Wall clock time and date at job start Sun Mar 7 2021 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86289 * 109.47244 * 2 1 4 4 C 1.86304 * 109.46959 * 240.00132 * 2 1 3 5 5 C 1.89999 * 109.47259 * 120.00176 * 2 1 3 6 6 C 3.07404 * 109.47192 * 120.00206 * 2 1 3 7 7 C 4.50606 * 109.47273 * 120.00186 * 2 1 3 8 8 C 1.39533 * 120.14511 * 343.59114 * 7 6 5 9 9 C 1.37968 * 119.85768 * 180.02562 * 8 7 6 10 10 C 1.38347 * 120.14319 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.85641 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.47369 * 90.00255 * 11 10 9 13 13 C 1.34774 * 120.00291 * 179.97438 * 12 11 10 14 14 O 1.21725 * 119.99851 * 0.02562 * 13 12 11 15 15 C 1.46564 * 119.99957 * 179.97438 * 13 12 11 16 16 C 1.40857 * 126.57801 * 180.02562 * 15 13 12 17 17 C 1.40100 * 132.86588 * 0.29031 * 16 15 13 18 18 C 1.36449 * 119.24813 * 180.21951 * 17 16 15 19 19 C 1.50707 * 120.28904 * 179.75832 * 18 17 16 20 20 O 1.42903 * 109.46442 * 119.72560 * 19 18 17 21 21 Si 1.86293 * 109.47256 * 239.72127 * 19 18 17 22 22 H 1.48499 * 109.47512 * 300.00264 * 21 19 18 23 23 H 1.48505 * 109.47075 * 60.00390 * 21 19 18 24 24 H 1.48499 * 109.47038 * 180.02562 * 21 19 18 25 25 C 1.40154 * 119.41768 * 359.48745 * 18 17 16 26 26 C 1.35189 * 120.31166 * 0.25026 * 25 18 17 27 27 N 1.36238 * 120.70895 * 0.02562 * 26 25 18 28 28 N 1.40015 * 132.01111 * 179.97438 * 27 26 25 29 29 C 1.30738 * 109.60661 * 180.02562 * 28 27 26 30 30 C 1.38345 * 120.28290 * 0.25772 * 10 9 8 31 31 C 1.37974 * 120.14285 * 359.44619 * 30 10 9 32 32 H 1.08995 * 109.47123 * 299.99639 * 1 2 3 33 33 H 1.08997 * 109.47215 * 59.99807 * 1 2 3 34 34 H 1.09010 * 109.47413 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47298 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.47370 * 300.00024 * 3 2 1 37 37 H 1.08999 * 109.47465 * 60.00033 * 3 2 1 38 38 H 1.09001 * 109.46893 * 299.99552 * 4 2 1 39 39 H 1.08997 * 109.47107 * 59.99995 * 4 2 1 40 40 H 1.09003 * 109.46839 * 180.02562 * 4 2 1 41 41 H 1.08005 * 120.06725 * 359.97438 * 8 7 6 42 42 H 1.08003 * 119.92841 * 180.02562 * 9 8 7 43 43 H 1.08997 * 109.47400 * 329.99567 * 11 10 9 44 44 H 1.09010 * 109.47025 * 210.00351 * 11 10 9 45 45 H 0.97007 * 119.99985 * 359.97438 * 12 11 10 46 46 H 1.07990 * 120.37328 * 359.97438 * 17 16 15 47 47 H 1.08999 * 109.47345 * 359.72631 * 19 18 17 48 48 H 0.96700 * 114.00311 * 60.00230 * 20 19 18 49 49 H 1.07993 * 119.84582 * 180.27024 * 25 18 17 50 50 H 1.08007 * 119.64160 * 179.97438 * 26 25 18 51 51 H 1.08003 * 125.62895 * 179.97438 * 29 28 27 52 52 H 1.08004 * 119.92469 * 179.70585 * 30 10 9 53 53 H 1.08005 * 120.07207 * 180.25571 * 31 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7563 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4963 -0.8957 1.5513 6 6 2.8876 -1.4492 2.5099 7 6 3.3651 -2.1243 3.6791 8 6 2.4930 -2.8957 4.4480 9 6 2.9591 -3.5431 5.5736 10 6 4.2880 -3.4283 5.9408 11 6 4.7902 -4.1378 7.1718 12 7 5.2600 -5.4764 6.8066 13 6 5.7567 -6.2978 7.7526 14 8 5.8146 -5.9274 8.9107 15 6 6.2262 -7.6372 7.3872 16 6 6.7668 -8.6037 8.2577 17 6 7.0108 -8.6137 9.6373 18 6 7.5621 -9.7234 10.2087 19 6 7.8395 -9.7576 11.6897 20 8 7.0979 -10.8222 12.2886 21 14 9.6600 -10.0320 11.9743 22 1 10.0673 -11.3232 11.3645 23 1 10.4306 -8.9256 11.3518 24 1 9.9332 -10.0662 13.4335 25 6 7.8628 -10.8332 9.4073 26 6 7.6137 -10.8031 8.0789 27 7 7.0687 -9.6978 7.4981 28 7 6.7185 -9.4118 6.1730 29 6 6.2237 -8.2038 6.1009 30 6 5.1565 -2.6603 5.1860 31 6 4.7043 -2.0127 4.0547 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 3.5740 1.7564 -0.0005 36 1 2.1206 2.2702 -0.8900 37 1 2.1206 2.2702 0.8900 38 1 2.1206 -1.9059 -1.5211 39 1 2.1206 -0.3644 -2.4111 40 1 3.5739 -0.8786 -1.5210 41 1 1.4550 -2.9851 4.1630 42 1 2.2852 -4.1409 6.1694 43 1 3.9817 -4.2220 7.8980 44 1 5.6126 -3.5706 7.6081 45 1 5.2135 -5.7717 5.8837 46 1 6.7689 -7.7515 10.2408 47 1 7.5405 -8.8098 12.1373 48 1 7.3129 -11.6973 11.9377 49 1 8.2952 -11.7166 9.8532 50 1 7.8501 -11.6643 7.4715 51 1 5.8712 -7.7209 5.2015 52 1 6.1917 -2.5708 5.4807 53 1 5.3842 -1.4167 3.4640 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_11618758.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:01:26 Heat of formation + Delta-G solvation = 61.133429 kcal Electronic energy + Delta-G solvation = -32788.045048 eV Core-core repulsion = 28329.862035 eV Total energy + Delta-G solvation = -4458.183013 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 407.158 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.34123 -40.87689 -40.04910 -39.29897 -37.21647 -36.31277 -34.41366 -34.17239 -32.13459 -32.09550 -31.75936 -30.26372 -29.45724 -28.28839 -28.28629 -27.76413 -26.81223 -24.96048 -23.80918 -23.75849 -23.13657 -22.66248 -21.31546 -19.53300 -19.24536 -18.58384 -17.98339 -17.71819 -17.08287 -16.94853 -16.71561 -16.58509 -16.25259 -15.99898 -15.84077 -15.65207 -15.42047 -15.05575 -14.83092 -14.52816 -14.47495 -14.31588 -14.14804 -14.11452 -14.03134 -13.89162 -13.83548 -13.71578 -13.51477 -13.22928 -13.16614 -13.16314 -12.98811 -12.62067 -12.42946 -12.36862 -12.22068 -12.18383 -12.09653 -11.99399 -11.84123 -11.61143 -11.56587 -11.09678 -10.79473 -10.77290 -10.64419 -10.28574 -10.19962 -10.05707 -9.51954 -8.82642 -0.59156 -0.29154 -0.15423 0.30346 0.97594 1.00840 1.10727 1.38136 1.45261 1.57037 1.57590 1.70246 1.92418 2.04943 2.15209 2.39001 2.45950 2.47466 2.48359 2.98482 3.09017 3.23872 3.43404 3.52345 3.62115 3.70354 3.77905 3.83525 3.86471 3.92001 3.95782 4.18949 4.28866 4.31050 4.35092 4.40515 4.58683 4.61148 4.64879 4.77856 4.83518 4.83634 4.84361 4.86510 4.89370 4.89571 4.92326 4.97910 5.09844 5.13081 5.19709 5.25349 5.35915 5.39307 5.45489 5.58332 5.63376 5.67934 5.68140 5.81186 6.25020 6.53309 6.57327 6.69614 7.22831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.200 2.800 3 C -0.462 4.462 4 C -0.461 4.461 5 C -0.392 4.392 6 C -0.190 4.190 7 C -0.010 4.010 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.098 4.098 11 C 0.169 3.831 12 N -0.712 5.712 13 C 0.600 3.400 14 O -0.589 6.589 15 C -0.343 4.343 16 C 0.152 3.848 17 C -0.122 4.122 18 C -0.057 4.057 19 C -0.083 4.083 20 O -0.545 6.545 21 Si 0.989 3.011 22 H -0.220 1.220 23 H -0.275 1.275 24 H -0.264 1.264 25 C -0.156 4.156 26 C 0.114 3.886 27 N -0.274 5.274 28 N -0.339 5.339 29 C 0.130 3.870 30 C -0.095 4.095 31 C -0.108 4.108 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.134 0.866 42 H 0.145 0.855 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.411 0.589 46 H 0.150 0.850 47 H 0.121 0.879 48 H 0.394 0.606 49 H 0.204 0.796 50 H 0.208 0.792 51 H 0.230 0.770 52 H 0.146 0.854 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 -2.642 -3.735 4.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.381 2.619 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.423 4.423 6 C -0.190 4.190 7 C -0.010 4.010 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.098 4.098 11 C 0.046 3.954 12 N -0.364 5.364 13 C 0.390 3.610 14 O -0.471 6.471 15 C -0.358 4.358 16 C 0.031 3.969 17 C -0.142 4.142 18 C -0.063 4.063 19 C -0.192 4.192 20 O -0.353 6.353 21 Si 0.809 3.191 22 H -0.142 1.142 23 H -0.200 1.200 24 H -0.188 1.188 25 C -0.176 4.176 26 C -0.011 4.011 27 N -0.038 5.038 28 N -0.160 5.160 29 C -0.050 4.050 30 C -0.113 4.113 31 C -0.126 4.126 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.248 0.752 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.244 0.756 49 H 0.221 0.779 50 H 0.225 0.775 51 H 0.246 0.754 52 H 0.164 0.836 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.246 -3.138 -3.136 4.973 hybrid contribution -0.540 0.485 -0.054 0.728 sum 1.706 -2.653 -3.190 4.486 Atomic orbital electron populations 1.26218 1.20434 1.04934 1.05357 0.76309 0.64999 0.63392 0.57180 1.26226 1.06617 1.18796 1.05339 1.26214 1.06600 1.08495 1.15571 1.37489 0.99429 1.00389 1.05013 1.21594 1.00994 1.00129 0.96313 1.16516 0.94318 0.97868 0.92285 1.21377 0.99912 0.96441 0.94854 1.21209 0.95390 0.98640 0.96111 1.19929 0.94083 0.99070 0.96750 1.20115 0.99695 0.81921 0.93684 1.45620 1.64251 1.14939 1.11562 1.16983 0.76168 0.83306 0.84534 1.90763 1.58769 1.77090 1.20457 1.19676 1.24476 0.97918 0.93686 1.19541 0.96554 0.88101 0.92745 1.20704 1.01423 1.01098 0.90982 1.20769 0.94079 0.93280 0.98165 1.25183 1.10199 0.95521 0.88276 1.86599 1.66194 1.18356 1.64109 0.85163 0.71212 0.82167 0.80527 1.14183 1.19988 1.18800 1.21274 1.03900 1.01195 0.91276 1.22310 0.94524 0.89324 0.94960 1.46339 1.39025 1.11253 1.07160 1.77562 1.26950 1.19030 0.92417 1.24541 0.92020 0.90402 0.98083 1.21212 1.00596 0.95778 0.93733 1.21382 0.94152 0.99694 0.97351 0.91259 0.89236 0.91168 0.91190 0.89228 0.91298 0.91219 0.89224 0.91202 0.84851 0.83687 0.90635 0.90565 0.75236 0.83267 0.86106 0.75614 0.77890 0.77495 0.75413 0.83638 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.06 8.65 113.37 0.98 3.04 16 2 Si 1.20 -6.33 14.26 68.60 0.98 -5.35 16 3 C -0.46 2.01 8.65 113.37 0.98 3.00 16 4 C -0.46 2.11 8.65 113.37 0.98 3.09 16 5 C -0.39 -1.76 12.14 74.32 0.90 -0.86 16 6 C -0.19 -1.61 13.24 30.02 0.40 -1.21 16 7 C -0.01 -0.06 5.72 -21.41 -0.12 -0.19 16 8 C -0.11 -0.40 9.75 22.52 0.22 -0.18 16 9 C -0.10 -0.08 9.68 22.23 0.22 0.14 16 10 C -0.10 -0.05 5.25 -19.81 -0.10 -0.16 16 11 C 0.17 0.26 5.79 85.63 0.50 0.76 16 12 N -0.71 -1.24 5.54 -470.92 -2.61 -3.84 16 13 C 0.60 5.10 7.78 86.41 0.67 5.78 16 14 O -0.59 -9.15 15.71 -4.43 -0.07 -9.22 16 15 C -0.34 -2.46 6.17 -19.90 -0.12 -2.58 16 16 C 0.15 1.16 6.76 39.50 0.27 1.43 16 17 C -0.12 -0.67 9.35 22.30 0.21 -0.46 16 18 C -0.06 0.06 4.53 -19.81 -0.09 -0.03 16 19 C -0.08 0.27 2.84 71.24 0.20 0.47 16 20 O -0.54 1.64 12.88 -148.98 -1.92 -0.28 16 21 Si 0.99 -4.53 27.26 68.60 1.87 -2.66 16 22 H -0.22 1.92 7.04 99.48 0.70 2.62 16 23 H -0.27 0.01 7.11 99.48 0.71 0.72 16 24 H -0.26 0.25 7.11 99.48 0.71 0.96 16 25 C -0.16 0.98 8.38 22.03 0.18 1.17 16 26 C 0.11 -0.36 11.17 83.31 0.93 0.57 16 27 N -0.27 -1.29 3.86 -187.27 -0.72 -2.01 16 28 N -0.34 -2.02 12.57 -56.62 -0.71 -2.74 16 29 C 0.13 0.36 11.44 85.42 0.98 1.33 16 30 C -0.09 -0.07 9.68 22.23 0.22 0.15 16 31 C -0.11 -0.39 9.75 22.52 0.22 -0.17 16 32 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 33 H 0.09 -0.59 7.96 -2.39 -0.02 -0.61 16 34 H 0.07 -0.26 7.96 -2.38 -0.02 -0.27 16 35 H 0.07 -0.25 7.96 -2.38 -0.02 -0.26 16 36 H 0.09 -0.58 7.96 -2.38 -0.02 -0.60 16 37 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 38 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 39 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 40 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 41 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 43 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 44 H 0.08 0.20 8.08 -2.38 -0.02 0.18 16 45 H 0.41 -1.33 7.38 -92.70 -0.68 -2.01 16 46 H 0.15 1.15 7.01 -2.92 -0.02 1.13 16 47 H 0.12 -0.30 7.71 -2.39 -0.02 -0.31 16 48 H 0.39 -4.81 8.08 -74.06 -0.60 -5.41 16 49 H 0.20 -3.15 7.25 -2.91 -0.02 -3.17 16 50 H 0.21 -2.09 8.06 -2.91 -0.02 -2.11 16 51 H 0.23 -1.39 7.46 -2.91 -0.02 -1.41 16 52 H 0.15 -0.39 8.06 -2.91 -0.02 -0.41 16 53 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 Total: 0.00 -29.30 461.74 5.85 -23.44 By element: Atomic # 1 Polarization: -12.84 SS G_CDS: 0.42 Total: -12.42 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 8.61 Total: 15.07 kcal Atomic # 7 Polarization: -4.55 SS G_CDS: -4.04 Total: -8.59 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -1.99 Total: -9.49 kcal Atomic # 14 Polarization: -10.86 SS G_CDS: 2.85 Total: -8.01 kcal Total: -29.30 5.85 -23.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_11618758.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.576 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds