Wall clock time and date at job start Sat Mar 6 2021 21:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47101 * 2 1 4 4 C 1.50704 * 109.47131 * 240.00176 * 2 1 3 5 5 C 1.38558 * 120.32265 * 119.99509 * 4 2 1 6 6 N 1.31524 * 120.90070 * 179.97438 * 5 4 2 7 7 C 1.32715 * 121.64545 * 0.02562 * 6 5 4 8 8 C 1.48164 * 119.72380 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00245 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00160 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00306 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.90360 * 23.74658 * 11 10 8 13 13 C 1.53784 * 113.61588 * 154.99683 * 11 10 8 14 14 C 1.53777 * 87.08042 * 139.98247 * 13 11 10 15 15 C 1.52997 * 113.61687 * 89.19979 * 14 13 11 16 16 O 1.42903 * 109.47613 * 181.53079 * 15 14 13 17 17 C 1.50701 * 113.61459 * 220.02087 * 14 13 11 18 18 C 1.38235 * 119.99808 * 178.47044 * 17 14 13 19 19 C 1.38243 * 119.99602 * 179.97438 * 18 17 14 20 20 C 1.38232 * 120.00069 * 0.09581 * 19 18 17 21 21 C 1.38234 * 119.99842 * 359.83724 * 20 19 18 22 22 C 1.38230 * 119.99865 * 358.44790 * 17 14 13 23 23 C 1.53780 * 87.17473 * 334.61067 * 14 13 11 24 24 C 1.39310 * 120.55248 * 0.27137 * 7 6 5 25 25 C 1.38590 * 119.05864 * 359.44014 * 24 7 6 26 26 H 0.96698 * 113.99759 * 299.99271 * 1 2 3 27 27 H 1.09002 * 109.47529 * 120.00122 * 2 1 3 28 28 H 1.48493 * 110.00009 * 178.68256 * 3 2 1 29 29 H 1.48500 * 109.99977 * 300.00546 * 3 2 1 30 30 H 1.07996 * 119.54905 * 359.97438 * 5 4 2 31 31 H 0.97001 * 119.99792 * 359.97438 * 10 8 7 32 32 H 1.08997 * 113.61422 * 25.43537 * 13 11 10 33 33 H 1.08994 * 113.61322 * 254.52873 * 13 11 10 34 34 H 1.09004 * 109.47382 * 301.53103 * 15 14 13 35 35 H 1.09003 * 109.47235 * 61.52646 * 15 14 13 36 36 H 0.96695 * 114.00395 * 180.02562 * 16 15 14 37 37 H 1.08000 * 120.00616 * 359.70324 * 18 17 14 38 38 H 1.08001 * 119.99556 * 179.97438 * 19 18 17 39 39 H 1.07997 * 119.99666 * 179.97438 * 20 19 18 40 40 H 1.08008 * 119.99453 * 180.11401 * 21 20 19 41 41 H 1.08001 * 120.00350 * 359.97438 * 22 17 14 42 42 H 1.08999 * 113.61773 * 139.94099 * 23 14 13 43 43 H 1.09003 * 113.61259 * 270.84108 * 23 14 13 44 44 H 1.07992 * 120.47194 * 179.70091 * 24 7 6 45 45 H 1.07997 * 120.75936 * 180.28090 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7283 -0.0434 -2.1470 6 7 3.1733 -0.6524 -3.2244 7 6 2.8801 -1.9217 -3.4781 8 6 3.4049 -2.5659 -4.7048 9 8 3.1391 -3.7276 -4.9423 10 7 4.1770 -1.8635 -5.5573 11 6 4.6955 -2.5003 -6.7705 12 1 4.0955 -3.3515 -7.0924 13 6 5.0115 -1.5067 -7.9009 14 6 6.2651 -2.3505 -8.1857 15 6 6.0259 -3.4866 -9.1821 16 8 7.2331 -4.2318 -9.3539 17 6 7.4838 -1.5284 -8.5172 18 6 8.6921 -2.1525 -8.7650 19 6 9.8099 -1.3982 -9.0696 20 6 9.7197 -0.0199 -9.1244 21 6 8.5111 0.6040 -8.8780 22 6 7.3932 -0.1502 -8.5739 23 6 6.2050 -2.7978 -6.7156 24 6 2.0787 -2.6518 -2.6032 25 6 1.6006 -2.0375 -1.4566 26 1 -0.3933 0.4416 0.7651 27 1 1.7924 -0.5138 0.8900 28 1 3.5346 1.7703 0.0321 29 1 1.5614 2.4679 -1.2084 30 1 2.9875 0.9907 -1.9742 31 1 4.3889 -0.9360 -5.3679 32 1 5.2340 -0.4998 -7.5477 33 1 4.2825 -1.5207 -8.7110 34 1 5.2439 -4.1443 -8.8024 35 1 5.7164 -3.0701 -10.1407 36 1 7.1551 -4.9695 -9.9742 37 1 8.7639 -3.2290 -8.7164 38 1 10.7540 -1.8858 -9.2628 39 1 10.5931 0.5692 -9.3620 40 1 8.4403 1.6808 -8.9226 41 1 6.4490 0.3374 -8.3810 42 1 6.4381 -3.8526 -6.5701 43 1 6.7544 -2.1445 -6.0377 44 1 1.8369 -3.6832 -2.8134 45 1 0.9810 -2.5791 -0.7572 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_13287726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:33:33 Heat of formation + Delta-G solvation = -13.269228 kcal Electronic energy + Delta-G solvation = -28669.533599 eV Core-core repulsion = 24619.753106 eV Total energy + Delta-G solvation = -4049.780492 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.18596 -41.62417 -40.20757 -38.95201 -37.80185 -37.26336 -35.06218 -33.86663 -33.17425 -31.79032 -31.69385 -28.65414 -27.63099 -27.02157 -25.21035 -24.92055 -23.82623 -23.23996 -22.46454 -21.81936 -20.04547 -19.13088 -18.76959 -18.52162 -18.19727 -17.75137 -17.09669 -16.81963 -16.51342 -16.44355 -16.20911 -15.96969 -15.72234 -15.52360 -15.39636 -15.23531 -14.79302 -14.52185 -14.40921 -14.16649 -14.04435 -13.96600 -13.64139 -13.52540 -13.40110 -13.13568 -12.55624 -12.47122 -12.31627 -12.11747 -11.91797 -11.66006 -11.53039 -11.40038 -11.18269 -10.92710 -10.79411 -10.62017 -10.27457 -10.12142 -9.78781 -9.56342 -4.95896 -0.72875 -0.08264 0.44225 0.53933 1.24028 1.40023 1.65686 1.85054 1.94397 2.49844 2.76118 2.80837 3.06800 3.22551 3.35388 3.42114 3.49444 3.57977 3.64643 3.71375 3.81527 3.84437 3.95937 4.12152 4.12611 4.19530 4.29595 4.30378 4.36023 4.47373 4.47597 4.54996 4.60681 4.69141 4.73887 4.74741 4.80073 4.86852 4.92167 4.92964 5.01039 5.15679 5.23395 5.26520 5.36046 5.60862 5.69502 5.76126 6.13251 6.15460 6.44689 6.87093 6.87539 6.91074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.076 4.076 3 Si 0.772 3.228 4 C -0.108 4.108 5 C 0.081 3.919 6 N -0.461 5.461 7 C 0.059 3.941 8 C 0.572 3.428 9 O -0.561 6.561 10 N -0.690 5.690 11 C 0.119 3.881 12 H 0.112 0.888 13 C -0.124 4.124 14 C -0.036 4.036 15 C 0.099 3.901 16 O -0.579 6.579 17 C -0.075 4.075 18 C -0.110 4.110 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.111 4.111 25 C -0.049 4.049 26 H 0.409 0.591 27 H 0.110 0.890 28 H -0.282 1.282 29 H -0.293 1.293 30 H 0.161 0.839 31 H 0.418 0.582 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.158 0.842 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 3.578 4.348 6.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.186 4.186 3 Si 0.677 3.323 4 C -0.111 4.111 5 C -0.079 4.079 6 N -0.173 5.173 7 C -0.079 4.079 8 C 0.357 3.643 9 O -0.439 6.439 10 N -0.339 5.339 11 C 0.014 3.986 12 H 0.129 0.871 13 C -0.162 4.162 14 C -0.036 4.036 15 C 0.022 3.978 16 O -0.388 6.388 17 C -0.075 4.075 18 C -0.128 4.128 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.168 4.168 24 C -0.132 4.132 25 C -0.075 4.075 26 H 0.261 0.739 27 H 0.127 0.873 28 H -0.209 1.209 29 H -0.220 1.220 30 H 0.177 0.823 31 H 0.255 0.745 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.244 0.756 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.175 0.825 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.218 3.893 2.994 5.060 hybrid contribution -0.300 -0.985 -0.077 1.033 sum -1.518 2.908 2.918 4.390 Atomic orbital electron populations 1.86428 1.16502 1.82550 1.51755 1.24746 0.86470 1.11147 0.96259 0.93996 0.77690 0.75235 0.85334 1.21043 0.97288 0.95561 0.97175 1.22664 0.95750 0.99704 0.89736 1.67424 1.20874 1.09245 1.19712 1.21182 0.99213 0.91028 0.96488 1.18033 0.78232 0.85369 0.82627 1.90779 1.60272 1.17250 1.75629 1.45795 1.49667 1.16279 1.22194 1.22699 0.94059 0.97563 0.84250 0.87060 1.23507 0.96065 0.98801 0.97822 1.20517 0.93198 0.95094 0.94815 1.21920 0.86770 0.91698 0.97427 1.86421 1.34637 1.48460 1.69270 1.19580 0.94346 0.93426 1.00112 1.21566 0.92181 1.01278 0.97753 1.21458 0.99173 0.94486 1.00701 1.21444 0.98553 0.95031 1.00248 1.21399 0.92979 1.00759 1.00090 1.21387 0.99522 0.93375 1.00478 1.23490 0.95715 1.02043 0.95576 1.22390 0.94870 1.02365 0.93541 1.21821 0.95819 0.93628 0.96188 0.73917 0.87284 1.20921 1.21998 0.82277 0.74453 0.87299 0.88470 0.92167 0.92200 0.75563 0.84283 0.85388 0.85000 0.84643 0.84330 0.91287 0.89907 0.82456 0.81002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.61 12.75 -148.98 -1.90 0.71 16 2 C -0.08 0.37 2.83 71.24 0.20 0.57 16 3 Si 0.77 -4.40 29.82 68.60 2.05 -2.35 16 4 C -0.11 -0.19 5.44 -19.69 -0.11 -0.30 16 5 C 0.08 0.38 9.84 84.82 0.83 1.22 16 6 N -0.46 -3.27 9.54 -184.92 -1.76 -5.04 16 7 C 0.06 0.46 6.75 41.91 0.28 0.74 16 8 C 0.57 5.33 7.81 86.88 0.68 6.01 16 9 O -0.56 -8.20 15.93 -3.77 -0.06 -8.26 16 10 N -0.69 -2.92 5.35 -442.32 -2.37 -5.29 16 11 C 0.12 0.26 3.89 45.58 0.18 0.44 16 12 H 0.11 0.46 6.97 -2.39 -0.02 0.45 16 13 C -0.12 0.23 6.41 31.12 0.20 0.43 16 14 C -0.04 -0.04 1.04 -52.40 -0.05 -0.09 16 15 C 0.10 -0.06 6.36 71.98 0.46 0.39 16 16 O -0.58 -0.21 10.19 -148.98 -1.52 -1.73 16 17 C -0.07 -0.32 5.02 -19.87 -0.10 -0.42 16 18 C -0.11 -0.69 8.84 22.27 0.20 -0.49 16 19 C -0.14 -0.75 10.05 22.27 0.22 -0.53 16 20 C -0.13 -0.56 10.05 22.27 0.22 -0.34 16 21 C -0.13 -0.43 10.05 22.27 0.22 -0.21 16 22 C -0.13 -0.37 9.19 22.27 0.20 -0.17 16 23 C -0.13 -0.41 7.01 31.18 0.22 -0.19 16 24 C -0.11 -0.55 9.63 22.61 0.22 -0.33 16 25 C -0.05 -0.07 9.76 22.45 0.22 0.15 16 26 H 0.41 -6.14 8.74 -74.06 -0.65 -6.79 16 27 H 0.11 -1.07 7.96 -2.39 -0.02 -1.09 16 28 H -0.28 0.11 7.11 99.48 0.71 0.82 16 29 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 30 H 0.16 0.39 4.89 -2.91 -0.01 0.38 16 31 H 0.42 0.74 8.06 -92.71 -0.75 -0.01 16 32 H 0.11 -0.39 5.98 -2.39 -0.01 -0.40 16 33 H 0.10 -0.40 8.10 -2.39 -0.02 -0.42 16 34 H 0.06 -0.12 7.34 -2.39 -0.02 -0.14 16 35 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.39 -2.91 9.12 -74.06 -0.68 -3.58 16 37 H 0.14 0.94 5.58 -2.91 -0.02 0.92 16 38 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 39 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 40 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 41 H 0.14 -0.19 5.80 -2.91 -0.02 -0.21 16 42 H 0.07 0.38 8.10 -2.39 -0.02 0.36 16 43 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 44 H 0.16 0.58 7.64 -2.91 -0.02 0.56 16 45 H 0.17 -0.62 8.06 -2.91 -0.02 -0.65 16 Total: 0.00 -22.13 370.49 -2.23 -24.36 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: -0.96 Total: -9.27 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.30 Total: 6.88 kcal Atomic # 7 Polarization: -6.20 SS G_CDS: -4.13 Total: -10.33 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -3.48 Total: -9.28 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: 2.05 Total: -2.35 kcal Total: -22.13 -2.23 -24.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_13287726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.088 kcal (2) G-P(sol) polarization free energy of solvation -22.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds