Wall clock time and date at job start Sun Mar 7 2021 03:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37642 * 125.67933 * 2 1 4 4 C 1.46678 * 126.23431 * 0.02562 * 3 2 1 5 5 O 1.21700 * 119.99787 * 4.47522 * 4 3 2 6 6 N 1.34774 * 120.00367 * 184.47327 * 4 3 2 7 7 C 1.46502 * 120.00278 * 174.66759 * 6 4 3 8 8 C 1.50702 * 109.47142 * 179.97438 * 7 6 4 9 9 C 1.38346 * 119.85668 * 89.99751 * 8 7 6 10 10 C 1.37968 * 120.14278 * 180.02562 * 9 8 7 11 11 C 1.39545 * 119.85597 * 359.97438 * 10 9 8 12 12 C 1.43197 * 120.14170 * 179.97438 * 11 10 9 13 13 C 9.66396 * 150.28069 * 172.83335 * 3 1 2 14 14 Si 9.37186 * 173.19942 * 23.34751 * 6 1 2 15 15 C 1.86302 * 109.47001 * 283.69053 * 14 13 12 16 16 C 1.86304 * 109.47546 * 43.69126 * 14 13 12 17 17 C 1.86300 * 109.47004 * 163.69327 * 14 13 12 18 18 C 1.39535 * 119.71523 * 0.25133 * 11 10 9 19 19 C 1.37974 * 119.85455 * 359.51331 * 18 11 10 20 20 C 1.37876 * 107.53658 * 179.74096 * 3 2 1 21 21 C 1.39838 * 107.08163 * 0.22916 * 20 3 2 22 22 C 1.35457 * 107.86582 * 359.97438 * 21 20 3 23 23 C 1.50695 * 125.56167 * 180.02562 * 22 21 20 24 24 O 1.42905 * 109.46850 * 209.97289 * 23 22 21 25 25 Si 1.86295 * 109.47442 * 329.97382 * 23 22 21 26 26 H 1.48500 * 109.47341 * 300.00449 * 25 23 22 27 27 H 1.48503 * 109.47021 * 60.00391 * 25 23 22 28 28 H 1.48501 * 109.47452 * 180.02562 * 25 23 22 29 29 H 1.08999 * 109.47091 * 93.02603 * 1 2 3 30 30 H 1.09001 * 109.47196 * 213.02337 * 1 2 3 31 31 H 1.08995 * 109.46688 * 333.02410 * 1 2 3 32 32 H 0.97004 * 119.99959 * 354.66209 * 6 4 3 33 33 H 1.08998 * 109.46747 * 59.99807 * 7 6 4 34 34 H 1.08998 * 109.46721 * 299.99947 * 7 6 4 35 35 H 1.08001 * 119.92908 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.07474 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47123 * 60.00467 * 15 14 13 38 38 H 1.09001 * 109.47240 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47224 * 300.00328 * 15 14 13 40 40 H 1.08996 * 109.46818 * 59.99712 * 16 14 13 41 41 H 1.08991 * 109.47269 * 180.02562 * 16 14 13 42 42 H 1.08994 * 109.46681 * 300.00387 * 16 14 13 43 43 H 1.09002 * 109.47086 * 59.99754 * 17 14 13 44 44 H 1.09001 * 109.47047 * 179.97438 * 17 14 13 45 45 H 1.08992 * 109.47176 * 299.99575 * 17 14 13 46 46 H 1.07994 * 120.07326 * 179.72988 * 18 11 10 47 47 H 1.08006 * 119.92724 * 180.22683 * 19 18 11 48 48 H 1.07994 * 126.45927 * 180.19247 * 20 3 2 49 49 H 1.08000 * 126.06804 * 179.97438 * 21 20 3 50 50 H 1.08996 * 109.47408 * 89.98243 * 23 22 21 51 51 H 0.96697 * 113.99859 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8125 2.5124 0.0005 5 8 0.6248 2.7645 0.0833 6 7 2.7093 3.5143 -0.0906 7 6 2.2498 4.9004 -0.2078 8 6 3.4413 5.8192 -0.2926 9 6 3.9802 6.1361 -1.5268 10 6 5.0713 6.9762 -1.6112 11 6 5.6311 7.5070 -0.4484 12 6 6.7639 8.3792 -0.5289 13 6 7.6937 9.0927 -0.5977 14 14 9.1971 10.2496 -0.7041 15 6 10.0177 10.3565 0.9650 16 6 10.4092 9.5798 -1.9503 17 6 8.6385 11.9469 -1.2313 18 6 5.0857 7.1797 0.7936 19 6 3.9914 6.3422 0.8640 20 6 3.5781 0.6887 0.0059 21 6 3.5522 -0.7094 0.0042 22 6 2.2555 -1.1010 -0.0021 23 6 1.7709 -2.5279 -0.0054 24 8 0.5157 -2.6031 -0.6843 25 14 3.0152 -3.6044 -0.8793 26 1 3.1803 -3.1344 -2.2783 27 1 4.3195 -3.5262 -0.1737 28 1 2.5374 -5.0104 -0.8831 29 1 -0.3633 -0.0542 -1.0262 30 1 -0.3633 -0.8616 0.5601 31 1 -0.3632 0.9158 0.4662 32 1 3.6592 3.3176 -0.0784 33 1 1.6525 5.1602 0.6662 34 1 1.6434 5.0072 -1.1072 35 1 3.5459 5.7249 -2.4260 36 1 5.4914 7.2225 -2.5752 37 1 10.3445 9.3635 1.2735 38 1 10.8799 11.0205 0.9042 39 1 9.3085 10.7484 1.6942 40 1 9.9291 9.5173 -2.9268 41 1 11.2719 10.2432 -2.0109 42 1 10.7360 8.5868 -1.6418 43 1 7.9293 12.3388 -0.5021 44 1 9.5009 12.6107 -1.2919 45 1 8.1584 11.8844 -2.2078 46 1 5.5169 7.5837 1.6975 47 1 3.5660 6.0910 1.8244 48 1 4.4584 1.3143 0.0104 49 1 4.4132 -1.3613 0.0073 50 1 1.6497 -2.8729 1.0214 51 1 0.1435 -3.4947 -0.7252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_10803936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:01:12 Heat of formation + Delta-G solvation = 7.532463 kcal Electronic energy + Delta-G solvation = -28723.491055 eV Core-core repulsion = 24713.088061 eV Total energy + Delta-G solvation = -4010.402993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 370.163 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.58680 -40.82250 -39.95695 -37.69497 -36.46272 -34.55240 -33.74191 -32.12534 -32.10886 -31.06332 -29.45790 -28.28619 -28.28301 -27.96411 -27.45356 -26.06916 -23.77432 -23.32096 -22.79905 -21.46655 -20.37634 -19.54124 -18.97252 -18.38398 -17.28876 -17.06815 -16.91956 -16.66591 -16.15876 -16.05493 -15.96697 -15.44882 -15.20726 -15.01037 -14.56389 -14.53781 -14.36123 -14.16593 -14.11434 -14.01052 -13.89639 -13.83548 -13.77018 -13.68433 -13.27106 -13.16365 -13.16161 -13.03873 -12.98526 -12.73410 -12.63880 -12.38729 -12.20982 -12.04121 -11.99912 -11.88592 -11.61508 -11.22601 -10.80129 -10.64121 -10.60151 -10.30999 -10.07187 -9.78634 -9.53677 -9.08918 -0.31198 0.29112 0.32942 1.06019 1.38211 1.45553 1.53873 1.56557 1.65935 1.70406 1.75689 2.01927 2.23876 2.27591 2.39278 2.47660 2.50481 2.98879 3.22795 3.47490 3.68314 3.75728 3.77177 3.83128 3.90961 3.96868 4.25438 4.29686 4.33832 4.35715 4.44773 4.52926 4.58337 4.58884 4.73115 4.81453 4.83693 4.84020 4.86849 4.89684 4.89874 4.92581 4.96512 5.00046 5.09286 5.17837 5.23440 5.38138 5.43119 5.58673 5.68188 5.68582 5.70407 5.79778 5.96080 6.12002 6.39697 6.57005 6.73886 7.04264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.401 5.401 3 C -0.085 4.085 4 C 0.590 3.410 5 O -0.583 6.583 6 N -0.702 5.702 7 C 0.169 3.831 8 C -0.100 4.100 9 C -0.094 4.094 10 C -0.108 4.108 11 C -0.008 4.008 12 C -0.191 4.191 13 C -0.391 4.391 14 Si 1.201 2.799 15 C -0.462 4.462 16 C -0.462 4.462 17 C -0.463 4.463 18 C -0.108 4.108 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.225 4.225 22 C 0.050 3.950 23 C -0.066 4.066 24 O -0.566 6.566 25 Si 1.012 2.988 26 H -0.283 1.283 27 H -0.247 1.247 28 H -0.248 1.248 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.171 0.829 49 H 0.166 0.834 50 H 0.104 0.896 51 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 -1.605 0.683 5.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.074 5.074 3 C -0.198 4.198 4 C 0.379 3.621 5 O -0.465 6.465 6 N -0.354 5.354 7 C 0.046 3.954 8 C -0.100 4.100 9 C -0.113 4.113 10 C -0.126 4.126 11 C -0.008 4.008 12 C -0.191 4.191 13 C -0.422 4.422 14 Si 1.383 2.617 15 C -0.569 4.569 16 C -0.569 4.569 17 C -0.570 4.570 18 C -0.126 4.126 19 C -0.112 4.112 20 C -0.151 4.151 21 C -0.248 4.248 22 C -0.069 4.069 23 C -0.175 4.175 24 O -0.376 6.376 25 Si 0.833 3.167 26 H -0.209 1.209 27 H -0.171 1.171 28 H -0.171 1.171 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.189 0.811 49 H 0.183 0.817 50 H 0.122 0.878 51 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.086 -1.359 0.259 4.314 hybrid contribution -0.612 -0.401 0.230 0.766 sum 3.474 -1.759 0.489 3.925 Atomic orbital electron populations 1.22211 0.75351 1.04721 1.03848 1.43907 1.07458 1.04401 1.51602 1.20142 0.91370 0.87367 1.20960 1.17120 0.85213 0.84118 0.75635 1.90773 1.17726 1.85306 1.52699 1.45572 1.10255 1.05336 1.74253 1.20173 0.93553 0.78307 1.03361 1.19892 0.97300 0.99159 0.93671 1.21211 0.95139 0.96839 0.98066 1.21384 0.96349 0.97090 0.97798 1.16524 0.93035 0.96541 0.94736 1.21582 0.96662 0.98922 1.01937 1.37497 1.04540 1.01848 0.98303 0.76288 0.57704 0.61219 0.66532 1.26216 1.08244 1.05121 1.17340 1.26214 1.11778 1.07202 1.11721 1.26235 1.06829 1.18053 1.05910 1.21384 0.96391 0.98091 0.96731 1.21215 0.95031 0.95987 0.99008 1.21618 0.94512 0.95463 1.03499 1.20913 0.95264 0.95923 1.12710 1.20606 0.90833 0.88186 1.07226 1.24682 0.94744 0.95156 1.02947 1.86436 1.35336 1.36819 1.78997 0.84838 0.77119 0.76634 0.78107 1.20860 1.17064 1.17100 0.91052 0.88004 0.89794 0.74790 0.90295 0.90337 0.83640 0.84788 0.91171 0.89242 0.91216 0.91206 0.89242 0.91201 0.91301 0.89228 0.91262 0.84759 0.83613 0.81113 0.81682 0.87838 0.74430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 9.39 127.77 1.20 1.70 16 2 N -0.40 -3.16 3.16 -519.70 -1.64 -4.81 16 3 C -0.09 -0.65 6.89 40.35 0.28 -0.37 16 4 C 0.59 5.03 7.77 86.45 0.67 5.71 16 5 O -0.58 -8.73 14.60 -4.35 -0.06 -8.80 16 6 N -0.70 -1.37 5.53 -470.81 -2.60 -3.97 16 7 C 0.17 0.21 5.80 85.63 0.50 0.70 16 8 C -0.10 -0.04 5.25 -19.81 -0.10 -0.14 16 9 C -0.09 -0.06 9.68 22.23 0.22 0.15 16 10 C -0.11 -0.39 9.75 22.52 0.22 -0.17 16 11 C -0.01 -0.05 5.72 -21.41 -0.12 -0.18 16 12 C -0.19 -1.58 13.24 30.01 0.40 -1.18 16 13 C -0.39 -1.67 12.14 74.32 0.90 -0.77 16 14 Si 1.20 -6.58 14.26 68.60 0.98 -5.60 16 15 C -0.46 2.19 8.65 113.37 0.98 3.17 16 16 C -0.46 2.18 8.65 113.37 0.98 3.16 16 17 C -0.46 2.04 8.65 113.37 0.98 3.02 16 18 C -0.11 -0.38 9.75 22.52 0.22 -0.16 16 19 C -0.09 -0.06 9.68 22.23 0.22 0.16 16 20 C -0.12 -0.37 10.36 22.57 0.23 -0.14 16 21 C -0.22 -0.64 9.37 22.01 0.21 -0.44 16 22 C 0.05 0.22 6.17 41.34 0.26 0.48 16 23 C -0.07 0.14 2.88 71.23 0.21 0.34 16 24 O -0.57 1.23 10.45 -148.98 -1.56 -0.33 16 25 Si 1.01 -3.14 26.55 68.60 1.82 -1.32 16 26 H -0.28 -0.81 7.11 99.48 0.71 -0.10 16 27 H -0.25 0.78 6.79 99.48 0.68 1.45 16 28 H -0.25 1.07 7.11 99.48 0.71 1.78 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.27 7.02 -2.39 -0.02 0.25 16 31 H 0.08 0.79 6.06 -2.39 -0.01 0.78 16 32 H 0.41 -0.95 7.36 -92.71 -0.68 -1.63 16 33 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 34 H 0.08 0.16 8.08 -2.39 -0.02 0.14 16 35 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 36 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 38 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 39 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 40 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 42 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 43 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 44 H 0.09 -0.59 7.96 -2.39 -0.02 -0.61 16 45 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 46 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 47 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 48 H 0.17 -0.58 7.45 -2.91 -0.02 -0.60 16 49 H 0.17 -0.27 6.65 -2.91 -0.02 -0.29 16 50 H 0.10 -0.67 7.96 -2.39 -0.02 -0.69 16 51 H 0.40 -4.69 8.74 -74.06 -0.65 -5.34 16 Total: 0.00 -23.11 434.82 5.71 -17.40 By element: Atomic # 1 Polarization: -7.97 SS G_CDS: 0.35 Total: -7.62 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 8.43 Total: 15.05 kcal Atomic # 7 Polarization: -4.53 SS G_CDS: -4.25 Total: -8.78 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -1.62 Total: -9.13 kcal Atomic # 14 Polarization: -9.72 SS G_CDS: 2.80 Total: -6.92 kcal Total: -23.11 5.71 -17.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_10803936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.934 kcal (2) G-P(sol) polarization free energy of solvation -23.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds