Wall clock time and date at job start Sun Mar 7 2021 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 125.56303 * 2 1 4 4 C 1.50699 * 126.06940 * 0.02562 * 3 2 1 5 5 O 1.42907 * 109.46977 * 123.27003 * 4 3 2 6 6 Si 1.86299 * 109.47057 * 243.26641 * 4 3 2 7 7 H 1.48499 * 109.47081 * 54.29834 * 6 4 3 8 8 H 1.48504 * 109.47015 * 174.29989 * 6 4 3 9 9 H 1.48502 * 109.47323 * 294.29689 * 6 4 3 10 10 C 1.39842 * 107.86387 * 180.02562 * 3 2 1 11 11 C 1.50701 * 126.45932 * 180.02562 * 10 3 2 12 12 C 1.37870 * 107.08357 * 0.02562 * 10 3 2 13 13 C 1.46675 * 126.23470 * 179.97438 * 12 10 3 14 14 O 1.21697 * 119.99899 * 0.02562 * 13 12 10 15 15 N 1.34776 * 120.00425 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00352 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47183 * 179.97438 * 16 15 13 18 18 C 1.38343 * 119.85777 * 89.99541 * 17 16 15 19 19 C 1.37968 * 120.14289 * 180.02562 * 18 17 16 20 20 C 1.39531 * 119.85762 * 359.97438 * 19 18 17 21 21 C 1.43201 * 120.14612 * 179.97438 * 20 19 18 22 22 C 9.66394 * 101.74407 * 179.91821 * 12 1 2 23 23 Si 9.37185 * 113.32348 * 179.97438 * 15 1 2 24 24 C 1.86307 * 109.47168 * 35.52766 * 23 22 21 25 25 C 1.86296 * 109.47088 * 155.52426 * 23 22 21 26 26 C 1.86302 * 109.47568 * 275.52850 * 23 22 21 27 27 C 1.39540 * 119.71753 * 0.24081 * 20 19 18 28 28 C 1.37972 * 119.85308 * 359.52467 * 27 20 19 29 29 N 1.35532 * 125.55986 * 180.35352 * 2 1 3 30 30 H 1.08998 * 109.47178 * 84.69026 * 1 2 3 31 31 H 1.09000 * 109.47524 * 204.69107 * 1 2 3 32 32 H 1.09001 * 109.47037 * 324.69195 * 1 2 3 33 33 H 1.08995 * 109.47199 * 3.27082 * 4 3 2 34 34 H 0.96703 * 113.99575 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47042 * 269.98574 * 11 10 3 36 36 H 1.09000 * 109.46811 * 29.98422 * 11 10 3 37 37 H 1.08997 * 109.47104 * 149.98532 * 11 10 3 38 38 H 0.97005 * 119.99523 * 359.97438 * 15 13 12 39 39 H 1.09000 * 109.47221 * 59.99426 * 16 15 13 40 40 H 1.08999 * 109.46749 * 299.99647 * 16 15 13 41 41 H 1.08004 * 119.92910 * 0.02562 * 18 17 16 42 42 H 1.08004 * 120.07121 * 179.97438 * 19 18 17 43 43 H 1.08994 * 109.47329 * 59.99342 * 24 23 22 44 44 H 1.09003 * 109.47210 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.46689 * 299.99996 * 24 23 22 46 46 H 1.08998 * 109.47264 * 60.00454 * 25 23 22 47 47 H 1.09003 * 109.47072 * 180.02562 * 25 23 22 48 48 H 1.09001 * 109.47612 * 300.00190 * 25 23 22 49 49 H 1.08999 * 109.47187 * 59.99453 * 26 23 22 50 50 H 1.08991 * 109.47201 * 180.02562 * 26 23 22 51 51 H 1.09002 * 109.46751 * 300.00094 * 26 23 22 52 52 H 1.08001 * 120.07062 * 179.72884 * 27 20 19 53 53 H 1.07999 * 119.93071 * 180.22532 * 28 27 20 54 54 H 0.96996 * 125.68428 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5321 0.0005 5 8 2.3717 3.2167 1.1270 6 14 2.3735 3.3708 -1.5681 7 1 1.9157 2.5814 -2.7396 8 1 1.7907 4.7352 -1.6322 9 1 3.8555 3.4644 -1.5830 10 6 3.6270 0.6767 -0.0006 11 6 4.8486 1.5591 -0.0003 12 6 3.6122 -0.7019 -0.0015 13 6 4.7859 -1.5816 -0.0029 14 8 5.9049 -1.1031 -0.0029 15 7 4.6252 -2.9197 -0.0043 16 6 5.7975 -3.7983 -0.0051 17 6 5.3475 -5.2365 -0.0059 18 6 5.1414 -5.8930 -1.2061 19 6 4.7288 -7.2096 -1.2137 20 6 4.5199 -7.8790 -0.0075 21 6 4.0911 -9.2454 -0.0081 22 6 3.7382 -10.3650 -0.0092 23 14 3.1690 -12.1777 -0.0140 24 6 1.6199 -12.3395 -1.0362 25 6 4.5086 -13.2474 -0.7432 26 6 2.8201 -12.7238 1.7327 27 6 4.7252 -7.2098 1.1997 28 6 5.1425 -5.8947 1.1935 29 7 2.2952 -1.1025 -0.0068 30 1 -0.3633 0.0951 -1.0232 31 1 -0.3634 -0.9337 0.4293 32 1 -0.3633 0.8386 0.5940 33 1 0.7318 2.5536 0.0596 34 1 2.1074 4.1447 1.1914 35 1 5.1431 1.7724 -1.0278 36 1 4.6220 2.4931 0.5140 37 1 5.6643 1.0502 0.5132 38 1 3.7333 -3.3011 -0.0039 39 1 6.3965 -3.6059 0.8850 40 1 6.3964 -3.6041 -0.8949 41 1 5.3038 -5.3739 -2.1391 42 1 4.5679 -7.7209 -2.1513 43 1 1.8239 -12.0200 -2.0581 44 1 1.2935 -13.3795 -1.0394 45 1 0.8361 -11.7136 -0.6096 46 1 5.4150 -13.1528 -0.1452 47 1 4.1819 -14.2873 -0.7464 48 1 4.7128 -12.9280 -1.7652 49 1 2.0364 -12.0980 2.1594 50 1 2.4940 -13.7638 1.7299 51 1 3.7265 -12.6292 2.3308 52 1 4.5610 -7.7212 2.1367 53 1 5.3053 -5.3767 2.1271 54 1 1.9833 -2.0210 -0.0121 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13422146_12297754.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:01:42 Heat of formation + Delta-G solvation = -9.352044 kcal Electronic energy + Delta-G solvation = -30910.612789 eV Core-core repulsion = 26743.940009 eV Total energy + Delta-G solvation = -4166.672779 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 384.178 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.65403 -40.85816 -39.99352 -37.62160 -36.50117 -34.54041 -33.79467 -33.06169 -32.15267 -31.56126 -29.47672 -29.22615 -28.30248 -28.29973 -28.25866 -26.95232 -25.86444 -23.81587 -23.10627 -22.40255 -20.78023 -20.02551 -19.58179 -19.45263 -18.31577 -17.31648 -16.97837 -16.87848 -16.46065 -16.20268 -16.03926 -15.69614 -15.36696 -15.19822 -14.81985 -14.58308 -14.53548 -14.44415 -14.22254 -14.13923 -14.12868 -14.02459 -13.90543 -13.85131 -13.74534 -13.52997 -13.21990 -13.18144 -13.17776 -13.13841 -13.00172 -12.67951 -12.55768 -12.46358 -12.42436 -12.24650 -12.17838 -12.02244 -11.70809 -11.64577 -11.15816 -10.81669 -10.66182 -10.46800 -10.37364 -10.11858 -9.57364 -9.49060 -8.98664 -0.34987 0.24518 0.33395 1.11924 1.35594 1.44063 1.51300 1.52750 1.67725 1.68082 1.95659 2.06136 2.09543 2.24162 2.36971 2.40150 2.45785 2.94862 3.43370 3.62617 3.71762 3.77379 3.81237 3.86860 3.90005 4.10134 4.21344 4.21829 4.25544 4.42976 4.48582 4.54814 4.56078 4.62923 4.77506 4.77946 4.81859 4.82039 4.82312 4.85165 4.88077 4.88247 4.90888 4.92199 4.96393 5.06503 5.14169 5.16680 5.23360 5.29995 5.34060 5.39017 5.57119 5.66609 5.66956 5.68527 5.75379 5.85455 6.31424 6.50210 6.53980 6.97240 7.01861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.092 3.908 3 C -0.199 4.199 4 C -0.030 4.030 5 O -0.562 6.562 6 Si 0.954 3.046 7 H -0.270 1.270 8 H -0.249 1.249 9 H -0.270 1.270 10 C -0.070 4.070 11 C -0.093 4.093 12 C -0.083 4.083 13 C 0.590 3.410 14 O -0.563 6.563 15 N -0.715 5.715 16 C 0.167 3.833 17 C -0.100 4.100 18 C -0.095 4.095 19 C -0.108 4.108 20 C -0.007 4.007 21 C -0.192 4.192 22 C -0.390 4.390 23 Si 1.201 2.799 24 C -0.461 4.461 25 C -0.463 4.463 26 C -0.462 4.462 27 C -0.108 4.108 28 C -0.095 4.095 29 N -0.523 5.523 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.394 0.606 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.408 0.592 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.068 0.932 52 H 0.134 0.866 53 H 0.145 0.855 54 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 -4.434 -0.361 9.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.028 4.028 3 C -0.205 4.205 4 C -0.142 4.142 5 O -0.370 6.370 6 Si 0.778 3.222 7 H -0.195 1.195 8 H -0.172 1.172 9 H -0.195 1.195 10 C -0.079 4.079 11 C -0.150 4.150 12 C -0.195 4.195 13 C 0.379 3.621 14 O -0.443 6.443 15 N -0.367 5.367 16 C 0.044 3.956 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.126 4.126 20 C -0.007 4.007 21 C -0.192 4.192 22 C -0.420 4.420 23 Si 1.382 2.618 24 C -0.569 4.569 25 C -0.571 4.571 26 C -0.569 4.569 27 C -0.126 4.126 28 C -0.113 4.113 29 N -0.121 5.121 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.244 0.756 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.243 0.757 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.108 0.892 51 H 0.087 0.913 52 H 0.152 0.848 53 H 0.163 0.837 54 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -6.770 -4.314 -1.025 8.093 hybrid contribution -0.235 0.045 0.211 0.319 sum -7.005 -4.269 -0.814 8.244 Atomic orbital electron populations 1.20686 0.84523 1.05357 1.04848 1.20742 0.95027 0.84820 1.02198 1.18721 0.91972 0.94339 1.15495 1.23830 1.00846 0.91404 0.98104 1.86505 1.74864 1.28982 1.46681 0.85742 0.80498 0.79322 0.76606 1.19492 1.17228 1.19499 1.19955 0.95582 0.91541 1.00782 1.20413 0.94396 0.98654 1.01521 1.19885 0.83720 0.93664 1.22220 1.17142 0.87249 0.81799 0.75862 1.90822 1.25631 1.75732 1.52072 1.45783 1.10495 1.04686 1.75688 1.20169 0.87420 0.84434 1.03583 1.19905 1.01418 0.95101 0.93626 1.21207 0.97696 0.93899 0.98509 1.21386 0.98989 0.94891 0.97290 1.16517 1.00547 0.88985 0.94694 1.21572 1.01342 0.94267 1.02023 1.37503 0.98847 1.07477 0.98215 0.76293 0.65243 0.53646 0.66569 1.26211 1.15510 1.05736 1.09409 1.26242 1.13068 1.10677 1.07093 1.26218 1.05310 1.06890 1.18528 1.21388 0.98977 0.94908 0.97284 1.21209 0.97687 0.93917 0.98527 1.41731 1.04203 1.09198 1.56992 0.88599 0.89436 0.88410 0.88354 0.75617 0.92270 0.90473 0.91848 0.75669 0.90401 0.90338 0.83677 0.84746 0.91196 0.89228 0.91165 0.91332 0.89225 0.91243 0.91139 0.89238 0.91257 0.84771 0.83724 0.72843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.81 9.96 71.24 0.71 1.51 16 2 C 0.09 -0.04 7.13 41.34 0.29 0.25 16 3 C -0.20 -0.93 4.52 -20.12 -0.09 -1.02 16 4 C -0.03 -0.01 2.78 71.24 0.20 0.19 16 5 O -0.56 -0.90 11.71 -148.98 -1.74 -2.65 16 6 Si 0.95 1.95 26.77 68.60 1.84 3.78 16 7 H -0.27 -1.23 7.11 99.48 0.71 -0.53 16 8 H -0.25 -0.08 7.11 99.48 0.71 0.62 16 9 H -0.27 -1.87 6.09 99.48 0.61 -1.27 16 10 C -0.07 -0.67 5.86 -19.56 -0.11 -0.78 16 11 C -0.09 -1.06 8.04 71.24 0.57 -0.48 16 12 C -0.08 -0.56 7.06 40.35 0.28 -0.27 16 13 C 0.59 4.85 7.79 86.45 0.67 5.52 16 14 O -0.56 -8.98 14.80 -4.34 -0.06 -9.05 16 15 N -0.71 -0.58 5.54 -470.82 -2.61 -3.19 16 16 C 0.17 0.15 5.79 85.63 0.50 0.64 16 17 C -0.10 0.03 5.25 -19.81 -0.10 -0.07 16 18 C -0.09 0.02 9.68 22.23 0.22 0.23 16 19 C -0.11 -0.29 9.75 22.52 0.22 -0.07 16 20 C -0.01 -0.04 5.72 -21.41 -0.12 -0.16 16 21 C -0.19 -1.44 13.24 30.02 0.40 -1.04 16 22 C -0.39 -1.39 12.14 74.32 0.90 -0.49 16 23 Si 1.20 -7.27 14.26 68.60 0.98 -6.29 16 24 C -0.46 2.49 8.65 113.37 0.98 3.47 16 25 C -0.46 2.24 8.65 113.37 0.98 3.22 16 26 C -0.46 2.41 8.65 113.37 0.98 3.39 16 27 C -0.11 -0.30 9.75 22.52 0.22 -0.08 16 28 C -0.10 0.00 9.68 22.23 0.22 0.22 16 29 N -0.52 0.52 5.99 -171.93 -1.03 -0.51 16 30 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.10 -0.92 7.29 -2.39 -0.02 -0.94 16 33 H 0.10 -0.58 6.66 -2.39 -0.02 -0.60 16 34 H 0.39 -3.04 8.74 -74.05 -0.65 -3.69 16 35 H 0.06 0.68 7.59 -2.39 -0.02 0.67 16 36 H 0.08 0.78 6.68 -2.39 -0.02 0.76 16 37 H 0.06 0.92 6.49 -2.39 -0.02 0.91 16 38 H 0.41 -1.84 7.59 -92.70 -0.70 -2.54 16 39 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 40 H 0.08 0.16 8.08 -2.39 -0.02 0.14 16 41 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 42 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 43 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 45 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 46 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 47 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 48 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 49 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 50 H 0.09 -0.65 7.96 -2.39 -0.02 -0.67 16 51 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 52 H 0.13 0.12 8.06 -2.91 -0.02 0.09 16 53 H 0.15 -0.46 8.06 -2.91 -0.02 -0.49 16 54 H 0.43 -3.47 8.19 -92.71 -0.76 -4.23 16 Total: 0.00 -25.74 455.06 4.76 -20.98 By element: Atomic # 1 Polarization: -16.74 SS G_CDS: -0.52 Total: -17.26 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 7.91 Total: 14.18 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -3.64 Total: -3.70 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -1.81 Total: -11.69 kcal Atomic # 14 Polarization: -5.32 SS G_CDS: 2.81 Total: -2.51 kcal Total: -25.74 4.76 -20.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12297754.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.629 kcal (2) G-P(sol) polarization free energy of solvation -25.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds