Wall clock time and date at job start Sun Mar 7 2021 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21685 * 120.00354 * 0.02562 * 13 12 11 15 15 C 1.46685 * 119.99207 * 180.02562 * 13 12 11 16 16 C 1.37869 * 126.22779 * 179.72072 * 15 13 12 17 17 C 1.39833 * 107.08388 * 179.85152 * 16 15 13 18 18 C 1.50708 * 126.06668 * 180.13876 * 17 16 15 19 19 O 1.42906 * 109.47049 * 65.30039 * 18 17 16 20 20 Si 1.86303 * 109.46862 * 185.29804 * 18 17 16 21 21 H 1.48507 * 109.46805 * 60.00105 * 20 18 17 22 22 H 1.48504 * 109.46795 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47330 * 300.00243 * 20 18 17 24 24 C 1.35448 * 107.86471 * 0.41354 * 17 16 15 25 25 N 1.35532 * 108.87027 * 359.74233 * 24 17 16 26 26 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 27 27 C 1.37976 * 120.14217 * 0.02562 * 26 10 9 28 28 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 30 30 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 33 33 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 34 34 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 35 35 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 36 36 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 37 37 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 39 39 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 40 40 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 41 41 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 42 42 H 1.08003 * 126.45665 * 359.96151 * 16 15 13 43 43 H 1.08996 * 109.46927 * 305.30086 * 18 17 16 44 44 H 0.96700 * 113.99523 * 60.00225 * 19 18 17 45 45 H 1.08004 * 125.56584 * 179.78045 * 24 17 16 46 46 H 0.97005 * 125.67461 * 180.02562 * 25 24 17 47 47 H 1.07999 * 119.93193 * 179.97438 * 26 10 9 48 48 H 1.08003 * 120.07184 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0668 -5.7504 9.3168 15 6 3.0289 -6.8604 9.1366 16 6 3.1371 -7.7029 10.2225 17 6 1.9635 -8.4615 10.2724 18 6 1.6318 -9.5165 11.2962 19 8 1.5010 -8.9077 12.5824 20 14 0.0284 -10.3461 10.8359 21 1 0.1644 -10.9788 9.4992 22 1 -0.2981 -11.3861 11.8444 23 1 -1.0586 -9.3352 10.7967 24 6 1.1804 -8.0841 9.2337 25 7 1.8164 -7.1118 8.5358 26 6 3.5437 -2.2708 6.0695 27 6 3.0807 -1.6156 4.9469 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7566 0.0005 32 1 2.1205 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9058 -1.5212 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8777 -1.5214 37 1 4.3313 -3.6977 2.5772 38 1 5.1551 -4.8441 4.5914 39 1 5.7241 -4.6519 6.9391 40 1 4.9599 -3.4146 7.9655 41 1 2.9639 -5.2230 7.1154 42 1 3.9704 -7.7641 10.9068 43 1 2.4297 -10.2585 11.3249 44 1 0.8076 -8.2354 12.6306 45 1 0.2076 -8.4911 9.0001 46 1 1.4738 -6.6670 7.7448 47 1 3.3239 -1.8784 7.0514 48 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_10543058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:57:12 Heat of formation + Delta-G solvation = -3.972470 kcal Electronic energy + Delta-G solvation = -26410.729277 eV Core-core repulsion = 22555.365011 eV Total energy + Delta-G solvation = -3855.364266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.49490 -40.82022 -39.87390 -37.62660 -36.37768 -34.41142 -32.67123 -32.16589 -31.68636 -30.60294 -29.68260 -28.52343 -28.51610 -27.67271 -26.27161 -24.03497 -23.83283 -22.81335 -21.22527 -20.78645 -20.12924 -19.57124 -17.81084 -17.16351 -17.06436 -16.88445 -16.31529 -16.22264 -16.06116 -15.79229 -15.69948 -14.87966 -14.78763 -14.73118 -14.57703 -14.48926 -14.34300 -14.20886 -14.09930 -14.06118 -13.99094 -13.61923 -13.49207 -13.41438 -13.40786 -13.19927 -12.70824 -12.42651 -12.39071 -12.22665 -12.14137 -12.11173 -11.78340 -11.66095 -11.23801 -10.98544 -10.79028 -10.34236 -10.29757 -10.12620 -9.95749 -9.54659 -9.32294 -0.32830 0.23518 0.39769 1.19877 1.30876 1.41550 1.44810 1.47105 1.53590 1.57313 1.90500 1.95884 2.00083 2.27880 2.27941 2.36995 2.37272 2.99155 3.42263 3.61868 3.69921 3.75630 3.79310 3.84394 3.85309 4.02798 4.21255 4.22819 4.34311 4.54753 4.56402 4.60847 4.61119 4.65039 4.65557 4.65981 4.67675 4.75502 4.79320 4.88507 4.90906 5.04499 5.13192 5.19067 5.34590 5.34848 5.37549 5.44213 5.45131 5.57653 5.74004 5.79376 6.17566 6.38111 6.63146 6.69214 7.09330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.143 2.857 3 C -0.453 4.453 4 C -0.452 4.452 5 C -0.387 4.387 6 C -0.146 4.146 7 C 0.015 3.985 8 C -0.099 4.099 9 C -0.098 4.098 10 C -0.106 4.106 11 C 0.162 3.838 12 N -0.730 5.730 13 C 0.591 3.409 14 O -0.522 6.522 15 C -0.059 4.059 16 C -0.071 4.071 17 C -0.210 4.210 18 C -0.046 4.046 19 O -0.540 6.540 20 Si 0.946 3.054 21 H -0.252 1.252 22 H -0.252 1.252 23 H -0.254 1.254 24 C 0.028 3.972 25 N -0.535 5.535 26 C -0.098 4.098 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.395 0.605 42 H 0.153 0.847 43 H 0.115 0.885 44 H 0.374 0.626 45 H 0.171 0.829 46 H 0.418 0.582 47 H 0.131 0.869 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 1.547 -5.578 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.328 2.672 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.421 4.421 6 C -0.146 4.146 7 C 0.014 3.986 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.107 4.107 11 C 0.039 3.961 12 N -0.382 5.382 13 C 0.378 3.622 14 O -0.397 6.397 15 C -0.171 4.171 16 C -0.098 4.098 17 C -0.217 4.217 18 C -0.157 4.157 19 O -0.345 6.345 20 Si 0.769 3.231 21 H -0.175 1.175 22 H -0.175 1.175 23 H -0.177 1.177 24 C -0.109 4.109 25 N -0.131 5.131 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.229 0.771 42 H 0.170 0.830 43 H 0.133 0.867 44 H 0.221 0.779 45 H 0.188 0.812 46 H 0.255 0.745 47 H 0.149 0.851 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.398 0.881 -5.229 6.890 hybrid contribution -0.512 0.640 -0.530 0.976 sum -4.911 1.521 -5.759 7.720 Atomic orbital electron populations 1.26118 1.19974 1.04946 1.04980 0.77030 0.66018 0.64739 0.59375 1.26118 1.06742 1.18212 1.04977 1.26115 1.06731 1.08414 1.14778 1.36107 1.00160 1.01148 1.04689 1.20969 0.99720 0.98781 0.95133 1.16261 0.98141 0.94480 0.89685 1.21265 0.96937 0.94243 0.99234 1.21059 0.99292 0.99871 0.91394 1.19956 0.99838 0.96444 0.94411 1.20238 0.91406 0.90813 0.93598 1.45945 1.22275 1.40065 1.29882 1.17042 0.85579 0.79571 0.79971 1.90889 1.25798 1.68010 1.55032 1.20404 0.89180 1.06298 1.01202 1.21225 0.98250 0.94344 0.95952 1.19900 0.96921 1.04582 1.00325 1.24298 1.10959 0.96814 0.83678 1.86522 1.60451 1.58309 1.29195 0.85798 0.76172 0.80360 0.80787 1.17541 1.17517 1.17742 1.21870 0.99259 0.94401 0.95372 1.41918 1.15226 1.31122 1.24833 1.21060 0.96896 0.94755 0.98904 1.21265 0.99483 0.99947 0.90983 0.90911 0.90336 0.90931 0.90878 0.90339 0.90905 0.90920 0.90338 0.90879 0.85255 0.85099 0.89939 0.89935 0.77098 0.82954 0.86704 0.77894 0.81241 0.74468 0.85098 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.15 8.65 101.05 0.87 2.02 16 2 Si 1.14 -3.49 14.26 -169.99 -2.42 -5.91 16 3 C -0.45 1.08 8.65 101.05 0.87 1.96 16 4 C -0.45 1.13 8.65 101.05 0.87 2.00 16 5 C -0.39 -0.44 12.14 29.55 0.36 -0.08 16 6 C -0.15 -0.41 13.24 -38.83 -0.51 -0.92 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.59 16 8 C -0.10 -0.06 9.75 -39.19 -0.38 -0.44 16 9 C -0.10 0.06 9.68 -39.64 -0.38 -0.32 16 10 C -0.11 0.08 5.25 -104.55 -0.55 -0.47 16 11 C 0.16 -0.07 5.79 -5.19 -0.03 -0.10 16 12 N -0.73 0.49 5.54 -62.80 -0.35 0.14 16 13 C 0.59 1.45 7.79 -12.85 -0.10 1.35 16 14 O -0.52 -3.37 16.88 5.20 0.09 -3.28 16 15 C -0.06 -0.08 7.06 -81.98 -0.58 -0.65 16 16 C -0.07 -0.16 10.59 -39.12 -0.41 -0.58 16 17 C -0.21 -0.09 5.43 -105.02 -0.57 -0.66 16 18 C -0.05 0.01 3.02 36.01 0.11 0.12 16 19 O -0.54 -0.49 12.88 -35.23 -0.45 -0.95 16 20 Si 0.95 -1.21 25.89 -169.99 -4.40 -5.61 16 21 H -0.25 0.22 7.11 56.52 0.40 0.62 16 22 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 23 H -0.25 0.38 7.11 56.52 0.40 0.78 16 24 C 0.03 -0.04 10.45 -16.91 -0.18 -0.22 16 25 N -0.53 0.98 5.99 -9.39 -0.06 0.93 16 26 C -0.10 0.06 9.68 -39.64 -0.38 -0.32 16 27 C -0.10 -0.06 9.75 -39.19 -0.38 -0.44 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.08 -0.24 7.96 -51.93 -0.41 -0.66 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 36 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 37 H 0.13 -0.06 8.06 -52.49 -0.42 -0.48 16 38 H 0.13 -0.27 8.06 -52.49 -0.42 -0.69 16 39 H 0.08 0.01 8.08 -51.93 -0.42 -0.41 16 40 H 0.08 0.01 8.08 -51.93 -0.42 -0.41 16 41 H 0.40 -1.22 7.59 -40.82 -0.31 -1.53 16 42 H 0.15 0.46 8.06 -52.48 -0.42 0.03 16 43 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 44 H 0.37 -0.89 8.70 45.56 0.40 -0.50 16 45 H 0.17 -0.66 6.21 -52.48 -0.33 -0.99 16 46 H 0.42 -2.08 8.19 -40.82 -0.33 -2.42 16 47 H 0.13 -0.27 8.06 -52.49 -0.42 -0.69 16 48 H 0.13 -0.06 8.06 -52.48 -0.42 -0.48 16 LS Contribution 420.84 15.07 6.34 6.34 Total: 0.00 -9.77 420.84 -9.70 -19.46 By element: Atomic # 1 Polarization: -6.33 SS G_CDS: -6.46 Total: -12.79 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.99 Total: 1.67 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -0.40 Total: 1.06 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.37 Total: -4.23 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: -6.82 Total: -11.52 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -9.77 -9.70 -19.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_10543058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.492 kcal (2) G-P(sol) polarization free energy of solvation -9.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds