Wall clock time and date at job start Sat Mar 6 2021 21:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38978 * 119.95393 * 2 1 4 4 O 1.35709 * 119.91382 * 359.97438 * 3 2 1 5 5 C 1.39017 * 120.17298 * 180.02562 * 3 2 1 6 6 C 1.50701 * 119.95294 * 180.02562 * 5 3 2 7 7 O 1.42904 * 109.47044 * 74.97820 * 6 5 3 8 8 Si 1.86295 * 109.47138 * 194.97157 * 6 5 3 9 9 C 1.37676 * 120.09110 * 359.97438 * 5 3 2 10 10 C 1.39753 * 119.90789 * 0.02562 * 9 5 3 11 11 C 1.47608 * 120.08579 * 179.97438 * 10 9 5 12 12 O 1.21586 * 119.99786 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00199 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00296 * 180.02562 * 13 11 10 15 15 H 1.09006 * 112.85058 * 336.19416 * 14 13 11 16 16 C 1.53784 * 113.61712 * 107.50212 * 14 13 11 17 17 C 1.53779 * 87.08310 * 139.98431 * 16 14 13 18 18 C 1.52994 * 113.61568 * 89.11873 * 17 16 14 19 19 O 1.42893 * 109.47525 * 82.50136 * 18 17 16 20 20 C 1.50702 * 113.61370 * 220.02271 * 17 16 14 21 21 C 1.38238 * 119.99707 * 331.52436 * 20 17 16 22 22 C 1.38238 * 119.99774 * 179.74918 * 21 20 17 23 23 C 1.38233 * 119.99572 * 0.54480 * 22 21 20 24 24 C 1.38231 * 120.00468 * 359.70408 * 23 22 21 25 25 C 1.38231 * 120.00071 * 151.79615 * 20 17 16 26 26 C 1.53777 * 113.61666 * 204.99705 * 14 13 11 27 27 C 1.37721 * 119.95338 * 180.29701 * 2 1 3 28 28 H 1.08997 * 109.46577 * 89.99854 * 1 2 3 29 29 H 1.08998 * 109.47025 * 210.00128 * 1 2 3 30 30 H 1.09003 * 109.46662 * 330.00635 * 1 2 3 31 31 H 0.96702 * 114.00059 * 270.02590 * 4 3 2 32 32 H 1.09002 * 109.47374 * 314.97772 * 6 5 3 33 33 H 0.96710 * 113.99695 * 299.99217 * 7 6 5 34 34 H 1.48509 * 109.99473 * 60.00293 * 8 6 5 35 35 H 1.48501 * 109.99962 * 181.31744 * 8 6 5 36 36 H 1.07992 * 120.04676 * 180.02562 * 9 5 3 37 37 H 0.97001 * 119.99859 * 359.97438 * 13 11 10 38 38 H 1.09001 * 113.61403 * 25.43277 * 16 14 13 39 39 H 1.09003 * 113.61161 * 254.53492 * 16 14 13 40 40 H 1.09003 * 109.46800 * 202.50563 * 18 17 16 41 41 H 1.09005 * 109.47162 * 322.49607 * 18 17 16 42 42 H 0.96701 * 114.00585 * 179.97438 * 19 18 17 43 43 H 1.08007 * 120.00098 * 359.97438 * 21 20 17 44 44 H 1.07999 * 120.00002 * 180.27568 * 22 21 20 45 45 H 1.08011 * 119.99643 * 179.72753 * 23 22 21 46 46 H 1.08002 * 119.99966 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.00098 * 0.02562 * 25 20 17 48 48 H 1.09012 * 113.61226 * 105.46803 * 26 14 13 49 49 H 1.08996 * 113.69492 * 334.58180 * 26 14 13 50 50 H 1.07993 * 120.04995 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5912 1.2095 -0.0005 6 6 4.3386 2.5181 0.0000 7 8 4.2721 3.1040 1.3017 8 14 6.1198 2.2160 -0.4546 9 6 4.2860 0.0209 -0.0005 10 6 3.5918 -1.1921 -0.0005 11 6 4.3328 -2.4687 -0.0011 12 8 5.5487 -2.4658 -0.0011 13 7 3.6617 -3.6374 -0.0016 14 6 4.3970 -4.9044 -0.0016 15 1 5.4046 -4.8091 -0.4067 16 6 4.3393 -5.6503 1.3420 17 6 4.1915 -6.9459 0.5269 18 6 5.5275 -7.5966 0.1627 19 8 5.9927 -8.3783 1.2647 20 6 3.2055 -7.9210 1.1167 21 6 2.9818 -7.9378 2.4807 22 6 2.0735 -8.8288 3.0212 23 6 1.3973 -9.7106 2.1989 24 6 1.6249 -9.6973 0.8356 25 6 2.5290 -8.8025 0.2944 26 6 3.6021 -6.0781 -0.5976 27 6 2.1947 -1.1932 -0.0062 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.3223 2.7176 -0.8841 32 1 3.8878 3.1944 -0.7263 33 1 3.3724 3.2892 1.6042 34 1 6.2025 1.6067 -1.8064 35 1 6.8749 3.4944 -0.4266 36 1 5.3659 0.0259 -0.0005 37 1 2.6917 -3.6397 -0.0013 38 1 3.4602 -5.4073 1.9389 39 1 5.2671 -5.5962 1.9116 40 1 5.3933 -8.2390 -0.7076 41 1 6.2585 -6.8214 -0.0672 42 1 6.8370 -8.8215 1.1040 43 1 3.5139 -7.2523 3.1238 44 1 1.8953 -8.8389 4.0864 45 1 0.6909 -10.4097 2.6218 46 1 1.0969 -10.3865 0.1932 47 1 2.7074 -8.7927 -0.7707 48 1 3.9347 -6.3696 -1.5940 49 1 2.5213 -5.9533 -0.5319 50 1 1.6548 -2.1285 -0.0106 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_13287732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:33:39 Heat of formation + Delta-G solvation = -82.460326 kcal Electronic energy + Delta-G solvation = -33219.894097 eV Core-core repulsion = 28758.319353 eV Total energy + Delta-G solvation = -4461.574744 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.00900 -41.44395 -40.24938 -38.96248 -37.75727 -37.57696 -37.14937 -34.92921 -33.98553 -32.21574 -31.78422 -31.27554 -28.25361 -28.00914 -26.94346 -26.87087 -25.36187 -24.26864 -23.14312 -22.44932 -22.03660 -21.51148 -19.75016 -19.53956 -18.78284 -18.45806 -18.12270 -17.92666 -17.52609 -16.94670 -16.74098 -16.20746 -16.13347 -16.03775 -15.81240 -15.65812 -15.41576 -15.31671 -15.02049 -14.69192 -14.39081 -14.25105 -14.25054 -14.14393 -13.77944 -13.69122 -13.42344 -13.36741 -13.31185 -13.11514 -12.91204 -12.80654 -12.44369 -12.29317 -12.22320 -12.14121 -12.06995 -11.48501 -11.35642 -11.32399 -11.20288 -11.02011 -10.79428 -10.17868 -9.96052 -9.76301 -9.68128 -9.54405 -4.94648 -0.43226 0.06261 0.51010 0.55651 1.27191 1.50599 1.60658 1.81721 2.03930 2.54591 2.91656 3.03771 3.06760 3.32221 3.38046 3.53949 3.60615 3.68986 3.73732 3.84556 3.90312 4.00246 4.04673 4.06952 4.19583 4.20060 4.29848 4.32629 4.36551 4.46689 4.52653 4.56941 4.60822 4.66481 4.69452 4.72766 4.77792 4.79753 4.81033 4.99795 5.00532 5.01412 5.04818 5.11791 5.18728 5.20292 5.21391 5.28764 5.46924 5.58164 5.64190 5.68398 5.75559 6.16857 6.43559 6.56028 6.63316 6.89334 7.10246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 C 0.146 3.854 4 O -0.496 6.496 5 C -0.154 4.154 6 C -0.067 4.067 7 O -0.547 6.547 8 Si 0.773 3.227 9 C -0.058 4.058 10 C -0.148 4.148 11 C 0.560 3.440 12 O -0.572 6.572 13 N -0.700 5.700 14 C 0.122 3.878 15 H 0.106 0.894 16 C -0.136 4.136 17 C -0.040 4.040 18 C 0.098 3.902 19 O -0.586 6.586 20 C -0.055 4.055 21 C -0.119 4.119 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.058 4.058 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.086 0.914 33 H 0.378 0.622 34 H -0.269 1.269 35 H -0.286 1.286 36 H 0.138 0.862 37 H 0.415 0.585 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.395 0.605 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 -2.832 -3.646 7.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.117 4.117 3 C 0.100 3.900 4 O -0.310 6.310 5 C -0.155 4.155 6 C -0.177 4.177 7 O -0.354 6.354 8 Si 0.676 3.324 9 C -0.077 4.077 10 C -0.152 4.152 11 C 0.348 3.652 12 O -0.453 6.453 13 N -0.351 5.351 14 C 0.017 3.983 15 H 0.124 0.876 16 C -0.175 4.175 17 C -0.040 4.040 18 C 0.020 3.980 19 O -0.394 6.394 20 C -0.055 4.055 21 C -0.137 4.137 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.152 4.152 27 C -0.077 4.077 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.274 0.726 32 H 0.103 0.897 33 H 0.227 0.773 34 H -0.194 1.194 35 H -0.213 1.213 36 H 0.155 0.845 37 H 0.253 0.747 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.244 0.756 43 H 0.135 0.865 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.114 0.886 49 H 0.126 0.874 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.747 -2.549 -3.399 6.371 hybrid contribution -1.090 0.562 -0.785 1.456 sum -5.838 -1.987 -4.184 7.452 Atomic orbital electron populations 1.20772 0.88121 1.04222 1.03692 1.20432 0.98348 0.91699 1.01252 1.18402 0.88397 0.86134 0.97052 1.84666 1.75477 1.35404 1.35478 1.20591 0.94147 0.95905 1.04860 1.25218 1.12327 0.91515 0.88598 1.86714 1.33929 1.82892 1.31903 0.91907 0.75436 0.82609 0.82434 1.21005 1.00071 0.90873 0.95716 1.19856 0.94411 0.92709 1.08181 1.18376 0.86876 0.84526 0.75410 1.90787 1.15018 1.88053 1.51400 1.45754 1.10844 1.04544 1.73975 1.22541 0.97383 0.81215 0.97178 0.87604 1.23537 1.02863 0.94041 0.97032 1.20543 0.93631 0.92142 0.97715 1.21994 0.93146 0.94110 0.88745 1.86472 1.43977 1.67863 1.41088 1.19466 0.96092 0.96626 0.93298 1.21104 0.98089 0.99442 0.95065 1.21367 0.97009 0.96175 1.00506 1.21398 1.00450 0.99409 0.94245 1.21396 0.98594 0.99141 0.95507 1.21154 0.96916 0.95639 1.00357 1.23398 1.01315 0.92077 0.98395 1.21379 0.91654 0.99150 0.95484 0.89604 0.89798 0.90933 0.72597 0.89660 0.77258 1.19402 1.21316 0.84494 0.74688 0.88905 0.91848 0.91967 0.92397 0.75592 0.86510 0.85404 0.85062 0.84690 0.84813 0.88613 0.87379 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.83 9.78 71.24 0.70 1.53 16 2 C -0.12 0.38 5.89 -19.81 -0.12 0.26 16 3 C 0.15 -0.15 6.62 22.63 0.15 0.00 16 4 O -0.50 2.15 11.41 -90.29 -1.03 1.12 16 5 C -0.15 -0.33 5.27 -19.81 -0.10 -0.44 16 6 C -0.07 -0.17 2.33 71.24 0.17 0.00 16 7 O -0.55 -2.56 12.65 -148.98 -1.89 -4.44 16 8 Si 0.77 3.31 30.17 68.60 2.07 5.38 16 9 C -0.06 -0.25 8.20 22.50 0.18 -0.06 16 10 C -0.15 -0.30 5.88 -20.08 -0.12 -0.42 16 11 C 0.56 2.49 7.76 86.72 0.67 3.16 16 12 O -0.57 -7.10 15.94 -3.99 -0.06 -7.17 16 13 N -0.70 1.64 5.30 -443.13 -2.35 -0.71 16 14 C 0.12 -0.22 3.89 45.52 0.18 -0.05 16 15 H 0.11 0.17 6.98 -2.38 -0.02 0.15 16 16 C -0.14 0.06 5.98 31.12 0.19 0.24 16 17 C -0.04 0.07 0.89 -52.40 -0.05 0.03 16 18 C 0.10 -0.19 6.38 71.98 0.46 0.27 16 19 O -0.59 -0.83 13.13 -148.98 -1.96 -2.78 16 20 C -0.05 -0.07 4.33 -19.87 -0.09 -0.16 16 21 C -0.12 -0.41 9.02 22.27 0.20 -0.21 16 22 C -0.13 -0.39 10.05 22.27 0.22 -0.17 16 23 C -0.14 -0.25 10.05 22.27 0.22 -0.03 16 24 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 25 C -0.12 -0.03 9.39 22.27 0.21 0.18 16 26 C -0.11 0.68 6.63 31.12 0.21 0.89 16 27 C -0.06 0.21 9.18 22.50 0.21 0.42 16 28 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H 0.08 -0.79 8.08 -2.39 -0.02 -0.81 16 30 H 0.07 -0.42 7.52 -2.39 -0.02 -0.43 16 31 H 0.41 -5.09 9.06 -74.06 -0.67 -5.76 16 32 H 0.09 -0.05 7.82 -2.39 -0.02 -0.07 16 33 H 0.38 0.09 8.60 -74.05 -0.64 -0.55 16 34 H -0.27 -1.93 7.11 99.48 0.71 -1.22 16 35 H -0.29 -2.82 7.11 99.48 0.71 -2.11 16 36 H 0.14 0.70 4.70 -2.91 -0.01 0.69 16 37 H 0.41 -3.51 6.75 -92.71 -0.63 -4.13 16 38 H 0.09 -0.09 7.45 -2.39 -0.02 -0.10 16 39 H 0.06 0.21 8.10 -2.39 -0.02 0.19 16 40 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.06 -0.17 7.34 -2.38 -0.02 -0.19 16 42 H 0.39 -2.49 9.12 -74.06 -0.68 -3.16 16 43 H 0.12 0.38 7.03 -2.91 -0.02 0.36 16 44 H 0.13 0.03 8.06 -2.91 -0.02 0.00 16 45 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 46 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 47 H 0.13 -0.49 8.03 -2.91 -0.02 -0.51 16 48 H 0.10 -0.77 8.10 -2.38 -0.02 -0.79 16 49 H 0.11 -0.87 8.07 -2.39 -0.02 -0.89 16 50 H 0.16 -1.70 6.39 -2.91 -0.02 -1.72 16 Total: 0.00 -22.83 409.98 -3.05 -25.88 By element: Atomic # 1 Polarization: -21.30 SS G_CDS: -1.55 Total: -22.84 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 3.72 Total: 5.57 kcal Atomic # 7 Polarization: 1.64 SS G_CDS: -2.35 Total: -0.71 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -4.93 Total: -13.28 kcal Atomic # 14 Polarization: 3.31 SS G_CDS: 2.07 Total: 5.38 kcal Total: -22.83 -3.05 -25.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_13287732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.584 kcal (2) G-P(sol) polarization free energy of solvation -22.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds