Wall clock time and date at job start Sat Mar 6 2021 21:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20751 * 120.00136 * 2 1 4 4 C 1.50699 * 120.00057 * 180.02562 * 2 1 3 5 5 H 1.09009 * 109.47152 * 329.99624 * 4 2 1 6 6 C 1.52993 * 109.47567 * 89.99536 * 4 2 1 7 7 C 1.53000 * 109.47512 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.46898 * 299.99835 * 7 6 4 9 9 H 1.09002 * 109.47544 * 299.99985 * 8 7 6 10 10 N 1.46499 * 109.47258 * 179.97438 * 8 7 6 11 11 C 1.34784 * 119.99893 * 85.00288 * 10 8 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 8 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 8 14 14 C 1.53543 * 109.82610 * 80.00093 * 13 11 10 15 15 C 1.53037 * 108.56323 * 180.48775 * 14 13 11 16 16 C 1.50209 * 110.31525 * 310.42569 * 15 14 13 17 17 C 1.50697 * 118.54543 * 200.07758 * 16 15 14 18 18 O 1.42902 * 109.47086 * 299.99784 * 17 16 15 19 19 Si 1.86303 * 109.46884 * 180.02562 * 17 16 15 20 20 C 1.31113 * 122.90620 * 20.05378 * 16 15 14 21 21 N 1.38922 * 121.84945 * 359.59149 * 20 16 15 22 22 C 1.53004 * 109.46864 * 60.00173 * 8 7 6 23 23 C 1.52997 * 109.47185 * 210.00045 * 4 2 1 24 24 H 1.08999 * 109.47370 * 239.99770 * 1 2 3 25 25 H 1.09001 * 109.47238 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47252 * 119.99637 * 1 2 3 27 27 H 1.09008 * 109.47625 * 300.00234 * 6 4 2 28 28 H 1.08997 * 109.47189 * 59.99979 * 6 4 2 29 29 H 1.09003 * 109.47050 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47010 * 60.00146 * 7 6 4 31 31 H 0.97005 * 120.00261 * 265.00500 * 10 8 7 32 32 H 1.08998 * 109.81322 * 319.13103 * 13 11 10 33 33 H 1.08997 * 109.61708 * 300.20620 * 14 13 11 34 34 H 1.08999 * 109.61710 * 60.76156 * 14 13 11 35 35 H 1.08997 * 109.33152 * 70.68374 * 15 14 13 36 36 H 1.08996 * 109.33074 * 190.17055 * 15 14 13 37 37 H 1.08991 * 109.47488 * 59.99590 * 17 16 15 38 38 H 0.96704 * 114.00201 * 300.00486 * 18 17 16 39 39 H 1.48497 * 110.00166 * 58.68146 * 19 17 16 40 40 H 1.48508 * 109.99561 * 179.97438 * 19 17 16 41 41 H 1.08000 * 119.07784 * 179.61975 * 20 16 15 42 42 H 0.96999 * 120.56098 * 193.33438 * 21 20 16 43 43 H 1.08997 * 109.47519 * 59.99913 * 22 8 7 44 44 H 1.09009 * 109.47062 * 179.97438 * 22 8 7 45 45 H 1.08994 * 109.47626 * 59.99799 * 23 4 2 46 46 H 1.09002 * 109.47045 * 299.99582 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.6714 -2.0650 0.5130 6 6 2.5154 -1.7462 -1.4432 7 6 3.2799 -3.0716 -1.4438 8 6 4.6168 -2.8895 -0.7224 9 1 5.2062 -2.1298 -1.2358 10 7 5.3485 -4.1586 -0.7224 11 6 6.1127 -4.4959 -1.7802 12 8 6.1948 -3.7485 -2.7318 13 6 6.8702 -5.7986 -1.7775 14 6 5.9256 -6.9512 -2.1474 15 6 6.7201 -8.2589 -2.1241 16 6 7.9887 -8.1125 -2.9149 17 6 8.6792 -9.3588 -3.4058 18 8 9.0382 -10.1756 -2.2895 19 14 10.2151 -8.8873 -4.3489 20 6 8.5217 -6.9484 -3.1974 21 7 7.9385 -5.7562 -2.7870 22 6 4.3618 -2.4484 0.7203 23 6 3.5973 -1.1225 0.7207 24 1 -0.3634 -0.5139 0.8899 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.5630 -1.8764 -1.9572 28 1 3.1045 -0.9864 -1.9568 29 1 3.4619 -3.3856 -2.4716 30 1 2.6904 -3.8312 -0.9303 31 1 5.2831 -4.7562 0.0389 32 1 7.2994 -5.9745 -0.7911 33 1 5.1121 -7.0042 -1.4238 34 1 5.5208 -6.7864 -3.1459 35 1 6.9651 -8.5140 -1.0931 36 1 6.1155 -9.0561 -2.5564 37 1 8.0065 -9.9132 -4.0601 38 1 9.6369 -9.7453 -1.6637 39 1 11.1264 -8.1038 -3.4765 40 1 10.9056 -10.1078 -4.8379 41 1 9.4396 -6.9153 -3.7655 42 1 8.2309 -4.9099 -3.1602 43 1 3.7724 -3.2080 1.2338 44 1 5.3143 -2.3190 1.2345 45 1 3.4158 -0.8083 1.7485 46 1 4.1865 -0.3626 0.2072 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13287736_15413834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:21:32 Heat of formation + Delta-G solvation = -98.796335 kcal Electronic energy + Delta-G solvation = -25965.449757 eV Core-core repulsion = 22242.015996 eV Total energy + Delta-G solvation = -3723.433762 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62696 -40.92722 -39.70649 -38.53913 -37.43265 -35.36759 -33.18072 -33.15493 -32.03460 -31.59662 -29.92406 -27.42447 -25.41360 -24.38200 -23.83199 -23.45069 -21.59485 -21.33567 -20.28725 -19.36149 -19.08615 -18.05075 -17.51384 -17.08771 -16.83597 -16.39391 -16.30658 -16.02951 -15.99072 -15.75541 -15.25812 -15.21207 -14.99343 -14.73713 -14.45720 -14.23325 -14.09772 -13.95068 -13.49907 -13.34139 -13.20548 -12.99993 -12.96957 -12.88644 -12.61730 -12.38404 -12.28533 -12.17452 -11.94952 -11.69569 -11.54445 -11.35437 -11.25019 -10.90044 -10.45079 -10.31358 -10.12797 -8.44730 -4.90047 0.97442 1.31107 1.43142 1.50554 1.57643 1.89627 1.98808 2.64636 3.07211 3.51622 3.56632 3.62618 3.64180 3.80289 3.89036 3.95313 4.05336 4.07008 4.14860 4.29877 4.33037 4.33366 4.41490 4.45759 4.48609 4.63328 4.64238 4.66656 4.68647 4.73958 4.79658 4.80696 4.97774 5.01981 5.04815 5.08595 5.12676 5.22004 5.25400 5.27277 5.31237 5.33330 5.46951 5.58613 6.25637 6.48287 6.56200 6.65244 6.82872 7.13775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.357 3.643 3 O -0.507 6.507 4 C -0.134 4.134 5 H 0.133 0.867 6 C -0.101 4.101 7 C -0.119 4.119 8 C 0.144 3.856 9 H 0.057 0.943 10 N -0.707 5.707 11 C 0.513 3.487 12 O -0.573 6.573 13 C 0.138 3.862 14 C -0.119 4.119 15 C -0.050 4.050 16 C -0.285 4.285 17 C -0.053 4.053 18 O -0.555 6.555 19 Si 0.739 3.261 20 C 0.141 3.859 21 N -0.738 5.738 22 C -0.114 4.114 23 C -0.107 4.107 24 H 0.118 0.882 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.419 0.581 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.382 0.618 39 H -0.286 1.286 40 H -0.311 1.311 41 H 0.142 0.858 42 H 0.407 0.593 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 -2.633 3.961 6.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.235 3.765 3 O -0.384 6.384 4 C -0.152 4.152 5 H 0.151 0.849 6 C -0.140 4.140 7 C -0.157 4.157 8 C 0.039 3.961 9 H 0.075 0.925 10 N -0.359 5.359 11 C 0.299 3.701 12 O -0.452 6.452 13 C 0.029 3.971 14 C -0.158 4.158 15 C -0.087 4.087 16 C -0.296 4.296 17 C -0.164 4.164 18 O -0.362 6.362 19 Si 0.647 3.353 20 C 0.020 3.980 21 N -0.371 5.371 22 C -0.152 4.152 23 C -0.145 4.145 24 H 0.136 0.864 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.256 0.744 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.231 0.769 39 H -0.213 1.213 40 H -0.240 1.240 41 H 0.158 0.842 42 H 0.243 0.757 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.294 -2.036 3.049 5.646 hybrid contribution 0.619 0.099 0.999 1.180 sum -3.674 -1.938 4.048 5.800 Atomic orbital electron populations 1.22407 0.92143 1.05022 1.06653 1.25285 0.93396 0.89903 0.67869 1.90423 1.73250 1.36956 1.37781 1.21866 0.97718 0.97073 0.98579 0.84926 1.21366 1.01430 0.96923 0.94235 1.21823 0.95472 0.97752 1.00665 1.20987 0.92428 0.85117 0.97535 0.92463 1.45888 1.47506 1.22146 1.20319 1.20875 0.79278 0.87627 0.82317 1.90729 1.64983 1.53638 1.35861 1.21108 0.89248 0.92245 0.94507 1.21831 0.97533 0.93415 1.02990 1.19908 0.92924 0.96366 0.99520 1.20932 1.01717 0.93399 1.13513 1.24810 1.06526 0.92694 0.92335 1.86536 1.68707 1.44270 1.36718 0.94623 0.76121 0.79584 0.84978 1.20486 0.95664 0.85558 0.96246 1.44403 1.39690 1.07167 1.45802 1.21739 1.01616 0.97618 0.94209 1.21384 0.94972 0.97340 1.00806 0.86408 0.91307 0.86849 0.89267 0.93724 0.92992 0.88769 0.74356 0.87408 0.88039 0.92088 0.91148 0.91062 0.87119 0.76892 1.21341 1.24025 0.84151 0.75682 0.88160 0.90675 0.90716 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 1.33 10.24 71.24 0.73 2.06 16 2 C 0.36 -0.07 6.32 29.10 0.18 0.12 16 3 O -0.51 -5.13 16.90 -1.42 -0.02 -5.15 16 4 C -0.13 0.72 2.46 -11.54 -0.03 0.69 16 5 H 0.13 -1.57 8.12 -2.38 -0.02 -1.59 16 6 C -0.10 0.39 5.18 30.59 0.16 0.54 16 7 C -0.12 0.52 5.49 30.59 0.17 0.69 16 8 C 0.14 -0.48 2.45 44.99 0.11 -0.37 16 9 H 0.06 0.23 7.58 -2.39 -0.02 0.21 16 10 N -0.71 4.08 5.08 -442.53 -2.25 1.83 16 11 C 0.51 0.07 7.06 87.65 0.62 0.69 16 12 O -0.57 -5.35 15.72 -3.04 -0.05 -5.40 16 13 C 0.14 -0.44 3.36 44.32 0.15 -0.30 16 14 C -0.12 0.51 5.47 30.79 0.17 0.68 16 15 C -0.05 0.12 5.75 29.71 0.17 0.29 16 16 C -0.29 0.23 5.44 -16.75 -0.09 0.14 16 17 C -0.05 -0.01 2.83 71.23 0.20 0.19 16 18 O -0.55 -1.71 12.78 -148.98 -1.90 -3.62 16 19 Si 0.74 -0.18 29.68 68.60 2.04 1.85 16 20 C 0.14 -0.16 9.63 83.42 0.80 0.64 16 21 N -0.74 0.25 5.47 -329.00 -1.80 -1.55 16 22 C -0.11 0.83 5.39 30.61 0.17 1.00 16 23 C -0.11 0.33 4.80 30.61 0.15 0.47 16 24 H 0.12 -1.31 8.14 -2.39 -0.02 -1.33 16 25 H 0.07 -0.21 8.12 -2.39 -0.02 -0.23 16 26 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 27 H 0.09 -0.60 8.14 -2.38 -0.02 -0.62 16 28 H 0.04 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.42 -5.19 8.60 -92.70 -0.80 -5.99 16 32 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.06 -0.02 8.14 -2.39 -0.02 -0.03 16 35 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 38 H 0.38 -0.98 8.70 -74.05 -0.64 -1.62 16 39 H -0.29 -0.97 7.10 99.48 0.71 -0.26 16 40 H -0.31 -2.60 7.11 99.48 0.71 -1.89 16 41 H 0.14 -0.51 4.36 -2.91 -0.01 -0.53 16 42 H 0.41 0.36 8.08 -92.71 -0.75 -0.39 16 43 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 44 H 0.07 -0.51 8.14 -2.38 -0.02 -0.53 16 45 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.05 0.15 7.86 -2.39 -0.02 0.13 16 Total: 0.00 -23.30 365.10 -1.49 -24.78 By element: Atomic # 1 Polarization: -19.12 SS G_CDS: -1.16 Total: -20.28 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 3.66 Total: 7.54 kcal Atomic # 7 Polarization: 4.32 SS G_CDS: -4.05 Total: 0.28 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.98 Total: -14.17 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.04 Total: 1.85 kcal Total: -23.30 -1.49 -24.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13287736_15413834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.014 kcal (2) G-P(sol) polarization free energy of solvation -23.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds