Wall clock time and date at job start Sat Mar 6 2021 21:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86295 * 109.47522 * 2 1 4 4 C 1.50706 * 109.47060 * 120.00231 * 2 1 3 5 5 C 1.38240 * 119.96962 * 245.02244 * 4 2 1 6 6 C 1.38292 * 120.11024 * 179.97438 * 5 4 2 7 7 C 1.38122 * 120.05498 * 359.76770 * 6 5 4 8 8 C 1.38759 * 119.94155 * 0.50936 * 7 6 5 9 9 O 1.35904 * 120.05121 * 179.74615 * 8 7 6 10 10 C 1.42896 * 117.00266 * 359.72431 * 9 8 7 11 11 C 1.50701 * 109.47005 * 180.02562 * 10 9 8 12 12 O 1.21277 * 119.99990 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99877 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00137 * 180.02562 * 13 11 10 15 15 H 1.09000 * 112.84510 * 23.79898 * 14 13 11 16 16 C 1.53776 * 113.61337 * 155.00130 * 14 13 11 17 17 C 1.53786 * 87.07840 * 140.06502 * 16 14 13 18 18 C 1.53002 * 113.61243 * 89.20097 * 17 16 14 19 19 O 1.42898 * 109.46836 * 181.53124 * 18 17 16 20 20 C 1.50701 * 113.61361 * 220.01530 * 17 16 14 21 21 C 1.38237 * 120.00201 * 305.64211 * 20 17 16 22 22 C 1.38226 * 120.00370 * 179.97438 * 21 20 17 23 23 C 1.38246 * 119.99900 * 0.08915 * 22 21 20 24 24 C 1.38234 * 119.99750 * 359.97438 * 23 22 21 25 25 C 1.38230 * 120.00038 * 125.70770 * 20 17 16 26 26 C 1.53778 * 113.68689 * 252.53797 * 14 13 11 27 27 C 1.38168 * 119.96988 * 64.99690 * 4 2 1 28 28 H 0.96699 * 113.99540 * 59.99550 * 1 2 3 29 29 H 1.08999 * 109.46903 * 239.99736 * 2 1 3 30 30 H 1.48498 * 110.00144 * 298.68082 * 3 2 1 31 31 H 1.48504 * 110.00096 * 59.99691 * 3 2 1 32 32 H 1.07997 * 119.94812 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.97020 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.02959 * 180.27296 * 7 6 5 35 35 H 1.08993 * 109.47327 * 59.99847 * 10 9 8 36 36 H 1.09001 * 109.47011 * 299.99945 * 10 9 8 37 37 H 0.97007 * 119.99982 * 359.97438 * 13 11 10 38 38 H 1.08998 * 113.61970 * 25.51715 * 16 14 13 39 39 H 1.09007 * 113.61194 * 254.61104 * 16 14 13 40 40 H 1.09002 * 109.47158 * 301.52510 * 18 17 16 41 41 H 1.08994 * 109.47235 * 61.52799 * 18 17 16 42 42 H 0.96697 * 114.00282 * 179.97438 * 19 18 17 43 43 H 1.08005 * 119.99738 * 0.04437 * 21 20 17 44 44 H 1.08005 * 120.00439 * 180.36720 * 22 21 20 45 45 H 1.07997 * 119.99935 * 179.97438 * 23 22 21 46 46 H 1.07997 * 120.00043 * 179.97438 * 24 23 22 47 47 H 1.08002 * 120.00002 * 359.97438 * 25 20 17 48 48 H 1.09001 * 113.61276 * 105.46289 * 26 14 13 49 49 H 1.08999 * 113.61838 * 334.55444 * 26 14 13 50 50 H 1.07994 * 120.03398 * 0.04386 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6383 -0.0117 2.1912 6 6 3.1001 -0.6606 3.3217 7 6 2.8518 -2.0081 3.4958 8 6 2.1474 -2.7130 2.5302 9 8 1.9063 -4.0401 2.6969 10 6 2.4125 -4.6470 3.8874 11 6 2.0515 -6.1101 3.8979 12 8 1.4224 -6.5861 2.9768 13 7 2.4279 -6.8896 4.9309 14 6 2.0776 -8.3121 4.9409 15 1 1.8996 -8.7111 3.9423 16 6 3.0274 -9.1744 5.7888 17 6 1.7817 -9.9433 6.2601 18 6 1.4197 -11.1308 5.3657 19 8 0.2349 -11.7569 5.8619 20 6 1.8108 -10.3006 7.7238 21 6 2.8852 -10.9978 8.2439 22 6 2.9121 -11.3251 9.5866 23 6 1.8637 -10.9568 10.4090 24 6 0.7887 -10.2607 9.8887 25 6 0.7625 -9.9324 8.5461 26 6 0.9762 -8.6700 5.9526 27 6 1.6844 -2.0596 1.3976 28 1 -0.3932 0.4418 -0.7650 29 1 1.7923 -0.5139 -0.8900 30 1 1.5881 2.4585 -1.2242 31 1 1.5616 2.4679 1.2085 32 1 2.8302 1.0428 2.0587 33 1 3.6518 -0.1124 4.0710 34 1 3.2089 -2.5135 4.3810 35 1 1.9756 -4.1583 4.7583 36 1 3.4968 -4.5404 3.9168 37 1 2.9315 -6.5089 5.6675 38 1 3.5261 -8.6214 6.5846 39 1 3.7150 -9.7782 5.1963 40 1 1.2464 -10.7799 4.3484 41 1 2.2387 -11.8499 5.3675 42 1 -0.0542 -12.5194 5.3421 43 1 3.7041 -11.2858 7.6014 44 1 3.7543 -11.8646 9.9942 45 1 1.8846 -11.2128 11.4580 46 1 -0.0305 -9.9734 10.5310 47 1 -0.0773 -9.3882 8.1397 48 1 0.0078 -8.8665 5.4925 49 1 0.9141 -7.9789 6.7933 50 1 1.1324 -2.6052 0.6467 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13270510_4860298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:35:42 Heat of formation + Delta-G solvation = -63.924619 kcal Electronic energy + Delta-G solvation = -32038.039734 eV Core-core repulsion = 27577.268759 eV Total energy + Delta-G solvation = -4460.770975 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.94323 -41.38169 -40.36725 -39.15176 -38.72708 -37.43464 -37.17588 -34.89584 -32.61307 -32.06335 -31.80059 -31.47775 -29.47543 -27.98243 -26.96337 -26.78686 -24.76374 -23.66898 -23.16221 -23.02202 -22.05174 -21.56703 -19.76221 -19.19567 -18.60721 -18.44988 -18.28514 -17.92284 -17.47469 -17.39459 -17.15258 -16.74412 -16.15041 -16.01883 -15.86838 -15.78542 -15.56719 -15.43558 -15.36373 -14.84230 -14.54403 -14.37993 -14.26929 -14.14033 -13.78109 -13.73871 -13.65791 -13.45640 -13.35639 -13.31203 -13.08097 -12.53529 -12.47264 -12.28227 -12.13356 -12.09418 -11.99826 -11.70536 -11.52317 -11.35833 -11.03140 -10.83582 -10.55732 -10.17357 -9.92505 -9.78025 -9.56470 -9.29309 -4.92303 0.19557 0.38494 0.49070 0.53906 1.26118 1.38985 1.48551 1.61532 1.94219 2.57130 2.63011 2.89798 3.02876 3.28980 3.37647 3.49629 3.64485 3.67573 3.78835 3.82774 3.87857 4.00013 4.02744 4.07934 4.12543 4.17627 4.18319 4.24930 4.26438 4.31121 4.39861 4.47957 4.48604 4.53111 4.64238 4.65127 4.69682 4.75679 4.77889 4.96469 4.97050 4.97566 5.03645 5.17884 5.19063 5.22683 5.35756 5.42794 5.46021 5.62407 5.66814 5.67895 5.73555 6.15062 6.26116 6.44563 6.54962 6.84917 7.08880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.098 4.098 3 Si 0.783 3.217 4 C -0.047 4.047 5 C -0.161 4.161 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.114 3.886 9 O -0.322 6.322 10 C 0.037 3.963 11 C 0.514 3.486 12 O -0.573 6.573 13 N -0.698 5.698 14 C 0.122 3.878 15 H 0.100 0.900 16 C -0.111 4.111 17 C -0.041 4.041 18 C 0.098 3.902 19 O -0.587 6.587 20 C -0.055 4.055 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.137 4.137 27 C -0.150 4.150 28 H 0.395 0.605 29 H 0.090 0.910 30 H -0.287 1.287 31 H -0.293 1.293 32 H 0.145 0.855 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.422 0.578 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.395 0.605 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.116 0.884 48 H 0.058 0.942 49 H 0.095 0.905 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.411 1.061 3.568 9.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.206 4.206 3 Si 0.687 3.313 4 C -0.048 4.048 5 C -0.178 4.178 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.236 6.236 10 C -0.041 4.041 11 C 0.300 3.700 12 O -0.452 6.452 13 N -0.351 5.351 14 C 0.017 3.983 15 H 0.118 0.882 16 C -0.149 4.149 17 C -0.042 4.042 18 C 0.020 3.980 19 O -0.395 6.395 20 C -0.055 4.055 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.175 4.175 27 C -0.169 4.169 28 H 0.245 0.755 29 H 0.108 0.892 30 H -0.214 1.214 31 H -0.220 1.220 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.260 0.740 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.244 0.756 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.134 0.866 48 H 0.077 0.923 49 H 0.114 0.886 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.798 1.563 3.761 8.797 hybrid contribution -1.602 -0.727 -0.684 1.887 sum 6.196 0.836 3.077 6.969 Atomic orbital electron populations 1.86558 1.18669 1.80885 1.50963 1.25257 0.84084 1.12923 0.98303 0.93929 0.90015 0.70906 0.76471 1.19263 0.97271 0.92447 0.95786 1.21209 1.01199 1.00593 0.94812 1.21320 0.96891 0.93613 0.96964 1.21640 1.03625 0.96290 1.00468 1.19172 0.96275 0.82371 0.95316 1.86118 1.74705 1.20736 1.42030 1.22751 1.02786 0.90069 0.88500 1.20585 0.78701 0.88630 0.82064 1.90758 1.40900 1.75924 1.37572 1.45649 1.57295 1.09209 1.22950 1.22491 0.96532 0.79986 0.99276 0.88247 1.23390 0.95330 0.96739 0.99412 1.20556 0.98308 0.93673 0.91657 1.21995 0.87637 0.93293 0.95086 1.86468 1.44723 1.50000 1.58276 1.19445 0.94355 0.97870 0.93802 1.21161 0.98551 0.98651 0.95678 1.21407 0.99111 1.00028 0.94022 1.21407 0.94415 0.98910 1.00727 1.21365 0.98985 0.99070 0.95626 1.21092 0.98217 1.00674 0.93773 1.23538 0.98095 0.96535 0.99375 1.20305 1.04001 0.94599 0.97988 0.75490 0.89241 1.21405 1.22045 0.83768 0.81808 0.81940 0.85982 0.85273 0.73977 0.87002 0.88595 0.92673 0.91831 0.75578 0.84727 0.84600 0.85010 0.85415 0.86623 0.92270 0.88615 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.23 12.81 -148.98 -1.91 -5.13 16 2 C -0.10 -0.23 2.79 71.24 0.20 -0.03 16 3 Si 0.78 -1.13 29.85 68.60 2.05 0.92 16 4 C -0.05 -0.24 5.38 -19.88 -0.11 -0.35 16 5 C -0.16 -0.15 8.67 22.28 0.19 0.04 16 6 C -0.07 0.15 10.04 22.26 0.22 0.37 16 7 C -0.20 0.21 9.04 22.37 0.20 0.41 16 8 C 0.11 0.69 6.69 22.51 0.15 0.84 16 9 O -0.32 -2.65 9.67 -73.43 -0.71 -3.36 16 10 C 0.04 -0.07 5.22 71.24 0.37 0.30 16 11 C 0.51 1.82 7.91 87.66 0.69 2.51 16 12 O -0.57 -8.86 16.10 16.02 0.26 -8.60 16 13 N -0.70 2.68 5.36 -440.05 -2.36 0.32 16 14 C 0.12 -0.20 3.89 45.51 0.18 -0.03 16 15 H 0.10 0.29 6.96 -2.39 -0.02 0.27 16 16 C -0.11 0.68 6.63 31.12 0.21 0.88 16 17 C -0.04 0.06 0.88 -52.40 -0.05 0.02 16 18 C 0.10 -0.12 6.37 71.98 0.46 0.34 16 19 O -0.59 -1.30 13.17 -148.98 -1.96 -3.26 16 20 C -0.05 -0.07 4.36 -19.87 -0.09 -0.16 16 21 C -0.12 -0.02 9.39 22.27 0.21 0.19 16 22 C -0.13 -0.09 10.05 22.27 0.22 0.14 16 23 C -0.14 -0.25 10.05 22.27 0.22 -0.02 16 24 C -0.13 -0.40 10.05 22.27 0.22 -0.17 16 25 C -0.12 -0.43 9.02 22.27 0.20 -0.23 16 26 C -0.14 0.00 5.99 31.12 0.19 0.19 16 27 C -0.15 -1.31 9.62 22.37 0.22 -1.09 16 28 H 0.39 -1.10 8.74 -74.06 -0.65 -1.75 16 29 H 0.09 -0.07 7.96 -2.39 -0.02 -0.09 16 30 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 31 H -0.29 -1.41 7.05 99.48 0.70 -0.71 16 32 H 0.15 -0.43 4.86 -2.91 -0.01 -0.45 16 33 H 0.16 -1.44 8.06 -2.91 -0.02 -1.47 16 34 H 0.16 -1.39 6.30 -2.91 -0.02 -1.41 16 35 H 0.12 -0.96 7.65 -2.39 -0.02 -0.98 16 36 H 0.13 -1.19 7.67 -2.39 -0.02 -1.20 16 37 H 0.42 -4.82 8.73 -92.70 -0.81 -5.63 16 38 H 0.11 -0.97 8.07 -2.39 -0.02 -0.99 16 39 H 0.10 -0.78 8.10 -2.38 -0.02 -0.80 16 40 H 0.06 -0.10 7.34 -2.39 -0.02 -0.12 16 41 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.39 -2.18 9.12 -74.06 -0.68 -2.85 16 43 H 0.13 -0.51 8.03 -2.91 -0.02 -0.54 16 44 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 45 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 46 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 47 H 0.12 0.41 7.01 -2.91 -0.02 0.39 16 48 H 0.06 0.26 8.10 -2.39 -0.02 0.24 16 49 H 0.10 -0.10 7.43 -2.39 -0.02 -0.12 16 50 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 Total: 0.00 -31.26 413.66 -1.62 -32.88 By element: Atomic # 1 Polarization: -16.81 SS G_CDS: -1.10 Total: -17.92 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 4.12 Total: 4.15 kcal Atomic # 7 Polarization: 2.68 SS G_CDS: -2.36 Total: 0.32 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -4.32 Total: -20.35 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.05 Total: 0.92 kcal Total: -31.26 -1.62 -32.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13270510_4860298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.049 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds