Wall clock time and date at job start Sat Mar 6 2021 21:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20761 * 119.99996 * 2 1 4 4 C 1.50702 * 120.00303 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.47108 * 330.00221 * 4 2 1 6 6 C 1.52996 * 109.47261 * 89.99943 * 4 2 1 7 7 C 1.52994 * 109.47386 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47449 * 300.00168 * 7 6 4 9 9 H 1.09003 * 109.46903 * 300.00159 * 8 7 6 10 10 N 1.46493 * 109.47638 * 179.97438 * 8 7 6 11 11 C 1.34784 * 119.99864 * 84.99998 * 10 8 7 12 12 O 1.21597 * 119.99613 * 359.72388 * 11 10 8 13 13 C 1.47520 * 119.99967 * 179.72956 * 11 10 8 14 14 C 1.39776 * 120.06775 * 179.72575 * 13 11 10 15 15 C 1.37625 * 119.92966 * 179.76151 * 14 13 11 16 16 C 1.50700 * 119.96673 * 180.27370 * 15 14 13 17 17 O 1.42898 * 109.47515 * 105.21328 * 16 15 14 18 18 Si 1.86304 * 109.46876 * 345.21426 * 16 15 14 19 19 C 1.39193 * 120.07089 * 0.49112 * 15 14 13 20 20 N 1.39053 * 119.93286 * 179.76161 * 19 15 14 21 21 C 1.46902 * 110.99604 * 120.02118 * 20 19 15 22 22 C 1.46896 * 110.99847 * 243.97353 * 20 19 15 23 23 C 1.39243 * 120.13637 * 359.78129 * 19 15 14 24 24 C 1.37586 * 120.06723 * 359.95917 * 23 19 15 25 25 C 1.53006 * 109.46809 * 59.99578 * 8 7 6 26 26 C 1.52994 * 109.47460 * 300.00415 * 25 8 7 27 27 H 1.09004 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47292 * 300.00089 * 1 2 3 29 29 H 1.08999 * 109.46831 * 60.00576 * 1 2 3 30 30 H 1.09003 * 109.47419 * 300.00597 * 6 4 2 31 31 H 1.09003 * 109.46833 * 60.00109 * 6 4 2 32 32 H 1.09003 * 109.47448 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47197 * 60.00146 * 7 6 4 34 34 H 0.97000 * 120.00740 * 264.72691 * 10 8 7 35 35 H 1.08009 * 120.03377 * 0.02562 * 14 13 11 36 36 H 1.09000 * 109.47388 * 225.21861 * 16 15 14 37 37 H 0.96695 * 114.00174 * 179.97438 * 17 16 15 38 38 H 1.48500 * 110.00207 * 60.00382 * 18 16 15 39 39 H 1.48505 * 109.99990 * 181.31925 * 18 16 15 40 40 H 1.08993 * 109.47612 * 60.00454 * 21 20 19 41 41 H 1.09010 * 109.46527 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.46995 * 299.99736 * 21 20 19 43 43 H 1.09002 * 109.47561 * 60.00285 * 22 20 19 44 44 H 1.08999 * 109.47144 * 179.97438 * 22 20 19 45 45 H 1.09003 * 109.47529 * 300.00147 * 22 20 19 46 46 H 1.08004 * 119.96461 * 179.97438 * 23 19 15 47 47 H 1.07999 * 120.03324 * 179.97438 * 24 23 19 48 48 H 1.09003 * 109.46914 * 60.00587 * 25 8 7 49 49 H 1.09004 * 109.46741 * 180.02562 * 25 8 7 50 50 H 1.09003 * 109.47448 * 180.02562 * 26 25 8 51 51 H 1.09003 * 109.47197 * 299.99998 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 0.0006 5 1 1.6715 -2.0646 0.5147 6 6 2.5156 -1.7474 -1.4417 7 6 3.2801 -3.0727 -1.4411 8 6 4.6169 -2.8900 -0.7198 9 1 5.2063 -2.1308 -1.2338 10 7 5.3487 -4.1591 -0.7187 11 6 6.1129 -4.4973 -1.7762 12 8 6.1909 -3.7512 -2.7332 13 6 6.8545 -5.7725 -1.7726 14 6 7.6429 -6.1273 -2.8709 15 6 8.3375 -7.3153 -2.8625 16 6 9.1926 -7.6958 -4.0436 17 8 10.5709 -7.5180 -3.7108 18 14 8.7602 -6.6138 -5.4973 19 6 8.2474 -8.1681 -1.7660 20 7 8.9465 -9.3701 -1.7626 21 6 9.8923 -9.4258 -0.6399 22 6 8.0259 -10.5144 -1.7327 23 6 7.4584 -7.8202 -0.6727 24 6 6.7658 -6.6313 -0.6729 25 6 4.3618 -2.4477 0.7226 26 6 3.5974 -1.1224 0.7220 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.5632 -1.8780 -1.9555 31 1 3.1046 -0.9879 -1.9558 32 1 3.4622 -3.3876 -2.4687 33 1 2.6906 -3.8319 -0.9271 34 1 5.2865 -4.7543 0.0447 35 1 7.7103 -5.4677 -3.7236 36 1 9.0127 -8.7395 -4.3013 37 1 11.1806 -7.7449 -4.4262 38 1 9.0012 -5.1881 -5.1589 39 1 9.5742 -7.0001 -6.6778 40 1 9.3469 -9.3361 0.2995 41 1 10.4260 -10.3760 -0.6613 42 1 10.6061 -8.6065 -0.7253 43 1 7.3829 -10.4866 -2.6125 44 1 8.5988 -11.4417 -1.7311 45 1 7.4128 -10.4641 -0.8329 46 1 7.3902 -8.4841 0.1764 47 1 6.1537 -6.3622 0.1751 48 1 3.7724 -3.2070 1.2366 49 1 5.3143 -2.3171 1.2364 50 1 3.4160 -0.8071 1.7496 51 1 4.1868 -0.3632 0.2080 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13287736_13422196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:21:18 Heat of formation + Delta-G solvation = -68.191455 kcal Electronic energy + Delta-G solvation = -30849.233958 eV Core-core repulsion = 26715.137424 eV Total energy + Delta-G solvation = -4134.096534 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.78632 -41.13583 -40.40944 -38.62799 -37.84012 -37.25551 -35.41901 -33.10062 -32.11512 -31.78036 -31.16818 -29.72913 -28.49899 -26.90777 -26.23990 -24.29851 -23.83184 -23.02862 -22.71902 -21.42603 -20.97305 -20.26916 -18.89160 -18.50679 -17.83493 -17.61580 -17.09672 -16.64384 -16.53311 -16.31766 -16.04364 -15.96656 -15.85960 -15.61325 -15.16328 -15.08618 -15.01621 -14.73223 -14.61418 -14.23552 -14.03777 -13.81040 -13.64193 -13.52269 -13.32766 -13.28334 -13.20579 -13.03347 -12.95143 -12.72027 -12.63175 -12.60312 -12.28871 -12.17008 -12.10710 -11.94236 -11.53747 -11.35872 -11.13892 -10.44625 -10.41544 -10.21244 -10.10595 -9.76708 -9.47753 -5.01197 -0.37042 0.15392 0.96727 1.25043 1.49601 1.65192 1.88669 2.00681 2.61380 2.81721 3.07618 3.38401 3.56590 3.63969 3.65723 3.75460 3.79992 3.94727 4.06275 4.06640 4.15285 4.15754 4.25308 4.32065 4.33791 4.40323 4.42943 4.46350 4.47352 4.49601 4.61973 4.63572 4.66748 4.68879 4.69573 4.80259 4.81724 4.97452 4.99775 5.02175 5.03100 5.06537 5.09079 5.12918 5.15367 5.22616 5.25506 5.27205 5.32029 5.46014 5.57272 5.89150 6.29838 6.45788 6.56444 6.63514 7.12897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.358 3.642 3 O -0.508 6.508 4 C -0.134 4.134 5 H 0.135 0.865 6 C -0.101 4.101 7 C -0.119 4.119 8 C 0.142 3.858 9 H 0.055 0.945 10 N -0.704 5.704 11 C 0.558 3.442 12 O -0.581 6.581 13 C -0.149 4.149 14 C -0.069 4.069 15 C -0.076 4.076 16 C -0.048 4.048 17 O -0.546 6.546 18 Si 0.729 3.271 19 C 0.139 3.861 20 N -0.522 5.522 21 C 0.032 3.968 22 C 0.025 3.975 23 C -0.156 4.156 24 C -0.054 4.054 25 C -0.114 4.114 26 C -0.107 4.107 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.416 0.584 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.391 0.609 38 H -0.311 1.311 39 H -0.276 1.276 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.154 0.846 47 H 0.165 0.835 48 H 0.103 0.897 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 -9.505 5.510 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.237 3.763 3 O -0.385 6.385 4 C -0.153 4.153 5 H 0.153 0.847 6 C -0.139 4.139 7 C -0.157 4.157 8 C 0.037 3.963 9 H 0.074 0.926 10 N -0.356 5.356 11 C 0.346 3.654 12 O -0.462 6.462 13 C -0.153 4.153 14 C -0.088 4.088 15 C -0.077 4.077 16 C -0.159 4.159 17 O -0.355 6.355 18 Si 0.636 3.364 19 C 0.044 3.956 20 N -0.243 5.243 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.176 4.176 24 C -0.073 4.073 25 C -0.152 4.152 26 C -0.145 4.145 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.241 0.759 38 H -0.240 1.240 39 H -0.202 1.202 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.171 0.829 47 H 0.182 0.818 48 H 0.121 0.879 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.583 -7.735 4.397 10.504 hybrid contribution 1.142 0.151 0.571 1.286 sum -4.441 -7.585 4.968 10.096 Atomic orbital electron populations 1.22353 0.92051 1.06715 1.05007 1.25302 0.93409 0.89857 0.67712 1.90423 1.73192 1.37014 1.37883 1.21922 0.97704 0.97155 0.98509 0.84735 1.21350 1.01424 0.96801 0.94314 1.21831 0.95252 0.97891 1.00765 1.21044 0.92542 0.84866 0.97825 0.92637 1.45813 1.47348 1.22450 1.20007 1.18426 0.78671 0.85734 0.82557 1.90797 1.65593 1.53726 1.36073 1.19825 1.02413 0.95883 0.97129 1.21132 0.94681 0.95025 0.97997 1.19217 0.98301 0.93858 0.96308 1.24487 0.83177 1.06835 1.01394 1.86540 1.15327 1.90246 1.43413 0.94553 0.90491 0.75967 0.75355 1.18953 0.92676 0.91501 0.92433 1.59360 1.18346 1.00548 1.46022 1.22431 0.95297 1.03329 0.90336 1.22562 0.95502 0.92202 1.01870 1.21871 0.98064 0.98202 0.99424 1.21453 0.96921 0.92318 0.96608 1.21739 1.01647 0.97796 0.93987 1.21378 0.95013 0.97209 1.00889 0.87007 0.88571 0.89008 0.89072 0.93822 0.92922 0.88536 0.74480 0.85870 0.88498 0.75883 1.24001 1.20194 0.93871 0.89707 0.92565 0.90832 0.89745 0.93867 0.82879 0.81787 0.87882 0.90758 0.90542 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 1.21 10.32 71.24 0.74 1.95 16 2 C 0.36 0.22 6.32 29.10 0.18 0.40 16 3 O -0.51 -5.53 16.92 -1.45 -0.02 -5.56 16 4 C -0.13 0.57 2.40 -11.54 -0.03 0.54 16 5 H 0.13 -1.49 8.05 -2.39 -0.02 -1.51 16 6 C -0.10 0.23 5.19 30.59 0.16 0.39 16 7 C -0.12 0.27 5.49 30.59 0.17 0.44 16 8 C 0.14 -0.06 2.45 44.99 0.11 0.05 16 9 H 0.06 0.41 7.58 -2.39 -0.02 0.39 16 10 N -0.70 1.15 5.03 -445.70 -2.24 -1.09 16 11 C 0.56 3.62 7.73 86.69 0.67 4.29 16 12 O -0.58 -9.36 16.00 -4.02 -0.06 -9.42 16 13 C -0.15 -0.55 5.88 -20.08 -0.12 -0.67 16 14 C -0.07 -0.49 8.19 22.50 0.18 -0.30 16 15 C -0.08 -0.36 5.31 -19.78 -0.10 -0.46 16 16 C -0.05 -0.15 2.32 71.24 0.17 0.01 16 17 O -0.55 -2.80 12.86 -148.98 -1.92 -4.72 16 18 Si 0.73 2.95 30.19 68.60 2.07 5.02 16 19 C 0.14 0.20 4.70 38.47 0.18 0.38 16 20 N -0.52 0.17 4.20 -745.10 -3.13 -2.96 16 21 C 0.03 -0.06 9.34 127.69 1.19 1.13 16 22 C 0.02 -0.12 9.38 127.69 1.20 1.08 16 23 C -0.16 0.45 8.53 22.36 0.19 0.64 16 24 C -0.05 0.19 9.53 22.50 0.21 0.41 16 25 C -0.11 0.62 5.39 30.59 0.16 0.79 16 26 C -0.11 0.18 4.80 30.59 0.15 0.33 16 27 H 0.11 -1.32 7.94 -2.38 -0.02 -1.34 16 28 H 0.10 -0.59 8.14 -2.39 -0.02 -0.60 16 29 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.04 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.42 -3.82 6.62 -92.71 -0.61 -4.43 16 35 H 0.12 1.30 4.46 -2.91 -0.01 1.29 16 36 H 0.10 -0.01 7.77 -2.39 -0.02 -0.03 16 37 H 0.39 -0.96 8.74 -74.06 -0.65 -1.61 16 38 H -0.31 -4.31 6.75 99.48 0.67 -3.64 16 39 H -0.28 -1.79 7.11 99.48 0.71 -1.08 16 40 H 0.04 -0.19 7.10 -2.39 -0.02 -0.21 16 41 H 0.08 -0.33 8.12 -2.38 -0.02 -0.35 16 42 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.08 -0.53 8.12 -2.39 -0.02 -0.54 16 45 H 0.04 -0.29 7.32 -2.39 -0.02 -0.31 16 46 H 0.15 -1.16 6.99 -2.91 -0.02 -1.19 16 47 H 0.16 -1.89 6.39 -2.91 -0.02 -1.91 16 48 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 49 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 50 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 51 H 0.05 0.22 7.86 -2.39 -0.02 0.20 16 Total: 0.00 -27.49 404.93 -0.21 -27.70 By element: Atomic # 1 Polarization: -20.07 SS G_CDS: -0.31 Total: -20.38 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.41 Total: 11.40 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -5.37 Total: -4.05 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -2.00 Total: -19.70 kcal Atomic # 14 Polarization: 2.95 SS G_CDS: 2.07 Total: 5.02 kcal Total: -27.49 -0.21 -27.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13287736_13422196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.491 kcal (2) G-P(sol) polarization free energy of solvation -27.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds