777 21 6 1.0373 -11.4203 2.4509 22 6 0.8080 -12.3795 3.4196 23 6 -0.3689 -13.1046 3.4092 24 6 -1.3185 -12.8671 2.4331 25 6 -1.0912 -11.9046 1.4674 26 6 -0.3283 -8.7772 0.7324 27 6 1.5280 -3.2578 0.7121 28 6 1.9352 -2.1577 1.4621 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5615 2.4679 1.2085 32 1 3.5346 1.7703 -0.0322 33 1 2.5972 0.9237 2.4621 34 1 3.2042 -0.9285 4.1008 35 1 3.0632 -3.7833 4.2304 36 1 2.3423 -5.7058 2.9193 37 1 1.7682 -7.0708 1.8524 38 1 2.4295 -9.7264 -0.1586 39 1 2.0712 -9.4154 1.5946 40 1 0.0638 -9.7952 -1.6863 41 1 0.8397 -11.3452 -1.2814 42 1 -1.4485 -11.6314 -1.9038 43 1 1.9588 -10.8569 2.4563 44 1 1.5497 -12.5647 4.1824 45 1 -0.5467 -13.8563 4.1640 46 1 -2.2381 -13.4334 2.4253 47 1 -1.8332 -11.7190 0.7048 48 1 -0.4953 -8.6046 1.7956 49 1 -1.2113 -8.5750 0.1260 50 1 1.1022 -3.1198 -0.2708 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13270510_13287722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:33:30 Heat of formation + Delta-G solvation = 11.060909 kcal Electronic energy + Delta-G solvation = -33533.779937 eV Core-core repulsion = 29073.064578 eV Total energy + Delta-G solvation = -4460.715358 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.50073 -41.82278 -40.34836 -38.89571 -37.81643 -37.43256 -37.18559 -34.67878 -33.37679 -31.80302 -31.65583 -30.80805 -30.43712 -28.22704 -26.94304 -26.42940 -25.34317 -24.19765 -23.50315 -23.14762 -22.27020 -21.44968 -20.61333 -19.71256 -19.09526 -18.64075 -18.35178 -18.27471 -17.81649 -17.25203 -17.04941 -16.28642 -16.12032 -15.99825 -15.74335 -15.56155 -15.41921 -15.38871 -15.25854 -15.03930 -14.79209 -14.75596 -14.44350 -14.15911 -14.04171 -13.80545 -13.60077 -13.48095 -13.42898 -13.30165 -13.05773 -12.68385 -12.55037 -12.35589 -12.21779 -12.01726 -11.86066 -11.77159 -11.50346 -11.34537 -10.81207 -10.79775 -10.76390 -10.19269 -9.99502 -9.65496 -9.43681 -9.32933 -8.84640 -5.02476 -0.05598 0.17892 0.56781 0.67754 1.28592 1.41382 1.65413 1.92756 1.95247 1.99597 2.21495 2.85878 2.96255 3.10423 3.43540 3.50603 3.54065 3.58876 3.66793 3.74082 3.83535 3.88599 3.94516 3.99277 4.12286 4.18779 4.24746 4.25670 4.35514 4.39704 4.42308 4.47728 4.48315 4.56415 4.58024 4.67418 4.74502 4.77930 4.78730 4.92369 4.99940 5.01574 5.06423 5.14099 5.24366 5.26278 5.36468 5.39143 5.47460 5.58176 5.59449 5.72138 5.83923 5.89493 5.96416 6.26897 6.33320 6.57695 6.66565 6.74522 7.33754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.039 4.039 3 Si 0.687 3.313 4 C -0.144 4.144 5 C 0.056 3.944 6 N -0.584 5.584 7 C 0.120 3.880 8 C -0.133 4.133 9 C -0.065 4.065 10 C -0.169 4.169 11 C 0.567 3.433 12 O -0.538 6.538 13 N -0.718 5.718 14 C 0.124 3.876 15 H 0.118 0.882 16 C -0.137 4.137 17 C -0.039 4.039 18 C 0.100 3.900 19 O -0.563 6.563 20 C -0.067 4.067 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.096 4.096 26 C -0.132 4.132 27 C 0.010 3.990 28 C -0.102 4.102 29 H 0.380 0.620 30 H 0.072 0.928 31 H -0.253 1.253 32 H -0.256 1.256 33 H 0.170 0.830 34 H 0.422 0.578 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.400 0.600 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.378 0.622 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.147 0.853 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 1.525 0.423 3.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.150 4.150 3 Si 0.588 3.412 4 C -0.151 4.151 5 C -0.071 4.071 6 N -0.187 5.187 7 C 0.011 3.989 8 C -0.154 4.154 9 C -0.085 4.085 10 C -0.174 4.174 11 C 0.356 3.644 12 O -0.415 6.415 13 N -0.369 5.369 14 C 0.019 3.981 15 H 0.136 0.864 16 C -0.175 4.175 17 C -0.040 4.040 18 C 0.023 3.977 19 O -0.369 6.369 20 C -0.067 4.067 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.113 4.113 26 C -0.171 4.171 27 C -0.009 4.009 28 C -0.106 4.106 29 H 0.228 0.772 30 H 0.090 0.910 31 H -0.178 1.178 32 H -0.180 1.180 33 H 0.187 0.813 34 H 0.259 0.741 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.236 0.764 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.227 0.773 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.164 0.836 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.291 2.150 1.341 4.154 hybrid contribution 0.544 -0.720 0.683 1.132 sum 3.836 1.430 2.024 4.566 Atomic orbital electron populations 1.86535 1.17406 1.81811 1.49430 1.23999 0.85459 1.09349 0.96172 0.94991 0.80756 0.77611 0.87836 1.19638 1.07859 0.91342 0.96251 1.21580 1.01934 0.94061 0.89502 1.41685 1.54783 1.04144 1.18051 1.18438 0.99872 0.86473 0.94140 1.19664 1.05840 0.88737 1.01142 1.20587 0.96625 0.98315 0.93015 1.19547 1.08216 0.93292 0.96297 1.18185 0.77665 0.82943 0.85641 1.90784 1.44435 1.86021 1.20290 1.45847 1.64586 1.05511 1.20968 1.22542 0.94808 0.83039 0.97689 0.86380 1.23548 0.96220 0.94365 1.03389 1.20517 0.97083 0.92993 0.93371 1.21894 0.85667 0.95951 0.94227 1.86463 1.36488 1.77751 1.36247 1.19402 0.94812 0.96935 0.95522 1.21122 0.99110 0.98702 0.95211 1.21092 0.97591 0.96767 0.98936 1.21194 0.94357 0.99736 0.98863 1.21255 0.99318 0.98610 0.95325 1.21547 0.97503 0.94408 0.97865 1.23533 0.98155 0.92915 1.02478 1.20671 0.92265 0.89112 0.98866 1.18903 1.04611 0.92738 0.94371 0.77245 0.90970 1.17787 1.18025 0.81334 0.74073 0.85372 0.85348 0.76432 0.89967 0.88337 0.92700 0.92995 0.77341 0.86079 0.86305 0.86385 0.86271 0.83550 0.89314 0.90181 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.75 12.86 -35.23 -0.45 -1.20 16 2 C -0.04 -0.03 3.05 36.01 0.11 0.08 16 3 Si 0.69 -0.89 30.80 -169.99 -5.23 -6.13 16 4 C -0.14 -0.42 5.61 -102.69 -0.58 -1.00 16 5 C 0.06 0.07 10.43 -16.73 -0.17 -0.10 16 6 N -0.58 -0.11 6.05 -10.61 -0.06 -0.18 16 7 C 0.12 0.24 7.27 -83.95 -0.61 -0.37 16 8 C -0.13 -0.04 10.00 -39.85 -0.40 -0.44 16 9 C -0.07 -0.02 9.46 -39.53 -0.37 -0.39 16 10 C -0.17 -0.48 5.87 -104.98 -0.62 -1.09 16 11 C 0.57 2.05 7.76 -12.42 -0.10 1.96 16 12 O -0.54 -3.86 15.93 5.30 0.08 -3.78 16 13 N -0.72 -0.30 5.30 -54.02 -0.29 -0.59 16 14 C 0.12 0.03 3.89 -67.12 -0.26 -0.23 16 15 H 0.12 0.19 6.98 -51.93 -0.36 -0.18 16 16 C -0.14 0.20 6.43 -25.92 -0.17 0.03 16 17 C -0.04 0.00 1.06 -154.85 -0.16 -0.17 16 18 C 0.10 -0.06 6.38 37.16 0.24 0.18 16 19 O -0.56 0.13 10.04 -35.23 -0.35 -0.22 16 20 C -0.07 -0.11 5.04 -104.62 -0.53 -0.63 16 21 C -0.12 -0.13 9.20 -39.58 -0.36 -0.49 16 22 C -0.13 -0.17 10.05 -39.58 -0.40 -0.57 16 23 C -0.12 -0.21 10.05 -39.58 -0.40 -0.61 16 24 C -0.13 -0.27 10.05 -39.58 -0.40 -0.67 16 25 C -0.10 -0.24 8.83 -39.59 -0.35 -0.58 16 26 C -0.13 -0.10 6.99 -25.92 -0.18 -0.28 16 27 C 0.01 0.04 9.64 -38.86 -0.37 -0.33 16 28 C -0.10 -0.39 6.34 -105.15 -0.67 -1.05 16 29 H 0.38 -1.43 8.74 45.56 0.40 -1.03 16 30 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 31 H -0.25 -0.28 7.04 56.52 0.40 0.12 16 32 H -0.26 -0.29 7.11 56.52 0.40 0.11 16 33 H 0.17 -0.12 6.30 -52.49 -0.33 -0.45 16 34 H 0.42 -1.30 8.96 -40.82 -0.37 -1.67 16 35 H 0.13 -0.29 8.06 -52.49 -0.42 -0.71 16 36 H 0.13 -0.37 6.36 -52.49 -0.33 -0.70 16 37 H 0.40 -0.86 6.73 -40.82 -0.27 -1.14 16 38 H 0.08 -0.16 8.10 -51.93 -0.42 -0.59 16 39 H 0.10 -0.24 5.94 -51.93 -0.31 -0.55 16 40 H 0.05 -0.07 7.34 -51.93 -0.38 -0.45 16 41 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 42 H 0.38 -1.51 9.12 45.56 0.42 -1.09 16 43 H 0.12 -0.12 5.77 -52.49 -0.30 -0.42 16 44 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 45 H 0.12 0.02 8.06 -52.49 -0.42 -0.41 16 46 H 0.12 0.08 8.06 -52.49 -0.42 -0.34 16 47 H 0.15 0.37 5.44 -52.49 -0.29 0.08 16 48 H 0.09 0.09 8.10 -51.93 -0.42 -0.33 16 49 H 0.08 0.15 8.10 -51.93 -0.42 -0.27 16 50 H 0.14 0.63 7.64 -52.49 -0.40 0.23 16 LS Contribution 406.49 15.07 6.13 6.13 Total: 0.00 -11.43 406.49 -12.45 -23.89 By element: Atomic # 1 Polarization: -5.63 SS G_CDS: -5.52 Total: -11.15 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -6.75 Total: -6.77 kcal Atomic # 7 Polarization: -0.41 SS G_CDS: -0.35 Total: -0.77 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.72 Total: -5.20 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: -5.23 Total: -6.13 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -11.43 -12.45 -23.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_13287722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.947 kcal (2) G-P(sol) polarization free energy of solvation -11.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds