Wall clock time and date at job start Sat Mar 6 2021 21:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86305 * 109.47051 * 2 1 4 4 C 1.50702 * 109.47323 * 119.99725 * 2 1 3 5 5 C 1.34186 * 126.54257 * 255.00162 * 4 2 1 6 6 N 1.36872 * 109.96749 * 180.02562 * 5 4 2 7 7 C 1.37396 * 109.97926 * 359.97438 * 6 5 4 8 8 C 1.39334 * 133.25021 * 180.02562 * 7 6 5 9 9 C 1.36359 * 120.23594 * 180.02562 * 8 7 6 10 10 C 1.40172 * 120.66682 * 359.97205 * 9 8 7 11 11 C 1.47651 * 119.96772 * 180.02562 * 10 9 8 12 12 O 1.21579 * 119.99905 * 180.02562 * 11 10 9 13 13 N 1.34774 * 120.00315 * 0.02562 * 11 10 9 14 14 C 1.46505 * 119.99910 * 179.97438 * 13 11 10 15 15 H 1.08992 * 112.85024 * 23.81048 * 14 13 11 16 16 C 1.53782 * 113.61095 * 155.00280 * 14 13 11 17 17 C 1.53779 * 87.08094 * 139.98238 * 16 14 13 18 18 C 1.53005 * 113.61466 * 89.11356 * 17 16 14 19 19 O 1.42901 * 109.47123 * 179.97438 * 18 17 16 20 20 C 1.50706 * 113.61698 * 219.93540 * 17 16 14 21 21 C 1.38235 * 119.99660 * 359.72619 * 20 17 16 22 22 C 1.38236 * 119.99605 * 179.79261 * 21 20 17 23 23 C 1.38233 * 120.00087 * 0.45977 * 22 21 20 24 24 C 1.38239 * 119.99848 * 359.76980 * 23 22 21 25 25 C 1.38230 * 119.99993 * 179.97438 * 20 17 16 26 26 C 1.53776 * 87.08165 * 334.56736 * 17 16 14 27 27 C 1.39185 * 120.05635 * 0.24411 * 10 9 8 28 28 C 1.39235 * 119.39332 * 359.54661 * 27 10 9 29 29 H 0.96692 * 114.00149 * 59.99738 * 1 2 3 30 30 H 1.08999 * 109.47164 * 239.99932 * 2 1 3 31 31 H 1.48492 * 110.00021 * 60.00327 * 3 2 1 32 32 H 1.48506 * 109.99915 * 181.32235 * 3 2 1 33 33 H 1.08002 * 125.01877 * 359.97438 * 5 4 2 34 34 H 0.96992 * 125.00816 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.88304 * 0.02562 * 8 7 6 36 36 H 1.07996 * 119.66209 * 180.02562 * 9 8 7 37 37 H 0.97001 * 120.00344 * 0.02562 * 13 11 10 38 38 H 1.09000 * 113.61737 * 254.52851 * 16 14 13 39 39 H 1.09000 * 113.61747 * 25.35459 * 16 14 13 40 40 H 1.08994 * 109.46948 * 300.00039 * 18 17 16 41 41 H 1.09003 * 109.46935 * 60.00279 * 18 17 16 42 42 H 0.96694 * 113.99554 * 179.97438 * 19 18 17 43 43 H 1.08002 * 120.00135 * 359.97438 * 21 20 17 44 44 H 1.08000 * 119.99699 * 180.25480 * 22 21 20 45 45 H 1.07998 * 120.00161 * 179.79606 * 23 22 21 46 46 H 1.08000 * 119.99491 * 180.02562 * 24 23 22 47 47 H 1.08000 * 120.00333 * 359.97438 * 25 20 17 48 48 H 1.09004 * 113.61767 * 270.88422 * 26 17 16 49 49 H 1.09002 * 113.61481 * 139.98005 * 26 17 16 50 50 H 1.08001 * 120.30365 * 179.70045 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.4608 -0.1386 2.3229 6 7 2.8033 -1.1005 3.2345 7 6 2.4957 -2.3454 2.7413 8 6 2.6345 -3.6350 3.2503 9 6 2.2309 -4.7104 2.5155 10 6 1.6717 -4.5368 1.2419 11 6 1.2394 -5.7122 0.4598 12 8 0.7548 -5.5623 -0.6451 13 7 1.3819 -6.9512 0.9707 14 6 0.9524 -8.1173 0.1948 15 1 0.9298 -7.9268 -0.8781 16 6 1.6861 -9.4143 0.5749 17 6 0.3337 -10.1306 0.4244 18 6 0.0627 -10.6368 -0.9938 19 8 -1.2102 -11.2850 -1.0330 20 6 0.0857 -11.1796 1.4777 21 6 1.0373 -11.4203 2.4509 22 6 0.8080 -12.3795 3.4196 23 6 -0.3689 -13.1046 3.4092 24 6 -1.3185 -12.8671 2.4331 25 6 -1.0912 -11.9046 1.4674 26 6 -0.3283 -8.7772 0.7324 27 6 1.5280 -3.2578 0.7121 28 6 1.9352 -2.1577 1.4621 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5615 2.4679 1.2085 32 1 3.5346 1.7703 -0.0322 33 1 2.5972 0.9237 2.4621 34 1 3.2042 -0.9285 4.1008 35 1 3.0632 -3.7833 4.2304 36 1 2.3423 -5.7058 2.9193 37 1 1.7682 -7.0708 1.8524 38 1 2.4295 -9.7264 -0.1586 39 1 2.0712 -9.4154 1.5946 40 1 0.0638 -9.7952 -1.6863 41 1 0.8397 -11.3452 -1.2814 42 1 -1.4485 -11.6314 -1.9038 43 1 1.9588 -10.8569 2.4563 44 1 1.5497 -12.5647 4.1824 45 1 -0.5467 -13.8563 4.1640 46 1 -2.2381 -13.4334 2.4253 47 1 -1.8332 -11.7190 0.7048 48 1 -0.4953 -8.6046 1.7956 49 1 -1.2113 -8.5750 0.1260 50 1 1.1022 -3.1198 -0.2708 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_13287722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:33:29 Heat of formation + Delta-G solvation = 8.868250 kcal Electronic energy + Delta-G solvation = -33533.875018 eV Core-core repulsion = 29073.064578 eV Total energy + Delta-G solvation = -4460.810439 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.57797 -41.87654 -40.53805 -38.96058 -37.89678 -37.48749 -37.21382 -34.84303 -33.46189 -31.88535 -31.72007 -30.90114 -30.52291 -28.23052 -26.94167 -26.48199 -25.44244 -24.27860 -23.57754 -23.20935 -22.34223 -21.61751 -20.70725 -19.74393 -19.16422 -18.63814 -18.45053 -18.32996 -17.84054 -17.29760 -17.16551 -16.38160 -16.21247 -16.07693 -15.80247 -15.61983 -15.49675 -15.47572 -15.30925 -15.08892 -14.92139 -14.83793 -14.49335 -14.22097 -14.12110 -13.84950 -13.63007 -13.55853 -13.46418 -13.33598 -13.08837 -12.74945 -12.65289 -12.40798 -12.22790 -12.08295 -11.92985 -11.82453 -11.53794 -11.34056 -11.06830 -10.90653 -10.76301 -10.20701 -10.15338 -9.73703 -9.52114 -9.43284 -8.93417 -4.93274 -0.23291 0.09962 0.49164 0.59066 1.32638 1.33927 1.70657 1.78537 1.93475 1.96875 2.09213 2.80349 2.85976 3.12213 3.42829 3.47325 3.54036 3.59287 3.65659 3.69887 3.75653 3.87651 3.97433 4.01505 4.07845 4.17620 4.18702 4.24150 4.32413 4.36026 4.41250 4.45325 4.49535 4.52276 4.60503 4.66862 4.72682 4.76014 4.81434 4.85701 4.92777 4.98755 5.00442 5.07916 5.18150 5.21810 5.26371 5.32374 5.36584 5.46234 5.50259 5.65640 5.75128 5.81857 5.87006 6.20542 6.41732 6.48768 6.88818 6.94660 7.15508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.570 6.570 2 C -0.059 4.059 3 Si 0.790 3.210 4 C -0.180 4.180 5 C 0.057 3.943 6 N -0.573 5.573 7 C 0.110 3.890 8 C -0.127 4.127 9 C -0.062 4.062 10 C -0.177 4.177 11 C 0.563 3.437 12 O -0.584 6.584 13 N -0.700 5.700 14 C 0.122 3.878 15 H 0.102 0.898 16 C -0.122 4.122 17 C -0.038 4.038 18 C 0.098 3.902 19 O -0.579 6.579 20 C -0.073 4.073 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.015 4.015 28 C -0.130 4.130 29 H 0.399 0.601 30 H 0.071 0.929 31 H -0.281 1.281 32 H -0.286 1.286 33 H 0.188 0.812 34 H 0.438 0.562 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.415 0.585 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.392 0.608 43 H 0.144 0.856 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.139 0.861 48 H 0.088 0.912 49 H 0.060 0.940 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 1.311 2.317 5.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.168 4.168 3 Si 0.693 3.307 4 C -0.187 4.187 5 C -0.070 4.070 6 N -0.177 5.177 7 C 0.001 3.999 8 C -0.147 4.147 9 C -0.082 4.082 10 C -0.182 4.182 11 C 0.353 3.647 12 O -0.466 6.466 13 N -0.351 5.351 14 C 0.017 3.983 15 H 0.120 0.880 16 C -0.159 4.159 17 C -0.039 4.039 18 C 0.020 3.980 19 O -0.388 6.388 20 C -0.073 4.073 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.131 4.131 26 C -0.171 4.171 27 C -0.035 4.035 28 C -0.135 4.135 29 H 0.249 0.751 30 H 0.089 0.911 31 H -0.208 1.208 32 H -0.213 1.213 33 H 0.204 0.796 34 H 0.279 0.721 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.254 0.746 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.243 0.757 43 H 0.162 0.838 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.157 0.843 48 H 0.106 0.894 49 H 0.079 0.921 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.017 1.893 3.253 6.272 hybrid contribution -0.042 -0.702 0.109 0.711 sum 4.975 1.192 3.362 6.122 Atomic orbital electron populations 1.86476 1.18014 1.82541 1.50882 1.24422 0.85234 1.11558 0.95597 0.93762 0.77296 0.73981 0.85696 1.20109 1.09204 0.91547 0.97811 1.21878 1.00997 0.94974 0.89170 1.41684 1.54149 1.03348 1.18513 1.18723 0.99779 0.87724 0.93716 1.20076 1.04661 0.87695 1.02249 1.20933 0.95398 1.00188 0.91639 1.19616 1.08771 0.92325 0.97452 1.18417 0.77145 0.84010 0.85144 1.90755 1.46748 1.86721 1.22350 1.45718 1.63454 1.04535 1.21443 1.22507 0.95287 0.83571 0.96894 0.88019 1.23520 0.95605 0.92048 1.04741 1.20530 0.97842 0.92147 0.93353 1.21944 0.85781 0.96215 0.94041 1.86429 1.36761 1.77905 1.37679 1.19569 0.94672 0.97027 0.96020 1.21407 0.99722 0.98705 0.94658 1.21402 0.97765 0.96546 0.99406 1.21438 0.94590 1.00292 0.99080 1.21439 0.99972 0.98920 0.95675 1.21627 0.98098 0.95205 0.98135 1.23493 0.97668 0.93874 1.02019 1.20615 0.93918 0.90369 0.98558 1.19180 1.05548 0.93194 0.95568 0.75074 0.91131 1.20800 1.21310 0.79576 0.72143 0.81982 0.81783 0.74603 0.88723 0.86523 0.92527 0.92189 0.75709 0.83797 0.84491 0.85187 0.85708 0.84321 0.89367 0.92075 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.61 12.86 -148.98 -1.92 -4.52 16 2 C -0.06 -0.19 3.05 71.24 0.22 0.02 16 3 Si 0.79 -1.84 30.80 68.60 2.11 0.27 16 4 C -0.18 -1.33 5.61 -18.61 -0.10 -1.43 16 5 C 0.06 0.16 10.43 82.98 0.87 1.03 16 6 N -0.57 0.08 6.05 -187.47 -1.13 -1.05 16 7 C 0.11 0.43 7.27 39.19 0.28 0.72 16 8 C -0.13 0.13 10.00 22.10 0.22 0.35 16 9 C -0.06 0.04 9.46 22.30 0.21 0.25 16 10 C -0.18 -1.21 5.87 -20.09 -0.12 -1.33 16 11 C 0.56 4.93 7.76 86.73 0.67 5.61 16 12 O -0.58 -10.20 15.93 -3.96 -0.06 -10.26 16 13 N -0.70 -0.51 5.30 -443.09 -2.35 -2.86 16 14 C 0.12 0.10 3.89 45.52 0.18 0.28 16 15 H 0.10 0.48 6.98 -2.39 -0.02 0.46 16 16 C -0.12 0.51 6.43 31.12 0.20 0.71 16 17 C -0.04 0.00 1.06 -52.40 -0.06 -0.05 16 18 C 0.10 -0.07 6.38 71.98 0.46 0.39 16 19 O -0.58 -0.34 10.04 -148.98 -1.50 -1.84 16 20 C -0.07 -0.21 5.04 -19.87 -0.10 -0.31 16 21 C -0.13 -0.08 9.20 22.27 0.20 0.12 16 22 C -0.13 -0.19 10.05 22.27 0.22 0.04 16 23 C -0.14 -0.43 10.05 22.27 0.22 -0.20 16 24 C -0.14 -0.69 10.05 22.27 0.22 -0.46 16 25 C -0.11 -0.64 8.83 22.27 0.20 -0.44 16 26 C -0.13 -0.29 6.99 31.12 0.22 -0.08 16 27 C -0.01 -0.16 9.64 22.74 0.22 0.06 16 28 C -0.13 -1.22 6.34 -20.21 -0.13 -1.35 16 29 H 0.40 -2.44 8.74 -74.06 -0.65 -3.09 16 30 H 0.07 0.16 7.96 -2.39 -0.02 0.14 16 31 H -0.28 -0.62 7.04 99.48 0.70 0.08 16 32 H -0.29 -0.74 7.11 99.48 0.71 -0.04 16 33 H 0.19 -0.32 6.30 -2.91 -0.02 -0.34 16 34 H 0.44 -3.30 8.96 -92.71 -0.83 -4.13 16 35 H 0.16 -1.30 8.06 -2.91 -0.02 -1.32 16 36 H 0.16 -1.42 6.36 -2.91 -0.02 -1.44 16 37 H 0.42 -2.50 6.73 -92.71 -0.62 -3.13 16 38 H 0.09 -0.56 8.10 -2.39 -0.02 -0.58 16 39 H 0.12 -0.90 5.94 -2.39 -0.01 -0.92 16 40 H 0.06 -0.08 7.34 -2.39 -0.02 -0.09 16 41 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.39 -2.75 9.12 -74.06 -0.68 -3.42 16 43 H 0.14 -0.68 5.77 -2.91 -0.02 -0.70 16 44 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 45 H 0.13 -0.03 8.06 -2.91 -0.02 -0.05 16 46 H 0.12 0.30 8.06 -2.91 -0.02 0.27 16 47 H 0.14 0.92 5.44 -2.91 -0.02 0.90 16 48 H 0.09 0.20 8.10 -2.38 -0.02 0.18 16 49 H 0.06 0.37 8.10 -2.39 -0.02 0.35 16 50 H 0.12 1.63 7.64 -2.91 -0.02 1.61 16 Total: 0.00 -29.95 406.49 -2.23 -32.18 By element: Atomic # 1 Polarization: -14.11 SS G_CDS: -1.70 Total: -15.81 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.31 Total: 3.90 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -3.48 Total: -3.92 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -3.47 Total: -16.62 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.11 Total: 0.27 kcal Total: -29.95 -2.23 -32.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_13287722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.048 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds