Wall clock time and date at job start Sun Mar 7 2021 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37642 * 125.67933 * 2 1 4 4 C 1.46678 * 126.23431 * 0.02562 * 3 2 1 5 5 O 1.21700 * 119.99787 * 4.47522 * 4 3 2 6 6 N 1.34774 * 120.00367 * 184.47327 * 4 3 2 7 7 C 1.46502 * 120.00278 * 174.66759 * 6 4 3 8 8 C 1.50702 * 109.47142 * 179.97438 * 7 6 4 9 9 C 1.38346 * 119.85668 * 89.99751 * 8 7 6 10 10 C 1.37968 * 120.14278 * 180.02562 * 9 8 7 11 11 C 1.39545 * 119.85597 * 359.97438 * 10 9 8 12 12 C 1.43197 * 120.14170 * 179.97438 * 11 10 9 13 13 C 9.66396 * 150.28069 * 172.83335 * 3 1 2 14 14 Si 9.37186 * 173.19942 * 23.34751 * 6 1 2 15 15 C 1.86302 * 109.47001 * 283.69053 * 14 13 12 16 16 C 1.86304 * 109.47546 * 43.69126 * 14 13 12 17 17 C 1.86300 * 109.47004 * 163.69327 * 14 13 12 18 18 C 1.39535 * 119.71523 * 0.25133 * 11 10 9 19 19 C 1.37974 * 119.85455 * 359.51331 * 18 11 10 20 20 C 1.37876 * 107.53658 * 179.74096 * 3 2 1 21 21 C 1.39838 * 107.08163 * 0.22916 * 20 3 2 22 22 C 1.35457 * 107.86582 * 359.97438 * 21 20 3 23 23 C 1.50695 * 125.56167 * 180.02562 * 22 21 20 24 24 O 1.42905 * 109.46850 * 209.97289 * 23 22 21 25 25 Si 1.86295 * 109.47442 * 329.97382 * 23 22 21 26 26 H 1.48500 * 109.47341 * 300.00449 * 25 23 22 27 27 H 1.48503 * 109.47021 * 60.00391 * 25 23 22 28 28 H 1.48501 * 109.47452 * 180.02562 * 25 23 22 29 29 H 1.08999 * 109.47091 * 93.02603 * 1 2 3 30 30 H 1.09001 * 109.47196 * 213.02337 * 1 2 3 31 31 H 1.08995 * 109.46688 * 333.02410 * 1 2 3 32 32 H 0.97004 * 119.99959 * 354.66209 * 6 4 3 33 33 H 1.08998 * 109.46747 * 59.99807 * 7 6 4 34 34 H 1.08998 * 109.46721 * 299.99947 * 7 6 4 35 35 H 1.08001 * 119.92908 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.07474 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47123 * 60.00467 * 15 14 13 38 38 H 1.09001 * 109.47240 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47224 * 300.00328 * 15 14 13 40 40 H 1.08996 * 109.46818 * 59.99712 * 16 14 13 41 41 H 1.08991 * 109.47269 * 180.02562 * 16 14 13 42 42 H 1.08994 * 109.46681 * 300.00387 * 16 14 13 43 43 H 1.09002 * 109.47086 * 59.99754 * 17 14 13 44 44 H 1.09001 * 109.47047 * 179.97438 * 17 14 13 45 45 H 1.08992 * 109.47176 * 299.99575 * 17 14 13 46 46 H 1.07994 * 120.07326 * 179.72988 * 18 11 10 47 47 H 1.08006 * 119.92724 * 180.22683 * 19 18 11 48 48 H 1.07994 * 126.45927 * 180.19247 * 20 3 2 49 49 H 1.08000 * 126.06804 * 179.97438 * 21 20 3 50 50 H 1.08996 * 109.47408 * 89.98243 * 23 22 21 51 51 H 0.96697 * 113.99859 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8125 2.5124 0.0005 5 8 0.6248 2.7645 0.0833 6 7 2.7093 3.5143 -0.0906 7 6 2.2498 4.9004 -0.2078 8 6 3.4413 5.8192 -0.2926 9 6 3.9802 6.1361 -1.5268 10 6 5.0713 6.9762 -1.6112 11 6 5.6311 7.5070 -0.4484 12 6 6.7639 8.3792 -0.5289 13 6 7.6937 9.0927 -0.5977 14 14 9.1971 10.2496 -0.7041 15 6 10.0177 10.3565 0.9650 16 6 10.4092 9.5798 -1.9503 17 6 8.6385 11.9469 -1.2313 18 6 5.0857 7.1797 0.7936 19 6 3.9914 6.3422 0.8640 20 6 3.5781 0.6887 0.0059 21 6 3.5522 -0.7094 0.0042 22 6 2.2555 -1.1010 -0.0021 23 6 1.7709 -2.5279 -0.0054 24 8 0.5157 -2.6031 -0.6843 25 14 3.0152 -3.6044 -0.8793 26 1 3.1803 -3.1344 -2.2783 27 1 4.3195 -3.5262 -0.1737 28 1 2.5374 -5.0104 -0.8831 29 1 -0.3633 -0.0542 -1.0262 30 1 -0.3633 -0.8616 0.5601 31 1 -0.3632 0.9158 0.4662 32 1 3.6592 3.3176 -0.0784 33 1 1.6525 5.1602 0.6662 34 1 1.6434 5.0072 -1.1072 35 1 3.5459 5.7249 -2.4260 36 1 5.4914 7.2225 -2.5752 37 1 10.3445 9.3635 1.2735 38 1 10.8799 11.0205 0.9042 39 1 9.3085 10.7484 1.6942 40 1 9.9291 9.5173 -2.9268 41 1 11.2719 10.2432 -2.0109 42 1 10.7360 8.5868 -1.6418 43 1 7.9293 12.3388 -0.5021 44 1 9.5009 12.6107 -1.2919 45 1 8.1584 11.8844 -2.2078 46 1 5.5169 7.5837 1.6975 47 1 3.5660 6.0910 1.8244 48 1 4.4584 1.3143 0.0104 49 1 4.4132 -1.3613 0.0073 50 1 1.6497 -2.8729 1.0214 51 1 0.1435 -3.4947 -0.7252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_10803936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:01:13 Heat of formation + Delta-G solvation = 1.398782 kcal Electronic energy + Delta-G solvation = -28723.757031 eV Core-core repulsion = 24713.088061 eV Total energy + Delta-G solvation = -4010.668970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.46311 -40.72907 -39.78265 -37.79112 -36.29836 -34.43069 -33.60345 -32.06870 -32.01854 -30.99673 -29.63400 -28.47167 -28.46824 -27.89542 -27.30350 -26.02205 -23.73625 -23.22665 -22.69721 -21.33590 -20.25278 -19.48507 -18.85928 -18.47114 -17.12811 -16.97847 -16.82182 -16.61854 -16.12754 -15.99433 -15.93877 -15.33954 -15.08125 -15.02251 -14.51736 -14.48775 -14.30442 -14.26131 -14.13158 -14.04868 -13.95557 -13.93723 -13.67394 -13.63345 -13.36555 -13.36049 -13.14894 -13.14227 -12.93588 -12.72542 -12.62063 -12.33583 -12.13879 -12.11679 -12.04272 -11.92945 -11.58880 -11.02912 -10.89387 -10.73054 -10.66092 -10.15179 -10.02286 -9.64934 -9.45508 -8.98564 -0.23558 0.33656 0.48652 1.00964 1.37266 1.38600 1.48675 1.50723 1.59794 1.71383 1.77846 1.95778 2.24508 2.33376 2.34378 2.47374 2.59930 3.07473 3.09238 3.52942 3.69767 3.79246 3.84641 3.88947 3.94001 4.07556 4.27121 4.30302 4.32459 4.43013 4.56409 4.61511 4.63809 4.64734 4.65993 4.66066 4.70229 4.70569 4.70728 4.72637 4.87850 4.91626 4.98183 5.05563 5.19445 5.23182 5.36296 5.39744 5.43838 5.47316 5.49542 5.49710 5.78302 5.83846 6.08030 6.23358 6.38630 6.51086 6.70782 7.22545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.386 5.386 3 C -0.055 4.055 4 C 0.592 3.408 5 O -0.546 6.546 6 N -0.716 5.716 7 C 0.164 3.836 8 C -0.104 4.104 9 C -0.097 4.097 10 C -0.099 4.099 11 C 0.013 3.987 12 C -0.144 4.144 13 C -0.389 4.389 14 Si 1.143 2.857 15 C -0.452 4.452 16 C -0.452 4.452 17 C -0.453 4.453 18 C -0.099 4.099 19 C -0.097 4.097 20 C -0.133 4.133 21 C -0.212 4.212 22 C 0.060 3.940 23 C -0.064 4.064 24 O -0.550 6.550 25 Si 0.973 3.027 26 H -0.247 1.247 27 H -0.246 1.246 28 H -0.254 1.254 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.405 0.595 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.147 0.853 49 H 0.148 0.852 50 H 0.082 0.918 51 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -1.043 0.395 3.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.057 5.057 3 C -0.169 4.169 4 C 0.381 3.619 5 O -0.425 6.425 6 N -0.368 5.368 7 C 0.042 3.958 8 C -0.105 4.105 9 C -0.115 4.115 10 C -0.117 4.117 11 C 0.013 3.987 12 C -0.144 4.144 13 C -0.424 4.424 14 Si 1.328 2.672 15 C -0.560 4.560 16 C -0.560 4.560 17 C -0.560 4.560 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.159 4.159 21 C -0.236 4.236 22 C -0.059 4.059 23 C -0.173 4.173 24 O -0.357 6.357 25 Si 0.792 3.208 26 H -0.170 1.170 27 H -0.170 1.170 28 H -0.178 1.178 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.240 0.760 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.164 0.836 49 H 0.165 0.835 50 H 0.100 0.900 51 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.928 -0.773 -0.044 3.029 hybrid contribution -0.291 -0.573 0.349 0.731 sum 2.637 -1.346 0.305 2.976 Atomic orbital electron populations 1.22315 0.75269 1.04987 1.04228 1.43717 1.07196 1.03896 1.50927 1.19955 0.90496 0.87413 1.19013 1.16951 0.85462 0.83471 0.76018 1.90799 1.16255 1.84782 1.50648 1.45665 1.10059 1.05650 1.75469 1.20213 0.93514 0.78568 1.03534 1.19937 0.97592 0.99340 0.93616 1.21050 0.95654 0.97382 0.97423 1.21252 0.95894 0.96724 0.97790 1.16256 0.92619 0.95958 0.93843 1.20979 0.95470 0.97590 1.00328 1.36077 1.04259 1.02250 0.99775 0.77021 0.59885 0.62929 0.67322 1.26115 1.07746 1.04994 1.17167 1.26113 1.11140 1.07027 1.11737 1.26119 1.06423 1.17307 1.06193 1.21251 0.95939 0.97664 0.96810 1.21052 0.95558 0.96621 0.98281 1.21241 0.94422 0.94980 1.05245 1.20569 0.94753 0.95575 1.12696 1.19974 0.90465 0.87174 1.08277 1.24545 0.94392 0.96852 1.01525 1.86478 1.35383 1.34870 1.78930 0.85381 0.77611 0.76924 0.80845 1.16972 1.16962 1.17826 0.90453 0.89357 0.88216 0.75958 0.90042 0.90164 0.85101 0.85293 0.90896 0.90375 0.90907 0.90906 0.90378 0.90899 0.90903 0.90379 0.90902 0.85289 0.85097 0.83569 0.83468 0.89992 0.76644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 9.39 59.85 0.56 0.74 16 2 N -0.39 -1.37 3.16 -115.62 -0.37 -1.73 16 3 C -0.05 -0.19 6.89 -81.98 -0.56 -0.75 16 4 C 0.59 2.19 7.77 -12.85 -0.10 2.09 16 5 O -0.55 -3.57 14.60 5.19 0.08 -3.49 16 6 N -0.72 -0.54 5.53 -62.80 -0.35 -0.89 16 7 C 0.16 0.06 5.80 -5.19 -0.03 0.03 16 8 C -0.10 0.00 5.25 -104.54 -0.55 -0.55 16 9 C -0.10 -0.01 9.68 -39.64 -0.38 -0.40 16 10 C -0.10 -0.12 9.75 -39.19 -0.38 -0.51 16 11 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 12 C -0.14 -0.48 13.24 -38.84 -0.51 -1.00 16 13 C -0.39 -0.65 12.14 29.55 0.36 -0.29 16 14 Si 1.14 -3.00 14.26 -169.99 -2.42 -5.43 16 15 C -0.45 0.96 8.65 101.05 0.87 1.84 16 16 C -0.45 0.96 8.65 101.05 0.87 1.83 16 17 C -0.45 0.92 8.65 101.05 0.87 1.79 16 18 C -0.10 -0.12 9.75 -39.19 -0.38 -0.51 16 19 C -0.10 -0.01 9.68 -39.64 -0.38 -0.40 16 20 C -0.13 -0.22 10.36 -39.12 -0.41 -0.62 16 21 C -0.21 -0.35 9.37 -39.98 -0.37 -0.73 16 22 C 0.06 0.13 6.17 -81.95 -0.51 -0.37 16 23 C -0.06 0.04 2.88 36.00 0.10 0.15 16 24 O -0.55 0.48 10.45 -35.23 -0.37 0.11 16 25 Si 0.97 -1.15 26.55 -169.99 -4.51 -5.66 16 26 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 27 H -0.25 0.23 6.79 56.52 0.38 0.61 16 28 H -0.25 0.35 7.11 56.52 0.40 0.75 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.09 7.02 -51.93 -0.36 -0.27 16 31 H 0.10 0.36 6.06 -51.93 -0.31 0.04 16 32 H 0.41 -0.44 7.36 -40.82 -0.30 -0.74 16 33 H 0.08 0.06 8.08 -51.93 -0.42 -0.36 16 34 H 0.08 0.05 8.08 -51.93 -0.42 -0.37 16 35 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 36 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 41 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 43 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 46 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 47 H 0.13 -0.17 8.06 -52.48 -0.42 -0.60 16 48 H 0.15 -0.17 7.45 -52.49 -0.39 -0.56 16 49 H 0.15 -0.04 6.65 -52.49 -0.35 -0.39 16 50 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 51 H 0.39 -2.06 8.74 45.56 0.40 -1.67 16 LS Contribution 434.82 15.07 6.55 6.55 Total: 0.00 -9.40 434.82 -10.15 -19.55 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: -7.22 Total: -10.78 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.54 Total: 1.76 kcal Atomic # 7 Polarization: -1.91 SS G_CDS: -0.71 Total: -2.62 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.29 Total: -3.38 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: -6.94 Total: -11.09 kcal Total LS contribution 6.55 Total: 6.55 kcal Total: -9.40 -10.15 -19.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_10803936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.953 kcal (2) G-P(sol) polarization free energy of solvation -9.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds