Wall clock time and date at job start Sun Mar 7 2021 02:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35539 * 125.67757 * 2 1 4 4 C 1.35447 * 108.87141 * 180.29784 * 3 2 1 5 5 C 1.50698 * 126.06632 * 179.68950 * 4 3 2 6 6 O 1.42894 * 109.47614 * 300.01732 * 5 4 3 7 7 Si 1.86307 * 109.46926 * 180.02562 * 5 4 3 8 8 H 1.48497 * 109.47076 * 60.00326 * 7 5 4 9 9 H 1.48504 * 109.46879 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47119 * 300.00010 * 7 5 4 11 11 C 1.39835 * 107.86320 * 359.72723 * 4 3 2 12 12 C 1.37644 * 125.68071 * 179.83202 * 2 1 3 13 13 C 1.46684 * 126.23289 * 359.97438 * 12 2 1 14 14 O 1.21698 * 119.99928 * 357.78347 * 13 12 2 15 15 N 1.34776 * 120.00292 * 177.78924 * 13 12 2 16 16 C 1.46498 * 120.00004 * 175.22494 * 15 13 12 17 17 C 1.50703 * 109.46881 * 179.97438 * 16 15 13 18 18 C 1.38342 * 119.85791 * 90.00037 * 17 16 15 19 19 C 1.37972 * 120.14366 * 180.02562 * 18 17 16 20 20 C 1.39537 * 119.85225 * 359.97404 * 19 18 17 21 21 C 1.43202 * 120.14083 * 179.97438 * 20 19 18 22 22 C 9.79625 * 92.85977 * 3.62980 * 7 1 2 23 23 Si 9.37186 * 173.48890 * 345.65104 * 15 1 2 24 24 C 1.86297 * 109.47318 * 56.92962 * 23 22 21 25 25 C 1.86301 * 109.47116 * 176.92684 * 23 22 21 26 26 C 1.86299 * 109.47032 * 296.93046 * 23 22 21 27 27 C 1.39541 * 119.72187 * 0.25550 * 20 19 18 28 28 C 1.37973 * 119.85048 * 359.51275 * 27 20 19 29 29 H 1.08998 * 109.47327 * 265.97472 * 1 2 3 30 30 H 1.09000 * 109.47167 * 25.97785 * 1 2 3 31 31 H 1.09005 * 109.46694 * 145.97161 * 1 2 3 32 32 H 1.08001 * 125.56372 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.46996 * 60.02235 * 5 4 3 34 34 H 0.96696 * 114.00261 * 300.00250 * 6 5 4 35 35 H 1.08006 * 126.45571 * 179.97438 * 11 4 3 36 36 H 0.97005 * 119.99467 * 355.22289 * 15 13 12 37 37 H 1.08998 * 109.47014 * 59.99816 * 16 15 13 38 38 H 1.08994 * 109.46815 * 299.99418 * 16 15 13 39 39 H 1.08001 * 119.93077 * 0.02562 * 18 17 16 40 40 H 1.07996 * 120.07609 * 179.97438 * 19 18 17 41 41 H 1.09003 * 109.47444 * 59.99235 * 24 23 22 42 42 H 1.09001 * 109.47655 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47081 * 299.99971 * 24 23 22 44 44 H 1.09010 * 109.46862 * 60.00077 * 25 23 22 45 45 H 1.08991 * 109.47207 * 179.97438 * 25 23 22 46 46 H 1.08997 * 109.46866 * 300.00422 * 25 23 22 47 47 H 1.08988 * 109.47673 * 60.00167 * 26 23 22 48 48 H 1.09001 * 109.46712 * 180.02562 * 26 23 22 49 49 H 1.08997 * 109.47154 * 299.99654 * 26 23 22 50 50 H 1.08000 * 120.07209 * 179.72511 * 27 20 19 51 51 H 1.08005 * 119.92864 * 180.23156 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 -0.0067 5 6 4.7536 1.6190 -0.0156 6 8 4.7199 2.4414 -1.1837 7 14 6.3089 0.5933 -0.0232 8 1 6.3294 -0.2657 -1.2343 9 1 7.4929 1.4897 -0.0313 10 1 6.3441 -0.2614 1.1907 11 6 3.5779 -0.6887 -0.0047 12 6 2.2678 -1.1180 0.0033 13 6 1.8125 -2.5124 0.0079 14 8 0.6225 -2.7637 0.0499 15 7 2.7119 -3.5153 -0.0343 16 6 2.2642 -4.9058 0.0758 17 6 3.4562 -5.8247 0.0000 18 6 4.1201 -6.1887 1.1579 19 6 5.2124 -7.0292 1.0952 20 6 5.6468 -7.5128 -0.1395 21 6 6.7801 -8.3851 -0.2117 22 6 7.7105 -9.0991 -0.2648 23 14 9.2145 -10.2561 -0.3633 24 6 9.0612 -11.3474 -1.8654 25 6 10.7716 -9.2411 -0.4896 26 6 9.2854 -11.3143 1.1683 27 6 4.9758 -7.1381 -1.3042 28 6 3.8819 -6.3007 -1.2273 29 1 -0.3634 -0.0721 1.0251 30 1 -0.3633 0.9238 -0.4501 31 1 -0.3633 -0.8518 -0.5751 32 1 1.9082 2.1236 -0.0004 33 1 4.7385 2.2497 0.8734 34 1 4.7310 1.9459 -2.0140 35 1 4.4583 -1.3144 -0.0090 36 1 3.6557 -3.3162 -0.1375 37 1 1.5786 -5.1324 -0.7407 38 1 1.7546 -5.0490 1.0286 39 1 3.7826 -5.8140 2.1129 40 1 5.7301 -7.3123 1.9998 41 1 9.0196 -10.7283 -2.7616 42 1 9.9242 -12.0108 -1.9223 43 1 8.1502 -11.9413 -1.7916 44 1 10.8613 -8.6025 0.3894 45 1 11.6344 -9.9047 -0.5457 46 1 10.7300 -8.6220 -1.3857 47 1 8.3745 -11.9082 1.2422 48 1 10.1485 -11.9777 1.1119 49 1 9.3752 -10.6758 2.0472 50 1 5.3098 -7.5055 -2.2632 51 1 3.3593 -6.0129 -2.1276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_10803934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:57:24 Heat of formation + Delta-G solvation = 7.143189 kcal Electronic energy + Delta-G solvation = -28896.478759 eV Core-core repulsion = 24886.058886 eV Total energy + Delta-G solvation = -4010.419873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.57465 -40.82380 -39.95155 -37.68063 -36.45965 -34.59113 -33.87575 -32.12155 -31.95414 -30.50395 -29.46167 -28.51898 -28.29229 -28.29115 -27.30876 -25.64870 -23.81839 -23.78804 -22.76177 -21.14806 -20.74759 -19.55284 -19.19881 -17.43077 -17.22954 -17.09429 -16.99552 -16.56012 -16.10815 -15.95930 -15.84694 -15.69790 -15.42237 -15.04017 -14.66373 -14.55232 -14.45528 -14.32223 -14.17527 -14.12116 -13.90026 -13.84670 -13.77145 -13.67786 -13.17815 -13.17600 -13.16549 -13.16182 -12.99307 -12.65516 -12.39842 -12.28934 -12.21555 -12.08099 -12.00653 -11.77657 -11.62414 -11.22805 -10.80716 -10.65031 -10.36372 -10.32514 -10.08573 -9.75891 -9.54886 -9.24911 -0.32381 0.27799 0.35076 1.28386 1.37422 1.45059 1.49477 1.56628 1.63642 1.69839 1.71350 2.00425 2.20001 2.22441 2.38535 2.46948 2.47842 2.97724 3.45628 3.63019 3.67939 3.74600 3.81899 3.89555 3.90954 4.06451 4.20905 4.24552 4.28349 4.34607 4.34827 4.57229 4.57698 4.68271 4.71626 4.78433 4.80602 4.83020 4.83123 4.85992 4.88918 4.89043 4.91745 4.95192 5.09045 5.16145 5.20474 5.36950 5.41592 5.57942 5.63617 5.67575 5.67688 5.78509 5.87407 6.15909 6.35545 6.56214 6.82564 7.01303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.414 5.414 3 C 0.057 3.943 4 C -0.220 4.220 5 C -0.040 4.040 6 O -0.557 6.557 7 Si 0.979 3.021 8 H -0.255 1.255 9 H -0.279 1.279 10 H -0.260 1.260 11 C -0.138 4.138 12 C -0.073 4.073 13 C 0.588 3.412 14 O -0.579 6.579 15 N -0.706 5.706 16 C 0.169 3.831 17 C -0.101 4.101 18 C -0.095 4.095 19 C -0.109 4.109 20 C -0.008 4.008 21 C -0.192 4.192 22 C -0.390 4.390 23 Si 1.204 2.796 24 C -0.463 4.463 25 C -0.462 4.462 26 C -0.463 4.463 27 C -0.109 4.109 28 C -0.095 4.095 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.195 0.805 33 H 0.120 0.880 34 H 0.387 0.613 35 H 0.155 0.845 36 H 0.413 0.587 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.134 0.866 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 -1.173 -0.408 3.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.086 5.086 3 C -0.081 4.081 4 C -0.226 4.226 5 C -0.151 4.151 6 O -0.363 6.363 7 Si 0.804 3.196 8 H -0.178 1.178 9 H -0.204 1.204 10 H -0.184 1.184 11 C -0.165 4.165 12 C -0.186 4.186 13 C 0.377 3.623 14 O -0.461 6.461 15 N -0.358 5.358 16 C 0.046 3.954 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.008 4.008 21 C -0.192 4.192 22 C -0.421 4.421 23 Si 1.385 2.615 24 C -0.570 4.570 25 C -0.570 4.570 26 C -0.570 4.570 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.212 0.788 33 H 0.138 0.862 34 H 0.236 0.764 35 H 0.173 0.827 36 H 0.249 0.751 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.088 0.912 50 H 0.152 0.848 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.546 -1.356 0.082 2.885 hybrid contribution -0.458 0.009 -0.328 0.563 sum 2.088 -1.348 -0.246 2.497 Atomic orbital electron populations 1.22355 0.74922 1.05648 1.04443 1.44112 1.07646 1.04923 1.51918 1.22312 0.89717 0.92250 1.03784 1.19909 0.95258 0.93615 1.13832 1.24243 1.01776 0.97647 0.91455 1.86454 1.97105 1.36539 1.16245 0.85285 0.75547 0.77726 0.80993 1.17826 1.20411 1.18381 1.21406 0.94706 0.95241 1.05127 1.19934 0.90774 0.87554 1.20312 1.17136 0.85258 0.84128 0.75730 1.90800 1.17243 1.85388 1.52659 1.45633 1.10850 1.05218 1.74062 1.20181 0.93606 0.78047 1.03523 1.19918 0.97303 0.99276 0.93698 1.21225 0.94390 0.96622 0.99044 1.21390 0.97137 0.97347 0.96797 1.16529 0.92954 0.96556 0.94778 1.21582 0.96672 0.98944 1.01982 1.37496 1.04519 1.01810 0.98269 0.76239 0.57634 0.61214 0.66384 1.26232 1.05422 1.10357 1.14998 1.26227 1.16113 1.09889 1.04735 1.26228 1.05291 1.10036 1.15448 1.21391 0.95622 0.97904 0.97752 1.21223 0.95771 0.96189 0.98106 0.90199 0.86980 0.89845 0.78830 0.86199 0.76437 0.82743 0.75083 0.90175 0.90134 0.83533 0.84791 0.91198 0.89259 0.91286 0.91234 0.89260 0.91242 0.91290 0.89267 0.91191 0.84796 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.03 10.44 127.77 1.33 1.30 16 2 N -0.41 -1.08 3.16 -534.31 -1.69 -2.77 16 3 C 0.06 0.00 11.28 83.48 0.94 0.94 16 4 C -0.22 -0.10 5.41 -20.12 -0.11 -0.20 16 5 C -0.04 0.06 3.00 71.24 0.21 0.27 16 6 O -0.56 0.13 12.87 -148.98 -1.92 -1.79 16 7 Si 0.98 -0.99 25.92 68.60 1.78 0.79 16 8 H -0.25 0.23 7.11 99.48 0.71 0.93 16 9 H -0.28 -0.76 7.11 99.48 0.71 -0.06 16 10 H -0.26 -0.04 7.11 99.48 0.71 0.66 16 11 C -0.14 -0.18 8.83 22.57 0.20 0.02 16 12 C -0.07 -0.32 6.89 40.35 0.28 -0.04 16 13 C 0.59 3.60 7.78 86.45 0.67 4.27 16 14 O -0.58 -6.99 14.80 -4.34 -0.06 -7.06 16 15 N -0.71 -0.52 5.53 -470.82 -2.60 -3.13 16 16 C 0.17 0.00 5.80 85.63 0.50 0.50 16 17 C -0.10 0.04 5.25 -19.81 -0.10 -0.07 16 18 C -0.09 0.00 9.68 22.23 0.22 0.21 16 19 C -0.11 -0.34 9.75 22.52 0.22 -0.12 16 20 C -0.01 -0.05 5.72 -21.41 -0.12 -0.17 16 21 C -0.19 -1.52 13.24 30.02 0.40 -1.12 16 22 C -0.39 -1.54 12.15 74.32 0.90 -0.64 16 23 Si 1.20 -6.92 14.26 68.60 0.98 -5.95 16 24 C -0.46 2.21 8.65 113.37 0.98 3.19 16 25 C -0.46 2.24 8.65 113.37 0.98 3.22 16 26 C -0.46 2.21 8.65 113.37 0.98 3.19 16 27 C -0.11 -0.34 9.75 22.52 0.22 -0.12 16 28 C -0.09 -0.01 9.68 22.23 0.22 0.21 16 29 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.11 -0.69 8.13 -2.39 -0.02 -0.71 16 31 H 0.08 0.28 6.61 -2.38 -0.02 0.27 16 32 H 0.19 -0.93 8.06 -2.91 -0.02 -0.95 16 33 H 0.12 -0.37 7.96 -2.38 -0.02 -0.39 16 34 H 0.39 -2.31 8.70 -74.06 -0.64 -2.95 16 35 H 0.16 -0.38 5.77 -2.91 -0.02 -0.40 16 36 H 0.41 -1.13 7.37 -92.70 -0.68 -1.81 16 37 H 0.08 0.07 8.08 -2.39 -0.02 0.05 16 38 H 0.08 0.04 8.08 -2.39 -0.02 0.02 16 39 H 0.15 -0.52 8.06 -2.91 -0.02 -0.55 16 40 H 0.13 0.16 8.06 -2.91 -0.02 0.13 16 41 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 42 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 43 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 44 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 45 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 46 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 47 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 48 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 49 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 50 H 0.13 0.16 8.06 -2.91 -0.02 0.13 16 51 H 0.15 -0.50 8.06 -2.91 -0.02 -0.53 16 Total: 0.00 -20.63 439.28 5.77 -14.86 By element: Atomic # 1 Polarization: -10.18 SS G_CDS: 0.38 Total: -9.81 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 8.91 Total: 14.85 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -4.29 Total: -5.89 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -1.98 Total: -8.85 kcal Atomic # 14 Polarization: -7.91 SS G_CDS: 2.76 Total: -5.16 kcal Total: -20.63 5.77 -14.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_10803934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.000 kcal (2) G-P(sol) polarization free energy of solvation -20.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds