Wall clock time and date at job start Sun Mar 7 2021 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46646 * 2 1 4 4 C 1.86293 * 109.47318 * 240.00288 * 2 1 3 5 5 C 1.90000 * 109.47168 * 119.99863 * 2 1 3 6 6 C 3.07393 * 109.47246 * 120.00035 * 2 1 3 7 7 C 4.50598 * 109.47280 * 119.99999 * 2 1 3 8 8 C 1.39538 * 120.13877 * 86.80945 * 7 6 5 9 9 C 1.37975 * 119.85322 * 179.74079 * 8 7 6 10 10 C 1.38344 * 120.14247 * 0.53432 * 9 8 7 11 11 C 1.50697 * 119.85875 * 179.69958 * 10 9 8 12 12 N 1.46508 * 109.46910 * 270.02048 * 11 10 9 13 13 C 1.34780 * 119.99537 * 179.97438 * 12 11 10 14 14 O 1.21564 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.47694 * 119.99593 * 179.97438 * 13 12 11 16 16 C 1.39628 * 120.16382 * 359.73327 * 15 13 12 17 17 C 1.37899 * 119.87458 * 179.80775 * 16 15 13 18 18 C 1.50694 * 119.89182 * 180.18557 * 17 16 15 19 19 O 1.42899 * 109.47349 * 300.25508 * 18 17 16 20 20 Si 1.86300 * 109.47220 * 180.25682 * 18 17 16 21 21 H 1.48493 * 109.47468 * 60.00109 * 20 18 17 22 22 H 1.48503 * 109.47293 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47224 * 299.99659 * 20 18 17 24 24 C 1.38416 * 120.21825 * 0.44324 * 17 16 15 25 25 C 1.38246 * 120.34130 * 359.78441 * 24 17 16 26 26 C 1.38281 * 120.11699 * 0.02562 * 25 24 17 27 27 F 1.35096 * 120.11091 * 179.97438 * 26 25 24 28 28 C 1.38344 * 120.28621 * 359.71923 * 10 9 8 29 29 C 1.37976 * 120.14217 * 0.02562 * 28 10 9 30 30 H 1.09000 * 109.47332 * 299.99899 * 1 2 3 31 31 H 1.09002 * 109.47176 * 60.00004 * 1 2 3 32 32 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47058 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47329 * 299.99902 * 3 2 1 35 35 H 1.08996 * 109.47529 * 60.00319 * 3 2 1 36 36 H 1.09001 * 109.47264 * 300.00126 * 4 2 1 37 37 H 1.09002 * 109.47236 * 59.99744 * 4 2 1 38 38 H 1.08998 * 109.47688 * 179.97438 * 4 2 1 39 39 H 1.07994 * 120.07438 * 359.97438 * 8 7 6 40 40 H 1.07997 * 119.92811 * 180.25840 * 9 8 7 41 41 H 1.09000 * 109.47322 * 30.01825 * 11 10 9 42 42 H 1.08994 * 109.47456 * 150.02543 * 11 10 9 43 43 H 0.96996 * 119.99768 * 0.02562 * 12 11 10 44 44 H 1.07996 * 120.06196 * 0.02562 * 16 15 13 45 45 H 1.09003 * 109.47478 * 60.25705 * 18 17 16 46 46 H 0.96698 * 114.00439 * 179.97438 * 19 18 17 47 47 H 1.08002 * 119.83094 * 179.76464 * 24 17 16 48 48 H 1.07997 * 119.94372 * 179.97438 * 25 24 17 49 49 H 1.07999 * 119.93193 * 179.97438 * 28 10 9 50 50 H 1.08003 * 120.07184 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8877 -1.4491 2.5098 7 6 3.3651 -2.1241 3.6791 8 6 4.1119 -3.2964 3.5555 9 6 4.5735 -3.9390 4.6858 10 6 4.2880 -3.4297 5.9400 11 6 4.7897 -4.1405 7.1704 12 7 3.7925 -5.1202 7.6091 13 6 4.0271 -5.8792 8.6978 14 8 5.0658 -5.7506 9.3162 15 6 3.0216 -6.8664 9.1403 16 6 1.8246 -7.0123 8.4365 17 6 0.8917 -7.9386 8.8526 18 6 -0.3986 -8.0993 8.0909 19 8 -1.1099 -6.8599 8.0918 20 14 -1.4398 -9.4134 8.9032 21 1 -1.7375 -9.0146 10.3023 22 1 -2.7111 -9.5722 8.1522 23 1 -0.7008 -10.7014 8.9022 24 6 1.1341 -8.7176 9.9708 25 6 2.3143 -8.5773 10.6771 26 6 3.2612 -7.6555 10.2700 27 9 4.4141 -7.5182 10.9605 28 6 3.5437 -2.2708 6.0695 29 6 3.0807 -1.6156 4.9469 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5739 1.7566 0.0005 34 1 2.1205 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3643 -2.4111 38 1 3.5740 -0.8777 -1.5214 39 1 4.3313 -3.6977 2.5772 40 1 5.1551 -4.8441 4.5914 41 1 5.7241 -4.6519 6.9391 42 1 4.9599 -3.4146 7.9655 43 1 2.9639 -5.2230 7.1154 44 1 1.6312 -6.4032 7.5659 45 1 -0.1803 -8.3921 7.0639 46 1 -1.9523 -6.8895 7.6179 47 1 0.3975 -9.4386 10.2933 48 1 2.4966 -9.1882 11.5488 49 1 3.3239 -1.8784 7.0514 50 1 2.4993 -0.7112 5.0494 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13422146_12335834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:06:23 Heat of formation + Delta-G solvation = -61.218997 kcal Electronic energy + Delta-G solvation = -30608.353377 eV Core-core repulsion = 26218.252510 eV Total energy + Delta-G solvation = -4390.100866 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.142 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.80634 -41.31929 -40.49989 -39.67650 -37.64214 -36.30404 -34.39605 -32.95623 -32.45689 -32.08965 -31.24457 -29.64806 -28.48703 -28.48151 -27.51646 -26.69392 -25.21514 -23.75735 -23.32063 -22.51542 -21.46668 -19.50895 -19.25283 -18.75470 -18.28311 -17.84486 -16.90259 -16.86023 -16.57730 -16.50890 -16.22552 -16.00761 -15.86493 -15.63510 -15.62023 -14.87589 -14.62428 -14.54482 -14.43536 -14.31010 -14.28799 -14.13111 -14.06462 -13.95787 -13.87432 -13.74461 -13.38125 -13.37463 -13.24881 -13.16405 -12.79782 -12.64668 -12.54508 -12.35518 -12.17123 -12.14205 -12.05961 -11.91419 -11.60633 -11.07692 -10.92121 -10.74664 -10.55940 -10.38645 -10.13433 -10.04171 -9.76582 -9.47499 -0.47330 -0.25457 -0.05230 0.31438 0.96290 1.28421 1.35625 1.35717 1.49971 1.58301 1.69334 1.75793 2.00765 2.31881 2.32839 2.40819 2.50669 3.04574 3.07286 3.11911 3.41194 3.46421 3.57235 3.64533 3.77302 3.85300 3.91894 3.93687 4.05744 4.17042 4.28579 4.30392 4.46682 4.61527 4.61989 4.64362 4.64609 4.68649 4.68989 4.69352 4.69549 4.71159 4.82001 4.86548 4.88879 4.96096 5.10033 5.20835 5.28795 5.38252 5.41771 5.45296 5.47822 5.48448 5.57063 5.81573 6.38301 6.39205 6.69029 7.14262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.144 2.856 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.389 4.389 6 C -0.144 4.144 7 C 0.014 3.986 8 C -0.099 4.099 9 C -0.097 4.097 10 C -0.105 4.105 11 C 0.161 3.839 12 N -0.722 5.722 13 C 0.560 3.440 14 O -0.520 6.520 15 C -0.175 4.175 16 C -0.027 4.027 17 C -0.095 4.095 18 C -0.081 4.081 19 O -0.544 6.544 20 Si 0.941 3.059 21 H -0.244 1.244 22 H -0.253 1.253 23 H -0.247 1.247 24 C -0.067 4.067 25 C -0.155 4.155 26 C 0.167 3.833 27 F -0.111 7.111 28 C -0.097 4.097 29 C -0.098 4.098 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.402 0.598 44 H 0.140 0.860 45 H 0.082 0.918 46 H 0.384 0.616 47 H 0.136 0.864 48 H 0.150 0.850 49 H 0.131 0.869 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 -0.726 -5.323 7.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.330 2.670 3 C -0.561 4.561 4 C -0.560 4.560 5 C -0.423 4.423 6 C -0.144 4.144 7 C 0.013 3.987 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.105 4.105 11 C 0.039 3.961 12 N -0.375 5.375 13 C 0.347 3.653 14 O -0.396 6.396 15 C -0.179 4.179 16 C -0.045 4.045 17 C -0.096 4.096 18 C -0.191 4.191 19 O -0.351 6.351 20 Si 0.763 3.237 21 H -0.168 1.168 22 H -0.177 1.177 23 H -0.171 1.171 24 C -0.085 4.085 25 C -0.174 4.174 26 C 0.146 3.854 27 F -0.089 7.089 28 C -0.115 4.115 29 C -0.116 4.116 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.238 0.762 44 H 0.157 0.843 45 H 0.100 0.900 46 H 0.231 0.769 47 H 0.153 0.847 48 H 0.168 0.832 49 H 0.149 0.851 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.894 -1.123 -3.987 6.412 hybrid contribution -0.299 -0.004 -0.384 0.487 sum -5.193 -1.127 -4.371 6.881 Atomic orbital electron populations 1.26119 1.20005 1.04947 1.04951 0.76998 0.65985 0.64678 0.59370 1.26122 1.06726 1.18274 1.04948 1.26117 1.06714 1.08420 1.14792 1.36079 1.00271 1.01234 1.04719 1.20974 0.99632 0.98701 0.95096 1.16256 0.98213 0.94516 0.89672 1.21250 0.96985 0.94249 0.99191 1.21049 0.99317 0.99833 0.91386 1.19944 0.99802 0.96400 0.94379 1.20240 0.91417 0.90835 0.93617 1.45928 1.22495 1.39463 1.29597 1.17955 0.86213 0.80643 0.80510 1.90878 1.26293 1.67869 1.54541 1.20035 0.97447 1.01607 0.98771 1.20995 0.90256 0.95253 0.98038 1.19219 0.95454 0.98224 0.96658 1.24693 0.95230 0.95593 1.03627 1.86492 1.37606 1.31651 1.79307 0.85794 0.79304 0.77274 0.81287 1.16767 1.17650 1.17065 1.21057 0.96566 0.97838 0.93006 1.21110 0.93700 0.99955 1.02623 1.17713 0.82924 0.94905 0.89851 1.91627 1.45813 1.94259 1.77154 1.21060 0.96789 0.94738 0.98922 1.21256 0.99439 0.99950 0.90974 0.90906 0.90385 0.90919 0.90901 0.90380 0.90911 0.90919 0.90380 0.90901 0.85295 0.85112 0.89997 0.90000 0.76210 0.84276 0.90043 0.76852 0.84702 0.83215 0.85084 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.08 8.65 101.05 0.87 1.95 16 2 Si 1.14 -3.31 14.26 -169.99 -2.42 -5.74 16 3 C -0.45 1.00 8.65 101.05 0.87 1.88 16 4 C -0.45 1.06 8.65 101.05 0.87 1.94 16 5 C -0.39 -0.53 12.14 29.55 0.36 -0.17 16 6 C -0.14 -0.44 13.24 -38.83 -0.51 -0.96 16 7 C 0.01 0.03 5.72 -107.00 -0.61 -0.58 16 8 C -0.10 -0.10 9.75 -39.19 -0.38 -0.48 16 9 C -0.10 0.01 9.68 -39.64 -0.38 -0.37 16 10 C -0.10 0.01 5.25 -104.55 -0.55 -0.54 16 11 C 0.16 0.06 5.79 -5.19 -0.03 0.03 16 12 N -0.72 -0.37 5.50 -62.48 -0.34 -0.71 16 13 C 0.56 2.00 7.77 -12.40 -0.10 1.90 16 14 O -0.52 -3.90 15.34 5.31 0.08 -3.81 16 15 C -0.17 -0.39 5.88 -104.91 -0.62 -1.01 16 16 C -0.03 0.00 9.09 -39.19 -0.36 -0.35 16 17 C -0.10 0.04 5.42 -104.68 -0.57 -0.53 16 18 C -0.08 0.19 2.81 36.00 0.10 0.30 16 19 O -0.54 1.03 12.73 -35.23 -0.45 0.58 16 20 Si 0.94 -2.20 25.06 -169.99 -4.26 -6.46 16 21 H -0.24 0.22 7.11 56.52 0.40 0.62 16 22 H -0.25 0.50 7.11 56.52 0.40 0.90 16 23 H -0.25 0.47 7.11 56.52 0.40 0.87 16 24 C -0.07 0.03 8.66 -39.51 -0.34 -0.31 16 25 C -0.16 -0.06 10.01 -39.56 -0.40 -0.46 16 26 C 0.17 0.49 7.29 -38.96 -0.28 0.21 16 27 F -0.11 -0.60 15.55 2.25 0.04 -0.57 16 28 C -0.10 0.00 9.68 -39.64 -0.38 -0.39 16 29 C -0.10 -0.11 9.75 -39.19 -0.38 -0.49 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 37 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 39 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 40 H 0.13 -0.21 8.06 -52.49 -0.42 -0.64 16 41 H 0.08 0.06 8.08 -51.93 -0.42 -0.36 16 42 H 0.08 0.07 8.08 -51.93 -0.42 -0.35 16 43 H 0.40 -0.64 6.50 -40.82 -0.27 -0.91 16 44 H 0.14 -0.30 6.40 -52.49 -0.34 -0.64 16 45 H 0.08 -0.35 7.96 -51.93 -0.41 -0.77 16 46 H 0.38 -2.31 8.74 45.56 0.40 -1.91 16 47 H 0.14 -0.31 4.86 -52.49 -0.25 -0.57 16 48 H 0.15 -0.25 8.06 -52.49 -0.42 -0.68 16 49 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 50 H 0.13 0.00 8.06 -52.48 -0.42 -0.42 16 LS Contribution 436.25 15.07 6.57 6.57 Total: 0.00 -9.80 436.25 -9.94 -19.74 By element: Atomic # 1 Polarization: -4.83 SS G_CDS: -6.34 Total: -11.17 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.81 Total: 1.57 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -0.34 Total: -0.71 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -0.37 Total: -3.23 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.04 Total: -0.57 kcal Atomic # 14 Polarization: -5.51 SS G_CDS: -6.68 Total: -12.20 kcal Total LS contribution 6.57 Total: 6.57 kcal Total: -9.80 -9.94 -19.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13422146_12335834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.478 kcal (2) G-P(sol) polarization free energy of solvation -9.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds