Wall clock time and date at job start Sun Mar 7 2021 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21685 * 120.00354 * 0.02562 * 13 12 11 15 15 C 1.46685 * 119.99207 * 180.02562 * 13 12 11 16 16 C 1.37869 * 126.22779 * 179.72072 * 15 13 12 17 17 C 1.39833 * 107.08388 * 179.85152 * 16 15 13 18 18 C 1.50708 * 126.06668 * 180.13876 * 17 16 15 19 19 O 1.42906 * 109.47049 * 65.30039 * 18 17 16 20 20 Si 1.86303 * 109.46862 * 185.29804 * 18 17 16 21 21 H 1.48507 * 109.46805 * 60.00105 * 20 18 17 22 22 H 1.48504 * 109.46795 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47330 * 300.00243 * 20 18 17 24 24 C 1.35448 * 107.86471 * 0.41354 * 17 16 15 25 25 N 1.35532 * 108.87027 * 359.74233 * 24 17 16 26 26 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 27 27 C 1.37976 * 120.14217 * 0.02562 * 26 10 9 28 28 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 29 29 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 30 30 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 33 33 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 34 34 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 35 35 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 36 36 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 37 37 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 39 39 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 40 40 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 41 41 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 42 42 H 1.08003 * 126.45665 * 359.96151 * 16 15 13 43 43 H 1.08996 * 109.46927 * 305.30086 * 18 17 16 44 44 H 0.96700 * 113.99523 * 60.00225 * 19 18 17 45 45 H 1.08004 * 125.56584 * 179.78045 * 24 17 16 46 46 H 0.97005 * 125.67461 * 180.02562 * 25 24 17 47 47 H 1.07999 * 119.93193 * 179.97438 * 26 10 9 48 48 H 1.08003 * 120.07184 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0668 -5.7504 9.3168 15 6 3.0289 -6.8604 9.1366 16 6 3.1371 -7.7029 10.2225 17 6 1.9635 -8.4615 10.2724 18 6 1.6318 -9.5165 11.2962 19 8 1.5010 -8.9077 12.5824 20 14 0.0284 -10.3461 10.8359 21 1 0.1644 -10.9788 9.4992 22 1 -0.2981 -11.3861 11.8444 23 1 -1.0586 -9.3352 10.7967 24 6 1.1804 -8.0841 9.2337 25 7 1.8164 -7.1118 8.5358 26 6 3.5437 -2.2708 6.0695 27 6 3.0807 -1.6156 4.9469 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7566 0.0005 32 1 2.1205 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9058 -1.5212 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8777 -1.5214 37 1 4.3313 -3.6977 2.5772 38 1 5.1551 -4.8441 4.5914 39 1 5.7241 -4.6519 6.9391 40 1 4.9599 -3.4146 7.9655 41 1 2.9639 -5.2230 7.1154 42 1 3.9704 -7.7641 10.9068 43 1 2.4297 -10.2585 11.3249 44 1 0.8076 -8.2354 12.6306 45 1 0.2076 -8.4911 9.0001 46 1 1.4738 -6.6670 7.7448 47 1 3.3239 -1.8784 7.0514 48 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_10543058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:57:11 Heat of formation + Delta-G solvation = -0.239079 kcal Electronic energy + Delta-G solvation = -26410.567385 eV Core-core repulsion = 22555.365011 eV Total energy + Delta-G solvation = -3855.202374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.50635 -40.84982 -39.99896 -37.62845 -36.48709 -34.48003 -32.67185 -32.14448 -31.74480 -30.63011 -29.47198 -28.30123 -28.29910 -27.70177 -26.24270 -24.08878 -23.80919 -22.83899 -21.29709 -20.78826 -20.12866 -19.57098 -17.80740 -17.28369 -17.04843 -16.93097 -16.32645 -16.21244 -16.02041 -15.84766 -15.67777 -14.87761 -14.81668 -14.72302 -14.54164 -14.46622 -14.19721 -14.13250 -14.08751 -13.90396 -13.85509 -13.72671 -13.50347 -13.18082 -13.17674 -13.00123 -12.67918 -12.41986 -12.34366 -12.25202 -12.05318 -12.01991 -11.73478 -11.64135 -11.44414 -10.82078 -10.66107 -10.41072 -10.31165 -10.11130 -9.96330 -9.57025 -9.32890 -0.34534 0.25262 0.32257 1.28550 1.35879 1.47697 1.51406 1.56116 1.64150 1.68387 1.93803 2.04428 2.09395 2.22793 2.37171 2.39879 2.45957 2.95275 3.43521 3.70432 3.72440 3.77556 3.80762 3.87709 3.96656 4.08882 4.22300 4.26237 4.35534 4.55433 4.56616 4.77380 4.78947 4.82092 4.82384 4.85209 4.88132 4.88204 4.89210 4.90858 4.93050 4.99571 5.11882 5.15929 5.34913 5.39483 5.55896 5.57197 5.66749 5.66932 5.71666 5.76128 6.27054 6.45190 6.54439 6.85301 6.97771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.202 2.798 3 C -0.464 4.464 4 C -0.462 4.462 5 C -0.390 4.390 6 C -0.192 4.192 7 C -0.007 4.007 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.100 4.100 11 C 0.165 3.835 12 N -0.712 5.712 13 C 0.591 3.409 14 O -0.571 6.571 15 C -0.070 4.070 16 C -0.097 4.097 17 C -0.224 4.224 18 C -0.057 4.057 19 O -0.562 6.562 20 Si 0.994 3.006 21 H -0.251 1.251 22 H -0.282 1.282 23 H -0.241 1.241 24 C 0.046 3.954 25 N -0.517 5.517 26 C -0.094 4.094 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.410 0.590 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.387 0.613 45 H 0.203 0.797 46 H 0.435 0.565 47 H 0.146 0.854 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 1.720 -7.021 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.383 2.617 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.421 4.421 6 C -0.192 4.192 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.113 4.113 10 C -0.101 4.101 11 C 0.042 3.958 12 N -0.364 5.364 13 C 0.379 3.621 14 O -0.450 6.450 15 C -0.183 4.183 16 C -0.124 4.124 17 C -0.230 4.230 18 C -0.167 4.167 19 O -0.369 6.369 20 Si 0.816 3.184 21 H -0.175 1.175 22 H -0.207 1.207 23 H -0.163 1.163 24 C -0.092 4.092 25 N -0.114 5.114 26 C -0.113 4.113 27 C -0.126 4.126 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.246 0.754 42 H 0.149 0.851 43 H 0.126 0.874 44 H 0.236 0.764 45 H 0.220 0.780 46 H 0.276 0.724 47 H 0.164 0.836 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.237 1.087 -6.707 9.222 hybrid contribution 0.056 0.593 -0.085 0.601 sum -6.180 1.679 -6.792 9.335 Atomic orbital electron populations 1.26215 1.20353 1.04930 1.05389 0.76271 0.64988 0.63279 0.57131 1.26243 1.06542 1.18936 1.05371 1.26225 1.06575 1.08553 1.15638 1.37483 0.99163 1.00372 1.05045 1.21581 1.01124 1.00169 0.96326 1.16525 0.98959 0.95210 0.90062 1.21389 0.97112 0.94174 0.99918 1.21215 0.98898 1.00161 0.91011 1.19895 0.99707 0.96353 0.94116 1.20190 0.91335 0.90670 0.93571 1.45785 1.22685 1.39033 1.28887 1.17206 0.85101 0.79698 0.80060 1.90859 1.27817 1.69619 1.56749 1.20148 0.90219 1.06336 1.01567 1.21253 0.98791 0.95859 0.96543 1.20011 0.96663 1.04966 1.01406 1.24553 1.12285 0.96659 0.83165 1.86481 1.61383 1.58969 1.30059 0.85130 0.74772 0.79074 0.79447 1.17465 1.20746 1.16346 1.22311 0.99717 0.93199 0.94011 1.41858 1.13932 1.30684 1.24972 1.21216 0.96318 0.94515 0.99227 1.21392 0.99888 1.00370 0.90946 0.91184 0.89261 0.91173 0.91337 0.89256 0.91218 0.91140 0.89271 0.91266 0.84801 0.83618 0.90291 0.90289 0.75435 0.85085 0.87375 0.76438 0.78028 0.72425 0.83606 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.65 8.65 113.37 0.98 3.63 16 2 Si 1.20 -7.74 14.26 68.60 0.98 -6.76 16 3 C -0.46 2.41 8.65 113.37 0.98 3.39 16 4 C -0.46 2.55 8.65 113.37 0.98 3.53 16 5 C -0.39 -1.18 12.14 74.32 0.90 -0.28 16 6 C -0.19 -1.32 13.24 30.02 0.40 -0.92 16 7 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 8 C -0.11 -0.19 9.75 22.52 0.22 0.03 16 9 C -0.09 0.12 9.68 22.23 0.22 0.34 16 10 C -0.10 0.17 5.25 -19.81 -0.10 0.06 16 11 C 0.16 -0.10 5.79 85.63 0.50 0.39 16 12 N -0.71 0.98 5.54 -470.81 -2.61 -1.63 16 13 C 0.59 3.47 7.79 86.45 0.67 4.15 16 14 O -0.57 -8.62 16.88 -4.30 -0.07 -8.69 16 15 C -0.07 -0.22 7.06 40.35 0.28 0.07 16 16 C -0.10 -0.60 10.59 22.57 0.24 -0.36 16 17 C -0.22 -0.21 5.43 -20.12 -0.11 -0.32 16 18 C -0.06 0.00 3.02 71.24 0.22 0.22 16 19 O -0.56 -1.53 12.88 -148.98 -1.92 -3.45 16 20 Si 0.99 -3.60 25.89 68.60 1.78 -1.83 16 21 H -0.25 0.94 7.11 99.48 0.71 1.65 16 22 H -0.28 -0.40 7.11 99.48 0.71 0.31 16 23 H -0.24 1.38 7.11 99.48 0.71 2.09 16 24 C 0.05 -0.21 10.45 83.48 0.87 0.66 16 25 N -0.52 2.57 5.99 -183.62 -1.10 1.47 16 26 C -0.09 0.13 9.68 22.23 0.22 0.34 16 27 C -0.11 -0.19 9.75 22.52 0.22 0.03 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.09 -0.69 7.96 -2.39 -0.02 -0.70 16 30 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.09 -0.65 7.96 -2.39 -0.02 -0.66 16 33 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 34 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 35 H 0.09 -0.67 7.96 -2.39 -0.02 -0.68 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 37 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 38 H 0.15 -0.68 8.06 -2.91 -0.02 -0.70 16 39 H 0.08 0.05 8.08 -2.39 -0.02 0.03 16 40 H 0.08 0.05 8.08 -2.39 -0.02 0.03 16 41 H 0.41 -2.92 7.59 -92.71 -0.70 -3.62 16 42 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.11 0.04 7.96 -2.39 -0.02 0.02 16 44 H 0.39 -1.70 8.70 -74.06 -0.64 -2.35 16 45 H 0.20 -2.26 6.21 -2.91 -0.02 -2.28 16 46 H 0.43 -5.25 8.19 -92.70 -0.76 -6.01 16 47 H 0.15 -0.68 8.06 -2.91 -0.02 -0.71 16 48 H 0.13 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -24.77 420.84 4.26 -20.52 By element: Atomic # 1 Polarization: -14.08 SS G_CDS: -0.35 Total: -14.43 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 7.56 Total: 14.80 kcal Atomic # 7 Polarization: 3.55 SS G_CDS: -3.71 Total: -0.16 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -1.99 Total: -12.14 kcal Atomic # 14 Polarization: -11.34 SS G_CDS: 2.75 Total: -8.59 kcal Total: -24.77 4.26 -20.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_10543058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.277 kcal (2) G-P(sol) polarization free energy of solvation -24.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds